SNP Profiles matching EET-272

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 Key

 1234567891011121314
_Input profile
AAACCCCCGGGGCTCCCCCCGGTTCCTT
1._GC-01-034-2-11
AAACCCCCGGGGCTCCCCCCGGTTCCTT
2._GC-01-034-2-11
AAACCCCCGGGGCTCCCCCCGGTTCCTT
3._GC-01-034-2-11
AAACCCCCGGGGCTCCCCCCGGTTCCTT
4._GC-01-034-2-11
AAACCCCCGGGGCTCCCCCCGGTTCCTT
5._GC-03-032-3-11
AAACCCCCGGGGCTCCCCCCGGTTCCTT
6._EET_272_[ECU]
AAACCCCC________CCCCGG__CC__
7._EET_272_[ECU]
AAACCCCC________CCCCGG__CC__
8._PA_150_[PER]
AAACCCCC________CCCCGG__CC__
9._PA_150_[PER]
AAACCCCC________CCCCGG__CC__
10._PA_150_[PER]
AAACCCCC________CCCCGG__CC__
11._PA_150_[PER]
AAACCCCC________CCCCGG__CC__
12._RUQ_1436
____CCCC____TT__CC____TTCC__
13._EQX_/O_[CHA]
AAACCCCC________CCCCGG__CC__
14._GC-07-077-4-21
AAACCCCCGGGGCTCCCCCCGGTTCCTT
15._RUQ_32
____CTCC____CT__CC____TTCC__
16._RUQ_1576
____CCCC____CT__CC____TTCC__
17._RUQ_1642
____CCCC____CT__CC____TTCC__
18._RUQ_1642
____CCCC____CT__CC____TTCC__
19._RUQ_1119
____CTCC____TT__CC____TTCC__
20._RUQ_1569
____CTCC____CT__CC____TTCC__
21._RUQ_1564
____CTCC____CT__CC____TTCC__
 1516171819202122232425262728
_Input profile
AACCAGCGCCCCTTAATTGGATAACCGG
1._GC-01-034-2-11
AACCAGCGCCCCTTAATTGGATAACCGG
2._GC-01-034-2-11
AACCAGCGCCCCTTAATTGGATAACCGG
3._GC-01-034-2-11
AACCAGCGCCCCTTAATTGGATAACCGG
4._GC-01-034-2-11
AACCAGCGCCCCTTAATTGGATAACCGG
5._GC-03-032-3-11
AACCAGCGCCCCTTAATTGGATAACCGG
6._EET_272_[ECU]
____AG____CC________ATAA__GG
7._EET_272_[ECU]
____AG____CC________ATAA__GG
8._PA_150_[PER]
____AG____CC________ATAA__GG
9._PA_150_[PER]
____AG____CC________ATAA__GG
10._PA_150_[PER]
____AG____CC________ATAA__GG
11._PA_150_[PER]
____AG____CC________ATAA__GG
12._RUQ_1436
________CC________GG__AACCGG
13._EQX_/O_[CHA]
____AG____CC________ATAA__GG
14._GC-07-077-4-21
AACCAGCCCCCCTTAATTGGATAACCGG
15._RUQ_32
________CC________GG__AACCGG
16._RUQ_1576
________CC________GG__AACCGG
17._RUQ_1642
________CC________GG__AACCGG
18._RUQ_1642
________CC________GG__AACCGG
19._RUQ_1119
________CC________GG__AACCGG
20._RUQ_1569
________CC________GG__AACCGG
21._RUQ_1564
________CC________GG__AACCGG
 2930313233343536373839404142
_Input profile
AATTGTGGCGCCAGGGGGTTGGCTAGCC
1._GC-01-034-2-11
AATTGTGGCGCCAGGGGGTTGGCTAGCC
2._GC-01-034-2-11
AATTGTGGCGCCAGGGGGTTGGCTAGCC
3._GC-01-034-2-11
AATTGTGGCGCCAGGGGGTTGGCTAGCC
4._GC-01-034-2-11
AATTGTGGCGCCAGGGGGTTGGCTAGCC
5._GC-03-032-3-11
AATTGTGGCGCCAGGGGGTTGGCTAGCC
6._EET_272_[ECU]
AA______CG__AGGG____GG______
7._EET_272_[ECU]
AA______CG__AGGG____GG______
8._PA_150_[PER]
AA______CG__AGGG____GG______
9._PA_150_[PER]
AA______CG__AGGG____GG______
10._PA_150_[PER]
AA______CG__AGGG____GG______
11._PA_150_[PER]
AA______CG__AGGG____GG______
12._RUQ_1436
______GGCGCCAGGG____GGCT____
13._EQX_/O_[CHA]
AA______CG____GG____GG______
14._GC-07-077-4-21
AATTGTGGCGCC__GGGGTTGGCCAGCC
15._RUQ_32
______GGCGCCAGGG____GGTT____
16._RUQ_1576
______GGCGCCAGGG____GGTT____
17._RUQ_1642
______GGCGCCAGGG____GGTT____
18._RUQ_1642
______GGCGCCAGGG____GGTT____
19._RUQ_1119
______GGGGCCAGGG____GGCT____
20._RUQ_1569
______GGCGCCAGGG____AGTT____
21._RUQ_1564
______GGCGCCAGGG____AGTT____
 4344454647484950515253545556
_Input profile
GGTTCTAAGGAACCCCGGAAGGTTCCCT
1._GC-01-034-2-11
GGTTCTAAGGAACCCCGGAAGGTTCCCT
2._GC-01-034-2-11
GGTTCTAAGGAACCCCGGAAGGTTCCCT
3._GC-01-034-2-11
GGTTCTAAGGAACCCCGGAAGGTTCCCT
4._GC-01-034-2-11
GGTTCTAAGGAACCCCGGAAGGTTCCCT
5._GC-03-032-3-11
GGTTCTAAGGAACC__GGAAGGTTCCCT
6._EET_272_[ECU]
____CT__________________CCCT
7._EET_272_[ECU]
____CT__________________CCCT
8._PA_150_[PER]
____CT__________________CCCT
9._PA_150_[PER]
____CT__________________CCCT
10._PA_150_[PER]
____CT__________________CCCT
11._PA_150_[PER]
____CT__________________CCCT
12._RUQ_1436
GGTT____GG____________TTCC__
13._EQX_/O_[CHA]
____CC__________________CCCC
14._GC-07-077-4-21
GGTTCCAAGGAACCCCGGAAGGTTCCCC
15._RUQ_32
GGTT____GG____________CTCC__
16._RUQ_1576
GGTT____GG____________TTCC__
17._RUQ_1642
GGTT____GG____________TTCC__
18._RUQ_1642
GGTT____GG____________TTCC__
19._RUQ_1119
GGTT____GG____________CTCT__
20._RUQ_1569
GGTT____GG____________CTCC__
21._RUQ_1564
GGTT____GG____________CTCC__
 5758596061626364656667686970
_Input profile
TTGGCCCCCCGGGGCCAGGTGGAGTTCC
1._GC-01-034-2-11
TTGGCCCCCCGGGGCCAGGTGGAGTTCC
2._GC-01-034-2-11
TTGGCCCCCCGGGGCCAGGTGGAGTTCC
3._GC-01-034-2-11
TTGGCCCCCCGGGGCCAGGTGGAGTTCC
4._GC-01-034-2-11
TTGGCCCCCCGGGGCCAGGTGGAGTTCC
5._GC-03-032-3-11
TTGGCCCCCCGGGGCCAGGTGGAGTTCC
6._EET_272_[ECU]
____CC__CCGG__CCAGGTGG______
7._EET_272_[ECU]
____CC__CCGG__CCAGGTGG______
8._PA_150_[PER]
____CC__CCGG__CCAGGTGG______
9._PA_150_[PER]
____CC__CCGG__CCAGGTGG______
10._PA_150_[PER]
____CC__CCGG__CCAGGTGG______
11._PA_150_[PER]
____CC__CCGG__CCAGGTGG______
12._RUQ_1436
TT__CCCCCC__GGCCAGGTGGAG____
13._EQX_/O_[CHA]
____CC__CCGG__CCAGGTGG______
14._GC-07-077-4-21
TTGGCCCCCCGGGGCCAGGTGGAGTTCC
15._RUQ_32
TT__CCCCCT__GGCCAGGTGGAG____
16._RUQ_1576
TTGGCCCCCC__GGACGGGGGGAG____
17._RUQ_1642
TT__CCCCCC__GGACGGGGGGAG____
18._RUQ_1642
TT__CCCCCC__GGACGGGGGGAG____
19._RUQ_1119
TT__CCCCCC__GGCCGGGTGGAG____
20._RUQ_1569
TT__CCCTCC__GGACAGGTGGGG____
21._RUQ_1564
TT__CCCTCC__GGACAGGTGGGG____
 7172737475767778798081828384
_Input profile
AGCTCCAGACCCAAACGGCCTTAATTCT
1._GC-01-034-2-11
AGCTCCAGACCCAAACGGCCTTAATTCT
2._GC-01-034-2-11
AGCTCCAGACCCAAACGGCCTTAATTCT
3._GC-01-034-2-11
AGCTCCAGACCCAAACGGCCTTAATTCT
4._GC-01-034-2-11
AGCTCCAGACCCAAACGGCCTTAATTCT
5._GC-03-032-3-11
AGCTCCAGACCCAAACGGCCTTAATTCT
6._EET_272_[ECU]
AGCT__________ACGG______TTCT
7._EET_272_[ECU]
AGCT__________ACGG______TTCT
8._PA_150_[PER]
AGCT__________ACGG______TTCT
9._PA_150_[PER]
AGCT__________ACGG______TTCT
10._PA_150_[PER]
AGCT__________ACGG______TTCT
11._PA_150_[PER]
AGCT__________ACGG______TTCT
12._RUQ_1436
______________ACGG____AATT__
13._EQX_/O_[CHA]
AGCT__________ACGG______TTCT
14._GC-07-077-4-21
AGCTCCAGAACCAAACGGCCTTAATTCT
15._RUQ_32
______________ACCG____AATT__
16._RUQ_1576
______________AACG____AATT__
17._RUQ_1642
______________AACG____AATT__
18._RUQ_1642
______________AACG____AATT__
19._RUQ_1119
______________ACGG____AATT__
20._RUQ_1569
______________ACCG____AATT__
21._RUQ_1564
______________ACCG____AATT__
 858687888990919293     
_Input profile
CCTTAACCCCTTTTAAGGX_XX_XX_XX_XX_X
1._GC-01-034-2-11
CCTTAACCCCTTTTAAGGX_XX_XX_XX_XX_X
2._GC-01-034-2-11
CCTTAACCCCTTTTAAGGX_XX_XX_XX_XX_X
3._GC-01-034-2-11
CCTTAACCCCTTTTAAGGX_XX_XX_XX_XX_X
4._GC-01-034-2-11
CCTTAACCCCTTTTAAGGX_XX_XX_XX_XX_X
5._GC-03-032-3-11
CCTTAACCCCTTTTAAGGX_XX_XX_XX_XX_X
6._EET_272_[ECU]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
7._EET_272_[ECU]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
8._PA_150_[PER]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
9._PA_150_[PER]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
10._PA_150_[PER]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
11._PA_150_[PER]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
12._RUQ_1436
____AACCCCTT______X_XX_XX_XX_XX_X
13._EQX_/O_[CHA]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
14._GC-07-077-4-21
CCTTAACCCCTTTTAAGGX_XX_XX_XX_XX_X
15._RUQ_32
____AACCCCTT______X_XX_XX_XX_XX_X
16._RUQ_1576
____AACCCCTT______X_XX_XX_XX_XX_X
17._RUQ_1642
____AACCCCTT______X_XX_XX_XX_XX_X
18._RUQ_1642
____AACCCCTT______X_XX_XX_XX_XX_X
19._RUQ_1119
____AGCCCCTT______X_XX_XX_XX_XX_X
20._RUQ_1569
____AACCCCTT______X_XX_XX_XX_XX_X
21._RUQ_1564
____AACCCCTT______X_XX_XX_XX_XX_X

Input profile: EET_272_[ECU] GC-03-032-3-11

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

1._PA_150_[PER] GC-01-034-2-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

2._PA_150_[PER] GC-01-034-2-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

3._PA_150_[PER] GC-01-034-2-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP4
 Mars, 2018

4._PA_150_[PER] GC-01-034-2-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

5._EET_272_[ECU] GC-03-032-3-11

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

6._EET_272_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 8
 Dapeng Zhang, 2016

7._EET_272_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 7
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

8._PA_150_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 7 > FP
 Dapeng Zhang, 2016

9._PA_150_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 10
 Dapeng Zhang, 2016

10._PA_150_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 3
 Dapeng Zhang, 2016

11._PA_150_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

12._MOQ_6_/95 RUQ_1436

98.8 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

13._EQX_/O_[CHA]

97.4 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7421 2
 Dapeng Zhang, 2016

14._EQX_/O_[CHA] GC-07-077-4-21

97.3 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

15._PA_56_[PER] RUQ_32

93.9 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

16._PA_124_[PER] RUQ_1576

92.9 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

17._PA_195_[PER] RUQ_1642

92.7 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

18._PA_195_[PER] RUQ_1642

92.7 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

19._PA_279_[PER] RUQ_1119

91.5 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

20._CRUZ_7_/14 RUQ_1569

90.2 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._PA_71_[PER] RUQ_1564

90.2 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240