SNP Profiles matching GU 221H

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
ATAACCCCAAAACTTTCCTTGGTTTTTT
1._GU_221_/H___
ATAACCCCAAAACTTTCCTTGGTTTTTT
2._U_54_[PER]___
ATAACCCCAAAACTTTCCTTGGTTTTTT
3._U_54_[PER]___
ATAACCCCAAAACTTTCCTTGGTTTTTT
4._U_54_[PER]___
ATAACCCCAAAACTTTCCTTGGTTTTTT
5._U_54_[PER]___
ATAACCCCAAAACTTTCCTTGGTTTTTT
6._U_54_[PER]___
ATAACCCCAAAACTTTCCTTGGTTTTTT
7._U_54_[PER]___
ATAACCCCAAAACTTTCCTTGGTTTTTT
8._U_54_[PER]___
ATAACCCCAAAACTTTCCTTGGTTTTTT
9._U_54_[PER]___
ATAACCCCAAAACTTTCCTTGGTTTTTT
10._U_54_[PER]___
ATAACCCCAAAACTTTCCTTGGTTTTTT
11._U_54_[PER]___
ATAACCCCAAAACTTTCCTTGGTTTTTT
12._U_54_[PER]___
ATAACCCCAAAACTTTCCTTGGTTTTTT
13._U_54_[PER]___
AT__CCCCAAAACTTTCCTTGGTTTTTT
14._U_54_[PER]___
ATAACCCCAAAACT__CCTTGGTTTTTT
15._GU_221_/H___
ATAACCCC________CCTTGG__TT__
16._U_45_[PER]___
____CCCC____TT__CC____TTTT__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAAAGGCCGGCGCCAACCGGAAGGCC
1._GU_221_/H___
AAAAAAGGCCGGCGCCAACCGGAAGGCC
2._U_54_[PER]___
AAAAAAGGCCGGCGCCAACCGGAAGGCC
3._U_54_[PER]___
AAAAAAGGCCGGCGCCAACCGGAAGGCC
4._U_54_[PER]___
AAAAAAGGCCGGCGCCAACCGGAAGGCC
5._U_54_[PER]___
AAAAAAGGCCGGCGCCAACCGGAAGGCC
6._U_54_[PER]___
AAAAAAGGCCGGCGCCAACCGGAAGGCC
7._U_54_[PER]___
AAAAAAGGCCGGCGCCAACCGGAAGGCC
8._U_54_[PER]___
AAAAAAGGCCGGCGCCAACCGGAAGGCC
9._U_54_[PER]___
AAAAAAGGCCGGCGCCAACCGGAAGGCC
10._U_54_[PER]___
AAAAAAGGCCGGCGCCAACCGGAAGGCC
11._U_54_[PER]___
AAAAAAGGCCGGCGCCAACCGGAAGGCC
12._U_54_[PER]___
AAAAAAGGCCGGCGCCAACCGGAAGGCC
13._U_54_[PER]___
AAAAAAGGCCGGCGCCAACCGGAAGGCC
14._U_54_[PER]___
AAAAAAGGCCGGCGCCAACCGGAAGGCC
15._GU_221_/H___
______GG____CG________AA__CC
16._U_45_[PER]___
__________GG________GG____CC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
TTTTTTAAGGCCAAGGTTTTAGCCGGCG
1._GU_221_/H___
TTTTTTAAGGCCAAGGTTTTAGCCGGCG
2._U_54_[PER]___
TTTTTTAAGGCCAAGGTTTTAGCCGGCG
3._U_54_[PER]___
TTTTTTAAGGCCAAGGTTTTAGCCGGCG
4._U_54_[PER]___
TTTTTTAAGGCCAAGGTTTTAGCCGGCG
5._U_54_[PER]___
TTTTTTAAGGCCAAGGTTTTAGCCGGCG
6._U_54_[PER]___
TTTTTTAAGGCCAAGGTTTTAGCCGGCG
7._U_54_[PER]___
TTTTTTAAGGCCAAGGTTTTAGCCGGCG
8._U_54_[PER]___
TTTTTTAAGGCCAAGGTTTTAGCCGGCG
9._U_54_[PER]___
TTTTTTAAGGCCAAGGTTTTAGCCGGCG
10._U_54_[PER]___
TTTTTTAAGGCCAAGGTTTTAGCCGGCG
11._U_54_[PER]___
TTTTTTAAGGCCAAGGTTTTAGCCGGCG
12._U_54_[PER]___
TTTTTTAAGGCCAAGGTTTTAGCCGGCG
13._U_54_[PER]___
TTTTTTAAGGCCAAGGTTTTAGCCGGCG
14._U_54_[PER]___
TTTTTTAAGGCCAAGGTTTTAGCCGGCG
15._GU_221_/H___
TT______GG__AAGG____AG______
16._U_45_[PER]___
______AAGGCCAAGG____AGCC____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGTTTTGGAAAACCACAGAATTTTTTCC
1._GU_221_/H___
GGTTTTGGAAAACCACAGAATTTTTTCC
2._U_54_[PER]___
GGTTTTGGAAAACCACAGAATTTTTTCC
3._U_54_[PER]___
GGTTTTGGAAAACCACAGAATTTTTTCC
4._U_54_[PER]___
GGTTTTGGAAAACCACAGAATTTTTTCC
5._U_54_[PER]___
GGTTTTGGAAAACCACAGAATTTTTTCC
6._U_54_[PER]___
GGTTTTGGAAAACCACAGAATTTTTTCC
7._U_54_[PER]___
GGTTTTGGAAAACCACAGAATTTTTTCC
8._U_54_[PER]___
GGTTTTGGAAAACCACAGAATTTTTTCC
9._U_54_[PER]___
GGTTTTGGAAAACCACAGAATTTTTTCC
10._U_54_[PER]___
GGTTTTGGAAAACCACAGAATTTTTTCC
11._U_54_[PER]___
GGTTTTGGAAAACCACAGAATTTTTTCC
12._U_54_[PER]___
GGTTTTGGAAAACCACAGAATTTTTTCC
13._U_54_[PER]___
GGTTTTGGAAAACCACAGAATTTTTTCC
14._U_54_[PER]___
GGTTTTGGAAAACCACAGAATTTTTTCC
15._GU_221_/H___
____TT__________________TTCC
16._U_45_[PER]___
GGTT____AG____________CCTT__
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
TTGGCGCCCCCCGGGGACGGGGGGAACT
1._GU_221_/H___
TTGGCGCCCCCCGGGGACGGGGGGAACT
2._U_54_[PER]___
TTGGCGCCCCCCGGGGACGGGGGGAACT
3._U_54_[PER]___
TTGGCGCCCCCCGGGGACGGGGGGAACT
4._U_54_[PER]___
TTGGCGCCCCCCGGGGACGGGGGGAACT
5._U_54_[PER]___
TTGGCGCCCCCCGGGGACGGGGGGAACT
6._U_54_[PER]___
TTGGCGCCCCCCGGGGACGGGGGGAACT
7._U_54_[PER]___
TTGGCGCCCCCCGGGGACGGGGGGAACT
8._U_54_[PER]___
TTGGCGCCCCCCGGGGACGGGGGGAACT
9._U_54_[PER]___
TTGGCGCCCCCCGGGGACGGGGGGAACT
10._U_54_[PER]___
TTGGCGCCCCCCGGGGACGGGGGGAACT
11._U_54_[PER]___
TTGGCGCCCCCCGGGGACGGGGGGAACT
12._U_54_[PER]___
TTGGCGCCCCCCGGGGACGGGGGGAACT
13._U_54_[PER]___
TTGGCGCCCCCCGGGGACGGGGGGAACT
14._U_54_[PER]___
TTGGCGCCCCCCGGGGACGGGGGGAACT
15._GU_221_/H___
____CG__CCCCGG__ACGGGGGG____
16._U_45_[PER]___
TT__CGCCCCCC__GGAAGGGGGGAA__
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CGAACTCCGGCCCCGGACCCCCAACCTT
1._GU_221_/H___
CGAACTCCGGCCCCGGACCCCCAACCTT
2._U_54_[PER]___
CGAACTCCGGCCCCGGACCCCCAACCTT
3._U_54_[PER]___
CGAACTCCGGCCCCGGACCCCCAACCTT
4._U_54_[PER]___
CGAACTCCGGCCCCGGACCCCCAACCTT
5._U_54_[PER]___
CGAACTCCGGCCCCGGACCCCCAACCTT
6._U_54_[PER]___
CGAACTCCGGCCCCGGACCCCCAACCTT
7._U_54_[PER]___
CGAACTCCGGCCCCGGACCCCCAACCTT
8._U_54_[PER]___
CGAACTCCGGCCCCGGACCCCCAACCTT
9._U_54_[PER]___
CGAACTCCGGCCCCGGACCCCCAACCTT
10._U_54_[PER]___
CGAACTCCGGCCCCGGACCCCCAACCTT
11._U_54_[PER]___
CGAACTCCGGCCCCGGACCCCCAACCTT
12._U_54_[PER]___
CGAACTCCGGCCCCGGACCCCCAACCTT
13._U_54_[PER]___
CGAACTCCGGCCCCGGACCCCCAACCTT
14._U_54_[PER]___
CGAACTCCGGCCCCGGACCCCCAACCTT
15._GU_221_/H___
__AACT__________ACCC______TT
16._U_45_[PER]___
________________AACC____ACTT
 85 86 87 88 89 90 91 92 93 94     
_Input profile
CCCCCCGGCCTTGTTTTTGGX_XX_XX_XX_X
1._GU_221_/H___
CCCCCCGGCCTTGTTTTTGGX_XX_XX_XX_X
2._U_54_[PER]___
CCCCCCGGCCTTGTTTTTGGX_XX_XX_XX_X
3._U_54_[PER]___
CCCCCCGGCCTTGTTTTTGGX_XX_XX_XX_X
4._U_54_[PER]___
CCCCCCGGCCTTGTTTTTGGX_XX_XX_XX_X
5._U_54_[PER]___
CCCCCCGGCCTTGTTTTTGGX_XX_XX_XX_X
6._U_54_[PER]___
CCCCCCGGCCTTGTTTTTGGX_XX_XX_XX_X
7._U_54_[PER]___
CCCCCCGGCCTTGTTTTTGGX_XX_XX_XX_X
8._U_54_[PER]___
CCCCCCGGCCTTGTTTTTGGX_XX_XX_XX_X
9._U_54_[PER]___
CCCCCCGGCCTTGTTTTTGGX_XX_XX_XX_X
10._U_54_[PER]___
CCCCCCGGCCTTGTTTTTGGX_XX_XX_XX_X
11._U_54_[PER]___
CCCCCCGGCCTTGTTTTTGGX_XX_XX_XX_X
12._U_54_[PER]___
CCCCCCGGCCTTGTTTTTGGX_XX_XX_XX_X
13._U_54_[PER]___
CCCCCCGGCCTTGTTTTTGGX_XX_XX_XX_X
14._U_54_[PER]___
CCCCCCGGCCTTGTTTTTGGX_XX_XX_XX_X
15._GU_221_/H___
CCCC__GG__TTGTTT____X_XX_XX_XX_X
16._U_45_[PER]___
______GGCCCTGT______X_XX_XX_XX_X

Input profile: U_54_[PER] GC-03-026-2-15

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

1._GU_221_/H GC-01-074-4-10

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

2._U_54_[PER] GC-03-026-2-15

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

3._U_54_[PER] GC-03-026-2-15

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

4._U_54_[PER] GC-03-026-2-15

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

5._U_54_[PER] GC-03-026-2-15

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

6._U_54_[PER] GC-03-026-2-15

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

7._U_54_[PER] GC-03-026-2-15

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

8._U_54_[PER] GC-03-026-2-15

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP3
 Mars, 2018

9._U_54_[PER] GC-03-026-2-15

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

10._U_54_[PER] GC-03-026-2-15

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

11._U_54_[PER] GC-03-026-2-15

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

12._U_54_[PER] GC-03-026-2-15

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

13._U_54_[PER] GC-03-026-2-15

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

14._U_54_[PER] GC-03-026-2-15

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

15._GU_221_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7410 ( >> 1410) 4 > FP
 Dapeng Zhang, 2016

16._U_45_[PER] RUQ_1495

90 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240