SNP Profiles matching AMAZ 3 /2

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAAACCAAGGGGTTCCCCCTGGTTCCTT
1._AMAZ_3_/2___
AAAACCAAGGGGTTCCCCCTGGTTCCTT
2._AMAZ_3_/2___
AAAACCAAGGGGTTCCCCCTGGTTCCTT
3._AMAZ_3_/2___
AAAACCAAGGGGTTCCCCCTGGTTCCTT
4._AMAZ_3_/2___
AAAACCAAGGGGTTCCCCCTGGTTCCTT
5._AMAZ_3_/2___
AAAACCAAGGGGTTCCCCCTGGTTCCTT
6._AMAZ_3_/2___
AAAACCAAGGGGTTCCCCCTGGTTCCTT
7._AMAZ_3_/2___
AAAACCAAGGGGTTCCCCCTGGTTCCTT
8._AMAZ_3_/2___
AA__CCAAGGGGTTCCCCCTGGTTCCTT
9._AMAZ_3_/2___
AAAACCAAGGGGTTCCCCCTGGTTCCTT
10._AMAZ_3_/2___
AAAACCAA________CCCTGG__CC__
11._AMAZ_3_/2___
AAAACCAA________CCCTGG__CC__
12._AMAZ_3_/2___
AAAACCAA________CCCTGG__CC__
13._AMAZ_3_/2___
AAAACCAA________CCCTGG__CC__
14._AMAZ_3_/2___
AAAACCAA________CCCTGG__CC__
15._AMAZ_3_/2___
AAAACCAA________CCCTGG__CC__
16._AMAZ_3_/2___
AAAACCAA________CCCTGG__CC__
17._AMAZ_3_/2___
AAAACCAA________CCCTGG__CC__
18._AMAZ_3_/2___
AA__CCAA________CCCTGG__CC__
19._AMAZ_3_/2___
AAAACCAA________CCCTGG__CC__
20._AMAZ_3_/2___
AAAACCAA________CCCTGG__CC__
21._AMAZ_3_/2___
AAAACCAA________CTCTGG__CC__
22._AMAZ_3_/2___
____CCAA____TT__CC____TTCC__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
ATCCAAGGCGCGGGCCAATTGGATATCC
1._AMAZ_3_/2___
ATCCAAGGCGCGGGCCAATTGGATATCC
2._AMAZ_3_/2___
ATCCAAGGCGCGGGCCAATTGGATATCC
3._AMAZ_3_/2___
ATCCAAGGCGCGGGCCAATTGGATATCC
4._AMAZ_3_/2___
ATCCAAGGCGCGGGCCAATTGGATATCC
5._AMAZ_3_/2___
ATCCAAGGCGCGGGCCAATTGGATATCC
6._AMAZ_3_/2___
ATCCAAGGCGCGGGCCAATTGGATATCC
7._AMAZ_3_/2___
ATCCAAGGCGCGGGCCAATTGGATATCC
8._AMAZ_3_/2___
ATCCAAGGCGCGGGCCAATTGGATATCC
9._AMAZ_3_/2___
ATCCAAGGCGCGGGCCAATTGGATATCC
10._AMAZ_3_/2___
______GG____GG________ATAT__
11._AMAZ_3_/2___
______GG____GG________ATAT__
12._AMAZ_3_/2___
______GG____GG________ATAT__
13._AMAZ_3_/2___
______GG____GG________ATAT__
14._AMAZ_3_/2___
______GG____GG________ATAT__
15._AMAZ_3_/2___
______GG____GG________ATAT__
16._AMAZ_3_/2___
______GG____GG________ATAT__
17._AMAZ_3_/2___
______GG____GG________ATAT__
18._AMAZ_3_/2___
______GG____GG________ATAT__
19._AMAZ_3_/2___
______GG____GG________ATAT__
20._AMAZ_3_/2___
______GG____GG________ATAT__
21._AMAZ_3_/2___
______GG____GG________ATAT__
22._AMAZ_3_/2___
__________CG________GG__AT__
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CGATTTGTGGCCAAGTGGTTTTAGCCGG
1._AMAZ_3_/2___
CGATTTGTGGCCAAGTGGTTTTAGCCGG
2._AMAZ_3_/2___
CGATTTGTGGCCAAGTGGTTTTAGCCGG
3._AMAZ_3_/2___
CGATTTGTGGCCAAGTGGTTTTAGCCGG
4._AMAZ_3_/2___
CGATTTGTGGCCAAGTGGTTTTAGCCGG
5._AMAZ_3_/2___
CGATTTGTGGCCAAGTGGTTTTAGCCGG
6._AMAZ_3_/2___
CGATTTGTGGCCAAGTGGTTTTAGCCGG
7._AMAZ_3_/2___
CGATTTGTGGCCAAGTGGTTTTAGCCGG
8._AMAZ_3_/2___
CGATTTGTGGCCAAGTGGTTTTAGCCGG
9._AMAZ_3_/2___
CGATTTGTGGCCAAGTGGTTTTAGCCGG
10._AMAZ_3_/2___
CGAT________AAGT____________
11._AMAZ_3_/2___
CGAT________AAGT____________
12._AMAZ_3_/2___
CGAT________AAGT____________
13._AMAZ_3_/2___
CGAT________AAGT____________
14._AMAZ_3_/2___
CGAT________AAGT____________
15._AMAZ_3_/2___
CGAT________AAGT____________
16._AMAZ_3_/2___
CGAT________AAGT____________
17._AMAZ_3_/2___
CGAT________AAGT____________
18._AMAZ_3_/2___
CGAT________AAGT____________
19._AMAZ_3_/2___
CGAT________AAGT____________
20._AMAZ_3_/2___
CGAT________AAGT____________
21._AMAZ_3_/2___
CGAT________AAGT____________
22._AMAZ_3_/2___
________AACCAAGT____TT____GG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
TTTTAAGGAACCACGGAATTTTCCCCTT
1._AMAZ_3_/2___
TTTTAAGGAACCACGGAATTTTCCCCTT
2._AMAZ_3_/2___
TTTTAAGGAACCACGGAATTTTCCCCTT
3._AMAZ_3_/2___
TTTTAAGGAACCACGGAATTTTCCCCTT
4._AMAZ_3_/2___
TTTTAAGGAACCACGGAATTTTCCCCTT
5._AMAZ_3_/2___
TTTTAAGGAACCACGGAATTTTCCCCTT
6._AMAZ_3_/2___
TTTTAAGGAACCACGGAATTTTCCCCTT
7._AMAZ_3_/2___
TTTTAAGGAACCACGGAATTTT__CCTT
8._AMAZ_3_/2___
TTTTAAGGAACCACGGAATTTTCCCCTT
9._AMAZ_3_/2___
TTTTAAGGAACCACGGAATTTTCCCCTT
10._AMAZ_3_/2___
__TT__________________CCCC__
11._AMAZ_3_/2___
__TT__________________CCCC__
12._AMAZ_3_/2___
__TT__________________CCCC__
13._AMAZ_3_/2___
__TT__________________CCCC__
14._AMAZ_3_/2___
__TT__________________CCCC__
15._AMAZ_3_/2___
__TT__________________CCCC__
16._AMAZ_3_/2___
__TT__________________CCCC__
17._AMAZ_3_/2___
__TT__________________CCCC__
18._AMAZ_3_/2___
__TT__________________CCCC__
19._AMAZ_3_/2___
__TT____________________CC__
20._AMAZ_3_/2___
__TT__________________CCCC__
21._AMAZ_3_/2___
__TT__________________CCCC__
22._AMAZ_3_/2___
TT____GG____________TTCC__TT
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GGGGCCTTAAGGGGAAAAGGGTAATTCG
1._AMAZ_3_/2___
GGGGCCTTAAGGGGAAAAGGGTAATTCG
2._AMAZ_3_/2___
GGGGCCTTAAGGGGAAAAGGGTAATTCG
3._AMAZ_3_/2___
GGGGCCTTAAGGGGAAAAGGGTAATTCG
4._AMAZ_3_/2___
GGGGCCTTAAGGGGAAAAGGGTAATTCG
5._AMAZ_3_/2___
GGGGCCTTAAGGGGAAAAGGGTAATTCG
6._AMAZ_3_/2___
GGGGCCTTAAGGGGAAAAGGGTAATTCG
7._AMAZ_3_/2___
GGGGCCTTAAGGGGAAAAGGGTAATTCG
8._AMAZ_3_/2___
GGGGCCTTAAGGGGAAAAGGGTAATTCG
9._AMAZ_3_/2___
GGGGCCTTAAGGGGAAAAGGGTAATTCG
10._AMAZ_3_/2___
__GG__TTAAGG__AAAAGGGT______
11._AMAZ_3_/2___
__GG__TTAAGG__AAAAGGGT______
12._AMAZ_3_/2___
__GG__TTAAGG__AAAAGGGT______
13._AMAZ_3_/2___
__GG__TTAAGG__AAAAGGGT______
14._AMAZ_3_/2___
__GG__TTAAGG__AAAAGGGT______
15._AMAZ_3_/2___
__GG__TTAAGG__AAAAGGGT______
16._AMAZ_3_/2___
__GG__TTAAGG__AAAAGGGT______
17._AMAZ_3_/2___
__GG__TTAAGG__AAAAGGGT______
18._AMAZ_3_/2___
__GG__TTAAGG__AAAAGGGT______
19._AMAZ_3_/2___
__GG__TTAAGG__AAAAGGGT______
20._AMAZ_3_/2___
__GG__TTAAGG__AAAAGGGT______
21._AMAZ_3_/2___
__GG__TTAAGG__AAAAGGGT______
22._AMAZ_3_/2___
__GG____AA__GGAAAA__GT______
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
AACTACAACCCCAACCCCCCAAAACCCT
1._AMAZ_3_/2___
AACTACAACCCCAACCCCCCAAAACCCT
2._AMAZ_3_/2___
AACTACAACCCCAACCCCCCAAAACCCT
3._AMAZ_3_/2___
AACTACAACCCCAACCCCCCAAAACCCT
4._AMAZ_3_/2___
AACTACAACCCCAACCCCCCAAAACCCT
5._AMAZ_3_/2___
AACTACAACCCCAACCCCCCAAAACCCT
6._AMAZ_3_/2___
AACTACAACCCCAACCCCCCAAAACCCT
7._AMAZ_3_/2___
AACTACAACCCCAACCCCCCAAAACCCT
8._AMAZ_3_/2___
AACTACAACCCCAACCCCCCAAAACCCT
9._AMAZ_3_/2___
AACTACAACCCCAACCCCCCAAAACCCT
10._AMAZ_3_/2___
AACT__________CCCC______CCCT
11._AMAZ_3_/2___
AACT__________CCCC______CCCT
12._AMAZ_3_/2___
AACT__________CCCC______CCCT
13._AMAZ_3_/2___
AACT__________CCCC______CCCT
14._AMAZ_3_/2___
AACT__________CCCC______CCCT
15._AMAZ_3_/2___
AACT__________CCCC______CCCT
16._AMAZ_3_/2___
AACT__________CCCC______CCCT
17._AMAZ_3_/2___
AACT__________CCCC______CCCT
18._AMAZ_3_/2___
AACT__________CCCC______CCCT
19._AMAZ_3_/2___
AACT__________CCCC______CCCT
20._AMAZ_3_/2___
AACT__________CCCC______CCCT
21._AMAZ_3_/2___
AACT__________CCCC______CCCT
22._AMAZ_3_/2___
______________CCCC______CC__
 85 86 87 88 89 90 91 92 93      
_Input profile
CCCTAACCTTTTTTATGGX_XX_XX_XX_XX_X
1._AMAZ_3_/2___
CCCTAACCTTTTTTATGGX_XX_XX_XX_XX_X
2._AMAZ_3_/2___
CCCTAACCTTTTTTATGGX_XX_XX_XX_XX_X
3._AMAZ_3_/2___
CCCTAACCTTTTTTATGGX_XX_XX_XX_XX_X
4._AMAZ_3_/2___
CCCTAACCTTTTTTATGGX_XX_XX_XX_XX_X
5._AMAZ_3_/2___
CCCTAACCTTTTTTATGGX_XX_XX_XX_XX_X
6._AMAZ_3_/2___
CCCTAACCTTTTTTATGGX_XX_XX_XX_XX_X
7._AMAZ_3_/2___
CCCTAACCTTTTTTATGGX_XX_XX_XX_XX_X
8._AMAZ_3_/2___
CCCTAACCTTTTTTATGGX_XX_XX_XX_XX_X
9._AMAZ_3_/2___
CCCTAACCTTTT__ATGGX_XX_XX_XX_XX_X
10._AMAZ_3_/2___
CC__AA__TTTTTT____X_XX_XX_XX_XX_X
11._AMAZ_3_/2___
CC__AA__TTTTTT____X_XX_XX_XX_XX_X
12._AMAZ_3_/2___
CC__AA__TTTTTT____X_XX_XX_XX_XX_X
13._AMAZ_3_/2___
CC__AA__TTTTTT____X_XX_XX_XX_XX_X
14._AMAZ_3_/2___
CC__AA__TTTTTT____X_XX_XX_XX_XX_X
15._AMAZ_3_/2___
CC__AA__TTTTTT____X_XX_XX_XX_XX_X
16._AMAZ_3_/2___
CC__AA__TTTTTT____X_XX_XX_XX_XX_X
17._AMAZ_3_/2___
CC__AA__TTTTTT____X_XX_XX_XX_XX_X
18._AMAZ_3_/2___
CC__AA__TTTTTT____X_XX_XX_XX_XX_X
19._AMAZ_3_/2___
CC__AA__TTTTTT____X_XX_XX_XX_XX_X
20._AMAZ_3_/2___
CC__AA__TTTT______X_XX_XX_XX_XX_X
21._AMAZ_3_/2___
CC__AA__TTTTTT____X_XX_XX_XX_XX_X
22._AMAZ_3_/2___
__________TT______X_XX_XX_XX_XX_X

Input profile: AMAZ_3_/2 GC-03-022-2-11

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

1._AMAZ_3_/2 GC-03-022-2-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP4
 Mars, 2018

2._AMAZ_3_/2 GC-03-022-2-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

3._AMAZ_3_/2 GC-03-022-2-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

4._AMAZ_3_/2 GC-03-022-2-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

5._AMAZ_3_/2 GC-03-022-2-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP2
 Mars, 2018

6._AMAZ_3_/2 GC-03-022-2-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

7._AMAZ_3_/2 GC-03-022-2-11

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

8._AMAZ_3_/2 GC-03-022-2-11

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

9._AMAZ_3_/2 GC-03-022-2-11

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

10._AMAZ_3_/2

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 5 > FP
 Dapeng Zhang, 2016

11._AMAZ_3_/2

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 14 > F
 Dapeng Zhang, 2016

12._AMAZ_3_/2

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 1 > FP
 Dapeng Zhang, 2016

13._AMAZ_3_/2

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 16
 Dapeng Zhang, 2016

14._AMAZ_3_/2

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 15
 Dapeng Zhang, 2016

15._AMAZ_3_/2

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 13
 Dapeng Zhang, 2016

16._AMAZ_3_/2

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 12
 Dapeng Zhang, 2016

17._AMAZ_3_/2

identical
38 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P97 225
 Dapeng Zhang, 2016

18._AMAZ_3_/2

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 8
 Dapeng Zhang, 2016

19._AMAZ_3_/2

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 7
 Dapeng Zhang, 2016

20._AMAZ_3_/2

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 9
 Dapeng Zhang, 2016

21._AMAZ_3_/2 RUQ_91

98.7 %
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

22._AMAZ_3_/2 RUQ_91

96.7 %
30 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240