SNP Profiles matching AMAZ 3 /2

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAAACCAAGGGGTTCCCCCTGGTTCCTT
1._AMAZ_3_/2___
AAAACCAAGGGGTTCCCCCTGGTTCCTT
2._AMAZ_3_/2___
AAAACCAAGGGGTTCCCCCTGGTTCCTT
3._AMAZ_3_/2___
AAAACCAAGGGGTTCCCCCTGGTTCCTT
4._AMAZ_3_/2___
AAAACCAAGGGGTTCCCCCTGGTTCCTT
5._AMAZ_3_/2___
AAAACCAAGGGGTTCCCCCTGGTTCCTT
6._AMAZ_3_/2___
AAAACCAAGGGGTTCCCCCTGGTTCCTT
7._AMAZ_3_/2___
AAAACCAAGGGGTTCCCCCTGGTTCCTT
8._AMAZ_3_/2___
AA__CCAAGGGGTTCCCCCTGGTTCCTT
9._AMAZ_3_/2___
AAAACCAAGGGGTTCCCCCTGGTTCCTT
10._AMAZ_3_/2___
AAAACCAA________CCCTGG__CC__
11._AMAZ_3_/2___
AAAACCAA________CCCTGG__CC__
12._AMAZ_3_/2___
AAAACCAA________CCCTGG__CC__
13._AMAZ_3_/2___
AAAACCAA________CCCTGG__CC__
14._AMAZ_3_/2___
AAAACCAA________CCCTGG__CC__
15._AMAZ_3_/2___
AAAACCAA________CCCTGG__CC__
16._AMAZ_3_/2___
AAAACCAA________CCCTGG__CC__
17._AMAZ_3_/2___
AAAACCAA________CCCTGG__CC__
18._AMAZ_3_/2___
AA__CCAA________CCCTGG__CC__
19._AMAZ_3_/2___
AAAACCAA________CCCTGG__CC__
20._AMAZ_3_/2___
AAAACCAA________CCCTGG__CC__
21._AMAZ_3_/2___
AAAACCAA________CTCTGG__CC__
22._AMAZ_3_/2___
____CCAA____TT__CC____TTCC__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
ATCCAAGGCGCGGGCCAATTGGATATCC
1._AMAZ_3_/2___
ATCCAAGGCGCGGGCCAATTGGATATCC
2._AMAZ_3_/2___
ATCCAAGGCGCGGGCCAATTGGATATCC
3._AMAZ_3_/2___
ATCCAAGGCGCGGGCCAATTGGATATCC
4._AMAZ_3_/2___
ATCCAAGGCGCGGGCCAATTGGATATCC
5._AMAZ_3_/2___
ATCCAAGGCGCGGGCCAATTGGATATCC
6._AMAZ_3_/2___
ATCCAAGGCGCGGGCCAATTGGATATCC
7._AMAZ_3_/2___
ATCCAAGGCGCGGGCCAATTGGATATCC
8._AMAZ_3_/2___
ATCCAAGGCGCGGGCCAATTGGATATCC
9._AMAZ_3_/2___
ATCCAAGGCGCGGGCCAATTGGATATCC
10._AMAZ_3_/2___
______GG____GG________ATAT__
11._AMAZ_3_/2___
______GG____GG________ATAT__
12._AMAZ_3_/2___
______GG____GG________ATAT__
13._AMAZ_3_/2___
______GG____GG________ATAT__
14._AMAZ_3_/2___
______GG____GG________ATAT__
15._AMAZ_3_/2___
______GG____GG________ATAT__
16._AMAZ_3_/2___
______GG____GG________ATAT__
17._AMAZ_3_/2___
______GG____GG________ATAT__
18._AMAZ_3_/2___
______GG____GG________ATAT__
19._AMAZ_3_/2___
______GG____GG________ATAT__
20._AMAZ_3_/2___
______GG____GG________ATAT__
21._AMAZ_3_/2___
______GG____GG________ATAT__
22._AMAZ_3_/2___
__________CG________GG__AT__
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CGATTTGTGGCCAAGTGGTTAATTAGCC
1._AMAZ_3_/2___
CGATTTGTGGCCAAGTGGTTAATTAGCC
2._AMAZ_3_/2___
CGATTTGTGGCCAAGTGGTTAATTAGCC
3._AMAZ_3_/2___
CGATTTGTGGCCAAGTGGTTAATTAGCC
4._AMAZ_3_/2___
CGATTTGTGGCCAAGTGGTTAATTAGCC
5._AMAZ_3_/2___
CGATTTGTGGCCAAGTGGTTAATTAGCC
6._AMAZ_3_/2___
CGATTTGTGGCCAAGTGGTTAATTAGCC
7._AMAZ_3_/2___
CGATTTGTGGCCAAGTGGTTAATTAGCC
8._AMAZ_3_/2___
CGATTTGTGGCCAAGTGGTTAATTAGCC
9._AMAZ_3_/2___
CGATTTGTGGCCAAGTGGTT__TTAGCC
10._AMAZ_3_/2___
CGAT________AAGT____AA______
11._AMAZ_3_/2___
CGAT________AAGT____AA______
12._AMAZ_3_/2___
CGAT________AAGT____AA______
13._AMAZ_3_/2___
CGAT________AAGT____AA______
14._AMAZ_3_/2___
CGAT________AAGT____AA______
15._AMAZ_3_/2___
CGAT________AAGT____AA______
16._AMAZ_3_/2___
CGAT________AAGT____AA______
17._AMAZ_3_/2___
CGAT________AAGT____AA______
18._AMAZ_3_/2___
CGAT________AAGT____AA______
19._AMAZ_3_/2___
CGAT________AAGT____AA______
20._AMAZ_3_/2___
CGAT________AAGT____________
21._AMAZ_3_/2___
CGAT________AAGT____AG______
22._AMAZ_3_/2___
________AACCAAGT____AATT____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGTTTTAAGGAACCACGGAATTTTCCCC
1._AMAZ_3_/2___
GGTTTTAAGGAACCACGGAATTTTCCCC
2._AMAZ_3_/2___
GGTTTTAAGGAACCACGGAATTTTCCCC
3._AMAZ_3_/2___
GGTTTTAAGGAACCACGGAATTTTCCCC
4._AMAZ_3_/2___
GGTTTTAAGGAACCACGGAATTTTCCCC
5._AMAZ_3_/2___
GGTTTTAAGGAACCACGGAATTTTCCCC
6._AMAZ_3_/2___
GGTTTTAAGGAACCACGGAATTTTCCCC
7._AMAZ_3_/2___
GGTTTTAAGGAACCACGGAATTTT__CC
8._AMAZ_3_/2___
GGTTTTAAGGAACCACGGAATTTTCCCC
9._AMAZ_3_/2___
GGTTTTAAGGAACCACGGAATTTTCCCC
10._AMAZ_3_/2___
____TT__________________CCCC
11._AMAZ_3_/2___
____TT__________________CCCC
12._AMAZ_3_/2___
____TT__________________CCCC
13._AMAZ_3_/2___
____TT__________________CCCC
14._AMAZ_3_/2___
____TT__________________CCCC
15._AMAZ_3_/2___
____TT__________________CCCC
16._AMAZ_3_/2___
____TT__________________CCCC
17._AMAZ_3_/2___
____TT__________________CCCC
18._AMAZ_3_/2___
____TT__________________CCCC
19._AMAZ_3_/2___
____TT____________________CC
20._AMAZ_3_/2___
____TT__________________CCCC
21._AMAZ_3_/2___
____TT__________________CCCC
22._AMAZ_3_/2___
GGTT____GG____________TTCC__
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
TTGGGGCCTTAAGGGGAAAAGGGTAATT
1._AMAZ_3_/2___
TTGGGGCCTTAAGGGGAAAAGGGTAATT
2._AMAZ_3_/2___
TTGGGGCCTTAAGGGGAAAAGGGTAATT
3._AMAZ_3_/2___
TTGGGGCCTTAAGGGGAAAAGGGTAATT
4._AMAZ_3_/2___
TTGGGGCCTTAAGGGGAAAAGGGTAATT
5._AMAZ_3_/2___
TTGGGGCCTTAAGGGGAAAAGGGTAATT
6._AMAZ_3_/2___
TTGGGGCCTTAAGGGGAAAAGGGTAATT
7._AMAZ_3_/2___
TTGGGGCCTTAAGGGGAAAAGGGTAATT
8._AMAZ_3_/2___
TTGGGGCCTTAAGGGGAAAAGGGTAATT
9._AMAZ_3_/2___
TTGGGGCCTTAAGGGGAAAAGGGTAATT
10._AMAZ_3_/2___
____GG__TTAAGG__AAAAGGGT____
11._AMAZ_3_/2___
____GG__TTAAGG__AAAAGGGT____
12._AMAZ_3_/2___
____GG__TTAAGG__AAAAGGGT____
13._AMAZ_3_/2___
____GG__TTAAGG__AAAAGGGT____
14._AMAZ_3_/2___
____GG__TTAAGG__AAAAGGGT____
15._AMAZ_3_/2___
____GG__TTAAGG__AAAAGGGT____
16._AMAZ_3_/2___
____GG__TTAAGG__AAAAGGGT____
17._AMAZ_3_/2___
____GG__TTAAGG__AAAAGGGT____
18._AMAZ_3_/2___
____GG__TTAAGG__AAAAGGGT____
19._AMAZ_3_/2___
____GG__TTAAGG__AAAAGGGT____
20._AMAZ_3_/2___
____GG__TTAAGG__AAAAGGGT____
21._AMAZ_3_/2___
____GG__TTAAGG__AAAAGGGT____
22._AMAZ_3_/2___
TT__GG____AA__GGAAAA__GT____
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CGAACTACAACCCCAACCCCCCAAAACC
1._AMAZ_3_/2___
CGAACTACAACCCCAACCCCCCAAAACC
2._AMAZ_3_/2___
CGAACTACAACCCCAACCCCCCAAAACC
3._AMAZ_3_/2___
CGAACTACAACCCCAACCCCCCAAAACC
4._AMAZ_3_/2___
CGAACTACAACCCCAACCCCCCAAAACC
5._AMAZ_3_/2___
CGAACTACAACCCCAACCCCCCAAAACC
6._AMAZ_3_/2___
CGAACTACAACCCCAACCCCCCAAAACC
7._AMAZ_3_/2___
CGAACTACAACCCCAACCCCCCAAAACC
8._AMAZ_3_/2___
CGAACTACAACCCCAACCCCCCAAAACC
9._AMAZ_3_/2___
CGAACTACAACCCCAACCCCCCAAAACC
10._AMAZ_3_/2___
__AACT__________CCCC______CC
11._AMAZ_3_/2___
__AACT__________CCCC______CC
12._AMAZ_3_/2___
__AACT__________CCCC______CC
13._AMAZ_3_/2___
__AACT__________CCCC______CC
14._AMAZ_3_/2___
__AACT__________CCCC______CC
15._AMAZ_3_/2___
__AACT__________CCCC______CC
16._AMAZ_3_/2___
__AACT__________CCCC______CC
17._AMAZ_3_/2___
__AACT__________CCCC______CC
18._AMAZ_3_/2___
__AACT__________CCCC______CC
19._AMAZ_3_/2___
__AACT__________CCCC______CC
20._AMAZ_3_/2___
__AACT__________CCCC______CC
21._AMAZ_3_/2___
__AACT__________CCCC______CC
22._AMAZ_3_/2___
________________CCCC______CC
 85 86 87 88 89 90 91 92 93      
_Input profile
CTCCCTAACCTTTTATGGX_XX_XX_XX_XX_X
1._AMAZ_3_/2___
CTCCCTAACCTTTTATGGX_XX_XX_XX_XX_X
2._AMAZ_3_/2___
CTCCCTAACCTTTTATGGX_XX_XX_XX_XX_X
3._AMAZ_3_/2___
CTCCCTAACCTTTTATGGX_XX_XX_XX_XX_X
4._AMAZ_3_/2___
CTCCCTAACCTTTTATGGX_XX_XX_XX_XX_X
5._AMAZ_3_/2___
CTCCCTAACCTTTTATGGX_XX_XX_XX_XX_X
6._AMAZ_3_/2___
CTCCCTAACCTTTTATGGX_XX_XX_XX_XX_X
7._AMAZ_3_/2___
CTCCCTAACCTTTTATGGX_XX_XX_XX_XX_X
8._AMAZ_3_/2___
CTCCCTAACCTTTTATGGX_XX_XX_XX_XX_X
9._AMAZ_3_/2___
CTCCCTAACCTTTTATGGX_XX_XX_XX_XX_X
10._AMAZ_3_/2___
CTCC__AA__TTTT____X_XX_XX_XX_XX_X
11._AMAZ_3_/2___
CTCC__AA__TTTT____X_XX_XX_XX_XX_X
12._AMAZ_3_/2___
CTCC__AA__TTTT____X_XX_XX_XX_XX_X
13._AMAZ_3_/2___
CTCC__AA__TTTT____X_XX_XX_XX_XX_X
14._AMAZ_3_/2___
CTCC__AA__TTTT____X_XX_XX_XX_XX_X
15._AMAZ_3_/2___
CTCC__AA__TTTT____X_XX_XX_XX_XX_X
16._AMAZ_3_/2___
CTCC__AA__TTTT____X_XX_XX_XX_XX_X
17._AMAZ_3_/2___
CTCC__AA__TTTT____X_XX_XX_XX_XX_X
18._AMAZ_3_/2___
CTCC__AA__TTTT____X_XX_XX_XX_XX_X
19._AMAZ_3_/2___
CTCC__AA__TTTT____X_XX_XX_XX_XX_X
20._AMAZ_3_/2___
CTCC__AA__TTTT____X_XX_XX_XX_XX_X
21._AMAZ_3_/2___
CTCC__AA__TTTT____X_XX_XX_XX_XX_X
22._AMAZ_3_/2___
____________TT____X_XX_XX_XX_XX_X

Input profile: AMAZ_3_/2 GC-03-022-2-11

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

1._AMAZ_3_/2 GC-03-022-2-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP4
 Mars, 2018

2._AMAZ_3_/2 GC-03-022-2-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

3._AMAZ_3_/2 GC-03-022-2-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

4._AMAZ_3_/2 GC-03-022-2-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

5._AMAZ_3_/2 GC-03-022-2-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP2
 Mars, 2018

6._AMAZ_3_/2 GC-03-022-2-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

7._AMAZ_3_/2 GC-03-022-2-11

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

8._AMAZ_3_/2 GC-03-022-2-11

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

9._AMAZ_3_/2 GC-03-022-2-11

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

10._AMAZ_3_/2

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 5 > FP
 Dapeng Zhang, 2016

11._AMAZ_3_/2

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 14 > F
 Dapeng Zhang, 2016

12._AMAZ_3_/2

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 1 > FP
 Dapeng Zhang, 2016

13._AMAZ_3_/2

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 15
 Dapeng Zhang, 2016

14._AMAZ_3_/2

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 13
 Dapeng Zhang, 2016

15._AMAZ_3_/2

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 12
 Dapeng Zhang, 2016

16._AMAZ_3_/2

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 9
 Dapeng Zhang, 2016

17._AMAZ_3_/2

identical
38 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P97 225
 Dapeng Zhang, 2016

18._AMAZ_3_/2

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 8
 Dapeng Zhang, 2016

19._AMAZ_3_/2

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 7
 Dapeng Zhang, 2016

20._AMAZ_3_/2

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 16
 Dapeng Zhang, 2016

21._AMAZ_3_/2 RUQ_91

97.4 %
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

22._AMAZ_3_/2 RUQ_91

96.8 %
31 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP154 93TcSNP240