SNP Profiles matching AMAZ 3 /2

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AACCAAGGGGTTCCCCCTGGTTCCTTAT
1._GC-03-022-2-11
AACCAAGGGGTTCCCCCTGGTTCCTTAT
2._GC-03-022-2-11
AACCAAGGGGTTCCCCCTGGTTCCTTAT
3._GC-03-022-2-11
AACCAAGGGGTTCCCCCTGGTTCCTTAT
4._GC-03-022-2-11
AACCAAGGGGTTCCCCCTGGTTCCTTAT
5._GC-03-022-2-11
AACCAAGGGGTTCCCCCTGGTTCCTTAT
6._GC-03-022-2-11
AACCAAGGGGTTCCCCCTGGTTCCTTAT
7._GC-03-022-2-11
AACCAAGGGGTTCCCCCTGGTTCCTTAT
8._GC-03-022-2-11
AACCAAGGGGTTCCCCCTGGTTCCTTAT
9._GC-03-022-2-11
AACCAAGGGGTTCCCCCTGGTTCCTTAT
10._AMAZ_3_/2
AACCAA________CCCTGG__CC____
11._AMAZ_3_/2
AACCAA________CCCTGG__CC____
12._AMAZ_3_/2
AACCAA________CCCTGG__CC____
13._AMAZ_3_/2
AACCAA________CCCTGG__CC____
14._AMAZ_3_/2
AACCAA________CCCTGG__CC____
15._AMAZ_3_/2
AACCAA________CCCTGG__CC____
16._AMAZ_3_/2
AACCAA________CCCTGG__CC____
17._AMAZ_3_/2
AACCAA________CCCTGG__CC____
18._AMAZ_3_/2
AACCAA________CCCTGG__CC____
19._AMAZ_3_/2
AACCAA________CCCTGG__CC____
20._AMAZ_3_/2
AACCAA________CCCTGG__CC____
21._RUQ_91
AACCAA________CTCTGG__CC____
22._RUQ_91
__CCAA____TT__CC____TTCC____
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CCAAGGCGCGGGCCAATTGGATATCCCG
1._GC-03-022-2-11
CCAAGGCGCGGGCCAATTGGATATCCCG
2._GC-03-022-2-11
CCAAGGCGCGGGCCAATTGGATATCCCG
3._GC-03-022-2-11
CCAAGGCGCGGGCCAATTGGATATCCCG
4._GC-03-022-2-11
CCAAGGCGCGGGCCAATTGGATATCCCG
5._GC-03-022-2-11
CCAAGGCGCGGGCCAATTGGATATCCCG
6._GC-03-022-2-11
CCAAGGCGCGGGCCAATTGGATATCCCG
7._GC-03-022-2-11
CCAAGGCGCGGGCCAATTGGATATCCCG
8._GC-03-022-2-11
CCAAGGCGCGGGCCAATTGGATATCCCG
9._GC-03-022-2-11
CCAAGGCGCGGGCCAATTGGATATCCCG
10._AMAZ_3_/2
____GG____GG________ATAT__CG
11._AMAZ_3_/2
____GG____GG________ATAT__CG
12._AMAZ_3_/2
____GG____GG________ATAT__CG
13._AMAZ_3_/2
____GG____GG________ATAT__CG
14._AMAZ_3_/2
____GG____GG________ATAT__CG
15._AMAZ_3_/2
____GG____GG________ATAT__CG
16._AMAZ_3_/2
____GG____GG________ATAT__CG
17._AMAZ_3_/2
____GG____GG________ATAT__CG
18._AMAZ_3_/2
____GG____GG________ATAT__CG
19._AMAZ_3_/2
____GG____GG________ATAT__CG
20._AMAZ_3_/2
____GG____GG________ATAT__CG
21._RUQ_91
____GG____GG________ATAT__CG
22._RUQ_91
________CG________GG__AT____
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
ATTTGTGGCCAAGTGGTTAATTAGCCGG
1._GC-03-022-2-11
ATTTGTGGCCAAGTGGTTAATTAGCCGG
2._GC-03-022-2-11
ATTTGTGGCCAAGTGGTTAATTAGCCGG
3._GC-03-022-2-11
ATTTGTGGCCAAGTGGTTAATTAGCCGG
4._GC-03-022-2-11
ATTTGTGGCCAAGTGGTTAATTAGCCGG
5._GC-03-022-2-11
ATTTGTGGCCAAGTGGTTAATTAGCCGG
6._GC-03-022-2-11
ATTTGTGGCCAAGTGGTTAATTAGCCGG
7._GC-03-022-2-11
ATTTGTGGCCAAGTGGTTAATTAGCCGG
8._GC-03-022-2-11
ATTTGTGGCCAAGTGGTTAATTAGCCGG
9._GC-03-022-2-11
ATTTGTGGCCAAGTGGTT__TTAGCCGG
10._AMAZ_3_/2
AT________AAGT____AA________
11._AMAZ_3_/2
AT________AAGT____AA________
12._AMAZ_3_/2
AT________AAGT____AA________
13._AMAZ_3_/2
AT________AAGT____AA________
14._AMAZ_3_/2
AT________AAGT____AA________
15._AMAZ_3_/2
AT________AAGT____AA________
16._AMAZ_3_/2
AT________AAGT____AA________
17._AMAZ_3_/2
AT________AAGT____AA________
18._AMAZ_3_/2
AT________AAGT______________
19._AMAZ_3_/2
AT________AAGT____AA________
20._AMAZ_3_/2
AT________AAGT____AA________
21._RUQ_91
AT________AAGT____AG________
22._RUQ_91
______AACCAAGT____AATT____GG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
TTTTAAGGAACCACGGAATTTTCCCCTT
1._GC-03-022-2-11
TTTTAAGGAACCACGGAATTTTCCCCTT
2._GC-03-022-2-11
TTTTAAGGAACCACGGAATTTTCCCCTT
3._GC-03-022-2-11
TTTTAAGGAACCACGGAATTTTCCCCTT
4._GC-03-022-2-11
TTTTAAGGAACCACGGAATTTTCCCCTT
5._GC-03-022-2-11
TTTTAAGGAACCACGGAATTTTCCCCTT
6._GC-03-022-2-11
TTTTAAGGAACCACGGAATTTTCCCCTT
7._GC-03-022-2-11
TTTTAAGGAACCACGGAATTTT__CCTT
8._GC-03-022-2-11
TTTTAAGGAACCACGGAATTTTCCCCTT
9._GC-03-022-2-11
TTTTAAGGAACCACGGAATTTTCCCCTT
10._AMAZ_3_/2
__TT__________________CCCC__
11._AMAZ_3_/2
__TT__________________CCCC__
12._AMAZ_3_/2
__TT__________________CCCC__
13._AMAZ_3_/2
__TT__________________CCCC__
14._AMAZ_3_/2
__TT__________________CCCC__
15._AMAZ_3_/2
__TT__________________CCCC__
16._AMAZ_3_/2
__TT__________________CCCC__
17._AMAZ_3_/2
__TT__________________CCCC__
18._AMAZ_3_/2
__TT__________________CCCC__
19._AMAZ_3_/2
__TT__________________CCCC__
20._AMAZ_3_/2
__TT____________________CC__
21._RUQ_91
__TT__________________CCCC__
22._RUQ_91
TT____GG____________TTCC__TT
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GGGGCCTTAAGGGGAAAAGGGTAATTCG
1._GC-03-022-2-11
GGGGCCTTAAGGGGAAAAGGGTAATTCG
2._GC-03-022-2-11
GGGGCCTTAAGGGGAAAAGGGTAATTCG
3._GC-03-022-2-11
GGGGCCTTAAGGGGAAAAGGGTAATTCG
4._GC-03-022-2-11
GGGGCCTTAAGGGGAAAAGGGTAATTCG
5._GC-03-022-2-11
GGGGCCTTAAGGGGAAAAGGGTAATTCG
6._GC-03-022-2-11
GGGGCCTTAAGGGGAAAAGGGTAATTCG
7._GC-03-022-2-11
GGGGCCTTAAGGGGAAAAGGGTAATTCG
8._GC-03-022-2-11
GGGGCCTTAAGGGGAAAAGGGTAATTCG
9._GC-03-022-2-11
GGGGCCTTAAGGGGAAAAGGGTAATTCG
10._AMAZ_3_/2
__GG__TTAAGG__AAAAGGGT______
11._AMAZ_3_/2
__GG__TTAAGG__AAAAGGGT______
12._AMAZ_3_/2
__GG__TTAAGG__AAAAGGGT______
13._AMAZ_3_/2
__GG__TTAAGG__AAAAGGGT______
14._AMAZ_3_/2
__GG__TTAAGG__AAAAGGGT______
15._AMAZ_3_/2
__GG__TTAAGG__AAAAGGGT______
16._AMAZ_3_/2
__GG__TTAAGG__AAAAGGGT______
17._AMAZ_3_/2
__GG__TTAAGG__AAAAGGGT______
18._AMAZ_3_/2
__GG__TTAAGG__AAAAGGGT______
19._AMAZ_3_/2
__GG__TTAAGG__AAAAGGGT______
20._AMAZ_3_/2
__GG__TTAAGG__AAAAGGGT______
21._RUQ_91
__GG__TTAAGG__AAAAGGGT______
22._RUQ_91
__GG____AA__GGAAAA__GT______
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
AACTACAACCCCAACCCCCCAAAACCCT
1._GC-03-022-2-11
AACTACAACCCCAACCCCCCAAAACCCT
2._GC-03-022-2-11
AACTACAACCCCAACCCCCCAAAACCCT
3._GC-03-022-2-11
AACTACAACCCCAACCCCCCAAAACCCT
4._GC-03-022-2-11
AACTACAACCCCAACCCCCCAAAACCCT
5._GC-03-022-2-11
AACTACAACCCCAACCCCCCAAAACCCT
6._GC-03-022-2-11
AACTACAACCCCAACCCCCCAAAACCCT
7._GC-03-022-2-11
AACTACAACCCCAACCCCCCAAAACCCT
8._GC-03-022-2-11
AACTACAACCCCAACCCCCCAAAACCCT
9._GC-03-022-2-11
AACTACAACCCCAACCCCCCAAAACCCT
10._AMAZ_3_/2
AACT__________CCCC______CCCT
11._AMAZ_3_/2
AACT__________CCCC______CCCT
12._AMAZ_3_/2
AACT__________CCCC______CCCT
13._AMAZ_3_/2
AACT__________CCCC______CCCT
14._AMAZ_3_/2
AACT__________CCCC______CCCT
15._AMAZ_3_/2
AACT__________CCCC______CCCT
16._AMAZ_3_/2
AACT__________CCCC______CCCT
17._AMAZ_3_/2
AACT__________CCCC______CCCT
18._AMAZ_3_/2
AACT__________CCCC______CCCT
19._AMAZ_3_/2
AACT__________CCCC______CCCT
20._AMAZ_3_/2
AACT__________CCCC______CCCT
21._RUQ_91
AACT__________CCCC______CCCT
22._RUQ_91
______________CCCC______CC__
 85 86 87 88 89 90 91 92 93      
_Input profile
CCCTAACCTTTTTTATGGX_XX_XX_XX_XX_X
1._GC-03-022-2-11
CCCTAACCTTTTTTATGGX_XX_XX_XX_XX_X
2._GC-03-022-2-11
CCCTAACCTTTTTTATGGX_XX_XX_XX_XX_X
3._GC-03-022-2-11
CCCTAACCTTTTTTATGGX_XX_XX_XX_XX_X
4._GC-03-022-2-11
CCCTAACCTTTTTTATGGX_XX_XX_XX_XX_X
5._GC-03-022-2-11
CCCTAACCTTTTTTATGGX_XX_XX_XX_XX_X
6._GC-03-022-2-11
CCCTAACCTTTTTTATGGX_XX_XX_XX_XX_X
7._GC-03-022-2-11
CCCTAACCTTTTTTATGGX_XX_XX_XX_XX_X
8._GC-03-022-2-11
CCCTAACCTTTT__ATGGX_XX_XX_XX_XX_X
9._GC-03-022-2-11
CCCTAACCTTTTTTATGGX_XX_XX_XX_XX_X
10._AMAZ_3_/2
CC__AA__TTTTTT____X_XX_XX_XX_XX_X
11._AMAZ_3_/2
CC__AA__TTTTTT____X_XX_XX_XX_XX_X
12._AMAZ_3_/2
CC__AA__TTTTTT____X_XX_XX_XX_XX_X
13._AMAZ_3_/2
CC__AA__TTTTTT____X_XX_XX_XX_XX_X
14._AMAZ_3_/2
CC__AA__TTTTTT____X_XX_XX_XX_XX_X
15._AMAZ_3_/2
CC__AA__TTTTTT____X_XX_XX_XX_XX_X
16._AMAZ_3_/2
CC__AA__TTTTTT____X_XX_XX_XX_XX_X
17._AMAZ_3_/2
CC__AA__TTTTTT____X_XX_XX_XX_XX_X
18._AMAZ_3_/2
CC__AA__TTTTTT____X_XX_XX_XX_XX_X
19._AMAZ_3_/2
CC__AA__TTTT______X_XX_XX_XX_XX_X
20._AMAZ_3_/2
CC__AA__TTTTTT____X_XX_XX_XX_XX_X
21._RUQ_91
CC__AA__TTTTTT____X_XX_XX_XX_XX_X
22._RUQ_91
__________TT______X_XX_XX_XX_XX_X

Input profile: AMAZ_3_/2 GC-03-022-2-11

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

1._AMAZ_3_/2 GC-03-022-2-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP4
 Mars, 2018

2._AMAZ_3_/2 GC-03-022-2-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

3._AMAZ_3_/2 GC-03-022-2-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

4._AMAZ_3_/2 GC-03-022-2-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

5._AMAZ_3_/2 GC-03-022-2-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP2
 Mars, 2018

6._AMAZ_3_/2 GC-03-022-2-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

7._AMAZ_3_/2 GC-03-022-2-11

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

8._AMAZ_3_/2 GC-03-022-2-11

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

9._AMAZ_3_/2 GC-03-022-2-11

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

10._AMAZ_3_/2

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 5 > FP
 Dapeng Zhang, 2016

11._AMAZ_3_/2

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 14 > F
 Dapeng Zhang, 2016

12._AMAZ_3_/2

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 1 > FP
 Dapeng Zhang, 2016

13._AMAZ_3_/2

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 15
 Dapeng Zhang, 2016

14._AMAZ_3_/2

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 13
 Dapeng Zhang, 2016

15._AMAZ_3_/2

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 12
 Dapeng Zhang, 2016

16._AMAZ_3_/2

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 8
 Dapeng Zhang, 2016

17._AMAZ_3_/2

identical
38 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P97 225
 Dapeng Zhang, 2016

18._AMAZ_3_/2

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 16
 Dapeng Zhang, 2016

19._AMAZ_3_/2

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 9
 Dapeng Zhang, 2016

20._AMAZ_3_/2

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 7
 Dapeng Zhang, 2016

21._AMAZ_3_/2 RUQ_91

97.4 %
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

22._AMAZ_3_/2 RUQ_91

96.8 %
31 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP860 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240