SNP Profiles matching AMAZ 3 /2

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAAACCAAGGGGTTCCCCCTGGTTCCTT
1._GC-03-022-2-11
AAAACCAAGGGGTTCCCCCTGGTTCCTT
2._GC-03-022-2-11
AAAACCAAGGGGTTCCCCCTGGTTCCTT
3._GC-03-022-2-11
AAAACCAAGGGGTTCCCCCTGGTTCCTT
4._GC-03-022-2-11
AAAACCAAGGGGTTCCCCCTGGTTCCTT
5._GC-03-022-2-11
AAAACCAAGGGGTTCCCCCTGGTTCCTT
6._GC-03-022-2-11
AAAACCAAGGGGTTCCCCCTGGTTCCTT
7._GC-03-022-2-11
AA__CCAAGGGGTTCCCCCTGGTTCCTT
8._GC-03-022-2-11
AAAACCAAGGGGTTCCCCCTGGTTCCTT
9._GC-03-022-2-11
AAAACCAAGGGGTTCCCCCTGGTTCCTT
10._AMAZ_3_/2
AAAACCAA________CCCTGG__CC__
11._AMAZ_3_/2
AAAACCAA________CCCTGG__CC__
12._AMAZ_3_/2
AAAACCAA________CCCTGG__CC__
13._AMAZ_3_/2
AAAACCAA________CCCTGG__CC__
14._AMAZ_3_/2
AAAACCAA________CCCTGG__CC__
15._AMAZ_3_/2
AAAACCAA________CCCTGG__CC__
16._AMAZ_3_/2
AAAACCAA________CCCTGG__CC__
17._AMAZ_3_/2
AAAACCAA________CCCTGG__CC__
18._AMAZ_3_/2
AAAACCAA________CCCTGG__CC__
19._AMAZ_3_/2
AA__CCAA________CCCTGG__CC__
20._AMAZ_3_/2
AAAACCAA________CCCTGG__CC__
21._RUQ_91
AAAACCAA________CTCTGG__CC__
22._RUQ_91
____CCAA____TT__CC____TTCC__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
ATCCAAGGCGCGGGCCAATTGGATATCC
1._GC-03-022-2-11
ATCCAAGGCGCGGGCCAATTGGATATCC
2._GC-03-022-2-11
ATCCAAGGCGCGGGCCAATTGGATATCC
3._GC-03-022-2-11
ATCCAAGGCGCGGGCCAATTGGATATCC
4._GC-03-022-2-11
ATCCAAGGCGCGGGCCAATTGGATATCC
5._GC-03-022-2-11
ATCCAAGGCGCGGGCCAATTGGATATCC
6._GC-03-022-2-11
ATCCAAGGCGCGGGCCAATTGGATATCC
7._GC-03-022-2-11
ATCCAAGGCGCGGGCCAATTGGATATCC
8._GC-03-022-2-11
ATCCAAGGCGCGGGCCAATTGGATATCC
9._GC-03-022-2-11
ATCCAAGGCGCGGGCCAATTGGATATCC
10._AMAZ_3_/2
______GG____GG________ATAT__
11._AMAZ_3_/2
______GG____GG________ATAT__
12._AMAZ_3_/2
______GG____GG________ATAT__
13._AMAZ_3_/2
______GG____GG________ATAT__
14._AMAZ_3_/2
______GG____GG________ATAT__
15._AMAZ_3_/2
______GG____GG________ATAT__
16._AMAZ_3_/2
______GG____GG________ATAT__
17._AMAZ_3_/2
______GG____GG________ATAT__
18._AMAZ_3_/2
______GG____GG________ATAT__
19._AMAZ_3_/2
______GG____GG________ATAT__
20._AMAZ_3_/2
______GG____GG________ATAT__
21._RUQ_91
______GG____GG________ATAT__
22._RUQ_91
__________CG________GG__AT__
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CGATTTGTGGCCAAGTGGTTAATTAGCC
1._GC-03-022-2-11
CGATTTGTGGCCAAGTGGTTAATTAGCC
2._GC-03-022-2-11
CGATTTGTGGCCAAGTGGTTAATTAGCC
3._GC-03-022-2-11
CGATTTGTGGCCAAGTGGTTAATTAGCC
4._GC-03-022-2-11
CGATTTGTGGCCAAGTGGTTAATTAGCC
5._GC-03-022-2-11
CGATTTGTGGCCAAGTGGTTAATTAGCC
6._GC-03-022-2-11
CGATTTGTGGCCAAGTGGTTAATTAGCC
7._GC-03-022-2-11
CGATTTGTGGCCAAGTGGTTAATTAGCC
8._GC-03-022-2-11
CGATTTGTGGCCAAGTGGTTAATTAGCC
9._GC-03-022-2-11
CGATTTGTGGCCAAGTGGTT__TTAGCC
10._AMAZ_3_/2
CGAT________AAGT____AA______
11._AMAZ_3_/2
CGAT________AAGT____AA______
12._AMAZ_3_/2
CGAT________AAGT____AA______
13._AMAZ_3_/2
CGAT________AAGT____AA______
14._AMAZ_3_/2
CGAT________AAGT____AA______
15._AMAZ_3_/2
CGAT________AAGT____AA______
16._AMAZ_3_/2
CGAT________AAGT____AA______
17._AMAZ_3_/2
CGAT________AAGT____________
18._AMAZ_3_/2
CGAT________AAGT____AA______
19._AMAZ_3_/2
CGAT________AAGT____AA______
20._AMAZ_3_/2
CGAT________AAGT____AA______
21._RUQ_91
CGAT________AAGT____AG______
22._RUQ_91
________AACCAAGT____AATT____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGTTTTAAGGAACCACGGAATTTTCCCC
1._GC-03-022-2-11
GGTTTTAAGGAACCACGGAATTTTCCCC
2._GC-03-022-2-11
GGTTTTAAGGAACCACGGAATTTTCCCC
3._GC-03-022-2-11
GGTTTTAAGGAACCACGGAATTTTCCCC
4._GC-03-022-2-11
GGTTTTAAGGAACCACGGAATTTTCCCC
5._GC-03-022-2-11
GGTTTTAAGGAACCACGGAATTTTCCCC
6._GC-03-022-2-11
GGTTTTAAGGAACCACGGAATTTT__CC
7._GC-03-022-2-11
GGTTTTAAGGAACCACGGAATTTTCCCC
8._GC-03-022-2-11
GGTTTTAAGGAACCACGGAATTTTCCCC
9._GC-03-022-2-11
GGTTTTAAGGAACCACGGAATTTTCCCC
10._AMAZ_3_/2
____TT__________________CCCC
11._AMAZ_3_/2
____TT__________________CCCC
12._AMAZ_3_/2
____TT__________________CCCC
13._AMAZ_3_/2
____TT__________________CCCC
14._AMAZ_3_/2
____TT__________________CCCC
15._AMAZ_3_/2
____TT__________________CCCC
16._AMAZ_3_/2
____TT__________________CCCC
17._AMAZ_3_/2
____TT__________________CCCC
18._AMAZ_3_/2
____TT__________________CCCC
19._AMAZ_3_/2
____TT__________________CCCC
20._AMAZ_3_/2
____TT____________________CC
21._RUQ_91
____TT__________________CCCC
22._RUQ_91
GGTT____GG____________TTCC__
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
TTGGGGCCTTAAGGGGAAAAGGGTAATT
1._GC-03-022-2-11
TTGGGGCCTTAAGGGGAAAAGGGTAATT
2._GC-03-022-2-11
TTGGGGCCTTAAGGGGAAAAGGGTAATT
3._GC-03-022-2-11
TTGGGGCCTTAAGGGGAAAAGGGTAATT
4._GC-03-022-2-11
TTGGGGCCTTAAGGGGAAAAGGGTAATT
5._GC-03-022-2-11
TTGGGGCCTTAAGGGGAAAAGGGTAATT
6._GC-03-022-2-11
TTGGGGCCTTAAGGGGAAAAGGGTAATT
7._GC-03-022-2-11
TTGGGGCCTTAAGGGGAAAAGGGTAATT
8._GC-03-022-2-11
TTGGGGCCTTAAGGGGAAAAGGGTAATT
9._GC-03-022-2-11
TTGGGGCCTTAAGGGGAAAAGGGTAATT
10._AMAZ_3_/2
____GG__TTAAGG__AAAAGGGT____
11._AMAZ_3_/2
____GG__TTAAGG__AAAAGGGT____
12._AMAZ_3_/2
____GG__TTAAGG__AAAAGGGT____
13._AMAZ_3_/2
____GG__TTAAGG__AAAAGGGT____
14._AMAZ_3_/2
____GG__TTAAGG__AAAAGGGT____
15._AMAZ_3_/2
____GG__TTAAGG__AAAAGGGT____
16._AMAZ_3_/2
____GG__TTAAGG__AAAAGGGT____
17._AMAZ_3_/2
____GG__TTAAGG__AAAAGGGT____
18._AMAZ_3_/2
____GG__TTAAGG__AAAAGGGT____
19._AMAZ_3_/2
____GG__TTAAGG__AAAAGGGT____
20._AMAZ_3_/2
____GG__TTAAGG__AAAAGGGT____
21._RUQ_91
____GG__TTAAGG__AAAAGGGT____
22._RUQ_91
TT__GG____AA__GGAAAA__GT____
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CGAACTACAACCCCAACCCCCCAAAACC
1._GC-03-022-2-11
CGAACTACAACCCCAACCCCCCAAAACC
2._GC-03-022-2-11
CGAACTACAACCCCAACCCCCCAAAACC
3._GC-03-022-2-11
CGAACTACAACCCCAACCCCCCAAAACC
4._GC-03-022-2-11
CGAACTACAACCCCAACCCCCCAAAACC
5._GC-03-022-2-11
CGAACTACAACCCCAACCCCCCAAAACC
6._GC-03-022-2-11
CGAACTACAACCCCAACCCCCCAAAACC
7._GC-03-022-2-11
CGAACTACAACCCCAACCCCCCAAAACC
8._GC-03-022-2-11
CGAACTACAACCCCAACCCCCCAAAACC
9._GC-03-022-2-11
CGAACTACAACCCCAACCCCCCAAAACC
10._AMAZ_3_/2
__AACT__________CCCC______CC
11._AMAZ_3_/2
__AACT__________CCCC______CC
12._AMAZ_3_/2
__AACT__________CCCC______CC
13._AMAZ_3_/2
__AACT__________CCCC______CC
14._AMAZ_3_/2
__AACT__________CCCC______CC
15._AMAZ_3_/2
__AACT__________CCCC______CC
16._AMAZ_3_/2
__AACT__________CCCC______CC
17._AMAZ_3_/2
__AACT__________CCCC______CC
18._AMAZ_3_/2
__AACT__________CCCC______CC
19._AMAZ_3_/2
__AACT__________CCCC______CC
20._AMAZ_3_/2
__AACT__________CCCC______CC
21._RUQ_91
__AACT__________CCCC______CC
22._RUQ_91
________________CCCC______CC
 85 86 87 88 89 90 91 92 93 94     
_Input profile
CTCCCTAACCTTTTTTATGGX_XX_XX_XX_X
1._GC-03-022-2-11
CTCCCTAACCTTTTTTATGGX_XX_XX_XX_X
2._GC-03-022-2-11
CTCCCTAACCTTTTTTATGGX_XX_XX_XX_X
3._GC-03-022-2-11
CTCCCTAACCTTTTTTATGGX_XX_XX_XX_X
4._GC-03-022-2-11
CTCCCTAACCTTTTTTATGGX_XX_XX_XX_X
5._GC-03-022-2-11
CTCCCTAACCTTTTTTATGGX_XX_XX_XX_X
6._GC-03-022-2-11
CTCCCTAACCTTTTTTATGGX_XX_XX_XX_X
7._GC-03-022-2-11
CTCCCTAACCTTTTTTATGGX_XX_XX_XX_X
8._GC-03-022-2-11
CTCCCTAACCTTTT__ATGGX_XX_XX_XX_X
9._GC-03-022-2-11
CTCCCTAACCTTTTTTATGGX_XX_XX_XX_X
10._AMAZ_3_/2
CTCC__AA__TTTTTT____X_XX_XX_XX_X
11._AMAZ_3_/2
CTCC__AA__TTTTTT____X_XX_XX_XX_X
12._AMAZ_3_/2
CTCC__AA__TTTTTT____X_XX_XX_XX_X
13._AMAZ_3_/2
CTCC__AA__TTTTTT____X_XX_XX_XX_X
14._AMAZ_3_/2
CTCC__AA__TTTTTT____X_XX_XX_XX_X
15._AMAZ_3_/2
CTCC__AA__TTTTTT____X_XX_XX_XX_X
16._AMAZ_3_/2
CTCC__AA__TTTTTT____X_XX_XX_XX_X
17._AMAZ_3_/2
CTCC__AA__TTTTTT____X_XX_XX_XX_X
18._AMAZ_3_/2
CTCC__AA__TTTT______X_XX_XX_XX_X
19._AMAZ_3_/2
CTCC__AA__TTTTTT____X_XX_XX_XX_X
20._AMAZ_3_/2
CTCC__AA__TTTTTT____X_XX_XX_XX_X
21._RUQ_91
CTCC__AA__TTTTTT____X_XX_XX_XX_X
22._RUQ_91
____________TT______X_XX_XX_XX_X

Input profile: AMAZ_3_/2 GC-03-022-2-11

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

1._AMAZ_3_/2 GC-03-022-2-11

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP4
 Mars, 2018

2._AMAZ_3_/2 GC-03-022-2-11

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

3._AMAZ_3_/2 GC-03-022-2-11

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

4._AMAZ_3_/2 GC-03-022-2-11

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP2
 Mars, 2018

5._AMAZ_3_/2 GC-03-022-2-11

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

6._AMAZ_3_/2 GC-03-022-2-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

7._AMAZ_3_/2 GC-03-022-2-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

8._AMAZ_3_/2 GC-03-022-2-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

9._AMAZ_3_/2 GC-03-022-2-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

10._AMAZ_3_/2

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 5 > FP
 Dapeng Zhang, 2016

11._AMAZ_3_/2

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 14 > F
 Dapeng Zhang, 2016

12._AMAZ_3_/2

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 1 > FP
 Dapeng Zhang, 2016

13._AMAZ_3_/2

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 15
 Dapeng Zhang, 2016

14._AMAZ_3_/2

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 13
 Dapeng Zhang, 2016

15._AMAZ_3_/2

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 12
 Dapeng Zhang, 2016

16._AMAZ_3_/2

identical
39 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P97 225
 Dapeng Zhang, 2016

17._AMAZ_3_/2

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 16
 Dapeng Zhang, 2016

18._AMAZ_3_/2

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 9
 Dapeng Zhang, 2016

19._AMAZ_3_/2

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 8
 Dapeng Zhang, 2016

20._AMAZ_3_/2

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 7
 Dapeng Zhang, 2016

21._AMAZ_3_/2 RUQ_91

97.4 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

22._AMAZ_3_/2 RUQ_91

96.8 %
31 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240