SNP Profiles matching PA 150 [PER]

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 Key

 1234567891011121314
_Input profile
AAACCCCCGGGGCTCCCCCCGGTTCCTT
1._GC-01-034-2-11
AAACCCCCGGGGCTCCCCCCGGTTCCTT
2._GC-01-034-2-11
AAACCCCCGGGGCTCCCCCCGGTTCCTT
3._GC-01-034-2-11
AAACCCCCGGGGCTCCCCCCGGTTCCTT
4._GC-03-032-3-11
AAACCCCCGGGGCTCCCCCCGGTTCCTT
5._GC-03-032-3-11
AAACCCCCGGGGCTCCCCCCGGTTCCTT
6._EET_272_[ECU]
AAACCCCC________CCCCGG__CC__
7._PA_150_[PER]
AAACCCCC________CCCCGG__CC__
8._PA_150_[PER]
AAACCCCC________CCCCGG__CC__
9._PA_150_[PER]
AAACCCCC________CCCCGG__CC__
10._PA_150_[PER]
AAACCCCC________CCCCGG__CC__
11._EET_272_[ECU]
AAACCCCC________CCCCGG__CC__
12._RUQ_1436
____CCCC____TT__CC____TTCC__
13._GC-07-077-4-21
AAACCCCCGGGGCTCCCCCCGGTTCCTT
14._EQX_/O_[CHA]
AAACCCCC________CCCCGG__CC__
15._RUQ_32
____CTCC____CT__CC____TTCC__
16._RUQ_1576
____CCCC____CT__CC____TTCC__
17._RUQ_1569
____CTCC____CT__CC____TTCC__
18._RUQ_1642
____CCCC____CT__CC____TTCC__
19._RUQ_1642
____CCCC____CT__CC____TTCC__
20._RUQ_1564
____CTCC____CT__CC____TTCC__
 1516171819202122232425262728
_Input profile
AACCAGCGCCCCTTAATTGGATAACCGG
1._GC-01-034-2-11
AACCAGCGCCCCTTAATTGGATAACCGG
2._GC-01-034-2-11
AACCAGCGCCCCTTAATTGGATAACCGG
3._GC-01-034-2-11
AACCAGCGCCCCTTAATTGGATAACCGG
4._GC-03-032-3-11
AACCAGCGCCCCTTAATTGGATAACCGG
5._GC-03-032-3-11
AACCAGCGCCCCTTAATTGGATAACCGG
6._EET_272_[ECU]
____AG____CC________ATAA__GG
7._PA_150_[PER]
____AG____CC________ATAA__GG
8._PA_150_[PER]
____AG____CC________ATAA__GG
9._PA_150_[PER]
____AG____CC________ATAA__GG
10._PA_150_[PER]
____AG____CC________ATAA__GG
11._EET_272_[ECU]
____AG____CC________ATAA__GG
12._RUQ_1436
________CC________GG__AACCGG
13._GC-07-077-4-21
AACCAGCCCCCCTTAATTGGATAACCGG
14._EQX_/O_[CHA]
____AG____CC________ATAA__GG
15._RUQ_32
________CC________GG__AACCGG
16._RUQ_1576
________CC________GG__AACCGG
17._RUQ_1569
________CC________GG__AACCGG
18._RUQ_1642
________CC________GG__AACCGG
19._RUQ_1642
________CC________GG__AACCGG
20._RUQ_1564
________CC________GG__AACCGG
 2930313233343536373839404142
_Input profile
AATTGTGGCGCCAGGGGGTTGGCTAGCC
1._GC-01-034-2-11
AATTGTGGCGCCAGGGGGTTGGCTAGCC
2._GC-01-034-2-11
AATTGTGGCGCCAGGGGGTTGGCTAGCC
3._GC-01-034-2-11
AATTGTGGCGCCAGGGGGTTGGCTAGCC
4._GC-03-032-3-11
AATTGTGGCGCCAGGGGGTTGGCTAGCC
5._GC-03-032-3-11
AATTGTGGCGCCAGGGGGTTGGCTAGCC
6._EET_272_[ECU]
AA______CG__AGGG____GG______
7._PA_150_[PER]
AA______CG__AGGG____GG______
8._PA_150_[PER]
AA______CG__AGGG____GG______
9._PA_150_[PER]
AA______CG__AGGG____GG______
10._PA_150_[PER]
AA______CG__AGGG____GG______
11._EET_272_[ECU]
AA______CG__AGGG____GG______
12._RUQ_1436
______GGCGCCAGGG____GGCT____
13._GC-07-077-4-21
AATTGTGGCGCC__GGGGTTGGCCAGCC
14._EQX_/O_[CHA]
AA______CG____GG____GG______
15._RUQ_32
______GGCGCCAGGG____GGTT____
16._RUQ_1576
______GGCGCCAGGG____GGTT____
17._RUQ_1569
______GGCGCCAGGG____AGTT____
18._RUQ_1642
______GGCGCCAGGG____GGTT____
19._RUQ_1642
______GGCGCCAGGG____GGTT____
20._RUQ_1564
______GGCGCCAGGG____AGTT____
 4344454647484950515253545556
_Input profile
GGTTCTAAGGAACCCCGGAAGGTTCCCT
1._GC-01-034-2-11
GGTTCTAAGGAACCCCGGAAGGTTCCCT
2._GC-01-034-2-11
GGTTCTAAGGAACCCCGGAAGGTTCCCT
3._GC-01-034-2-11
GGTTCTAAGGAACCCCGGAAGGTTCCCT
4._GC-03-032-3-11
GGTTCTAAGGAACCCCGGAAGGTTCCCT
5._GC-03-032-3-11
GGTTCTAAGGAACC__GGAAGGTTCCCT
6._EET_272_[ECU]
____CT__________________CCCT
7._PA_150_[PER]
____CT__________________CCCT
8._PA_150_[PER]
____CT__________________CCCT
9._PA_150_[PER]
____CT__________________CCCT
10._PA_150_[PER]
____CT__________________CCCT
11._EET_272_[ECU]
____CT__________________CCCT
12._RUQ_1436
GGTT____GG____________TTCC__
13._GC-07-077-4-21
GGTTCCAAGGAACCCCGGAAGGTTCCCC
14._EQX_/O_[CHA]
____CC__________________CCCC
15._RUQ_32
GGTT____GG____________CTCC__
16._RUQ_1576
GGTT____GG____________TTCC__
17._RUQ_1569
GGTT____GG____________CTCC__
18._RUQ_1642
GGTT____GG____________TTCC__
19._RUQ_1642
GGTT____GG____________TTCC__
20._RUQ_1564
GGTT____GG____________CTCC__
 5758596061626364656667686970
_Input profile
TTGGCCCCCCAAGGGGCCAGGTGGAGTT
1._GC-01-034-2-11
TTGGCCCCCCAAGGGGCCAGGTGGAGTT
2._GC-01-034-2-11
TTGGCCCCCCAAGGGGCCAGGTGGAGTT
3._GC-01-034-2-11
TTGGCCCCCCAAGGGGCCAGGTGGAGTT
4._GC-03-032-3-11
TTGGCCCCCC__GGGGCCAGGTGGAGTT
5._GC-03-032-3-11
TTGGCCCCCCAAGGGGCCAGGTGGAGTT
6._EET_272_[ECU]
____CC__CCAAGG__CCAGGTGG____
7._PA_150_[PER]
____CC__CCAAGG__CCAGGTGG____
8._PA_150_[PER]
____CC__CCAAGG__CCAGGTGG____
9._PA_150_[PER]
____CC__CCAAGG__CCAGGTGG____
10._PA_150_[PER]
____CC__CCAAGG__CCAGGTGG____
11._EET_272_[ECU]
____CC__CC__GG__CCAGGTGG____
12._RUQ_1436
TT__CCCCCCAC__GGCCAGGTGGAG__
13._GC-07-077-4-21
TTGGCCCCCCCCGGGGCCAGGTGGAGTT
14._EQX_/O_[CHA]
____CC__CCCCGG__CCAGGTGG____
15._RUQ_32
TT__CCCCCTAC__GGCCAGGTGGAG__
16._RUQ_1576
TTGGCCCCCCCC__GGACGGGGGGAG__
17._RUQ_1569
TT__CCCTCCAA__GGACAGGTGGGG__
18._RUQ_1642
TT__CCCCCCCC__GGACGGGGGGAG__
19._RUQ_1642
TT__CCCCCCCC__GGACGGGGGGAG__
20._RUQ_1564
TT__CCCTCCAA__GGACAGGTGGGG__
 7172737475767778798081828384
_Input profile
CCAGCTCCAGACCCAAACGGCCTTAATT
1._GC-01-034-2-11
CCAGCTCCAGACCCAAACGGCCTTAATT
2._GC-01-034-2-11
CCAGCTCCAGACCCAAACGGCCTTAATT
3._GC-01-034-2-11
CCAGCTCCAGACCCAAACGGCCTTAATT
4._GC-03-032-3-11
CCAGCTCCAGACCCAAACGGCCTTAATT
5._GC-03-032-3-11
CCAGCTCCAGACCCAAACGGCCTTAATT
6._EET_272_[ECU]
__AGCT__________ACGG______TT
7._PA_150_[PER]
__AGCT__________ACGG______TT
8._PA_150_[PER]
__AGCT__________ACGG______TT
9._PA_150_[PER]
__AGCT__________ACGG______TT
10._PA_150_[PER]
__AGCT__________ACGG______TT
11._EET_272_[ECU]
__AGCT__________ACGG______TT
12._RUQ_1436
________________ACGG____AATT
13._GC-07-077-4-21
CCAGCTCCAGAACCAAACGGCCTTAATT
14._EQX_/O_[CHA]
__AGCT__________ACGG______TT
15._RUQ_32
________________ACCG____AATT
16._RUQ_1576
________________AACG____AATT
17._RUQ_1569
________________ACCG____AATT
18._RUQ_1642
________________AACG____AATT
19._RUQ_1642
________________AACG____AATT
20._RUQ_1564
________________ACCG____AATT
 85868788899091929394    
_Input profile
CTCCTTAACCCCTTTTAAGGX_XX_XX_XX_X
1._GC-01-034-2-11
CTCCTTAACCCCTTTTAAGGX_XX_XX_XX_X
2._GC-01-034-2-11
CTCCTTAACCCCTTTTAAGGX_XX_XX_XX_X
3._GC-01-034-2-11
CTCCTTAACCCCTTTTAAGGX_XX_XX_XX_X
4._GC-03-032-3-11
CTCCTTAACCCCTTTTAAGGX_XX_XX_XX_X
5._GC-03-032-3-11
CTCCTTAACCCCTTTTAAGGX_XX_XX_XX_X
6._EET_272_[ECU]
CTCC__AA__CCTTTT____X_XX_XX_XX_X
7._PA_150_[PER]
CTCC__AA__CCTTTT____X_XX_XX_XX_X
8._PA_150_[PER]
CTCC__AA__CCTTTT____X_XX_XX_XX_X
9._PA_150_[PER]
CTCC__AA__CCTTTT____X_XX_XX_XX_X
10._PA_150_[PER]
CTCC__AA__CCTTTT____X_XX_XX_XX_X
11._EET_272_[ECU]
CTCC__AA__CCTTTT____X_XX_XX_XX_X
12._RUQ_1436
______AACCCCTT______X_XX_XX_XX_X
13._GC-07-077-4-21
CTCCTTAACCCCTTTTAAGGX_XX_XX_XX_X
14._EQX_/O_[CHA]
CTCC__AA__CCTTTT____X_XX_XX_XX_X
15._RUQ_32
______AACCCCTT______X_XX_XX_XX_X
16._RUQ_1576
______AACCCCTT______X_XX_XX_XX_X
17._RUQ_1569
______AACCCCTT______X_XX_XX_XX_X
18._RUQ_1642
______AACCCCTT______X_XX_XX_XX_X
19._RUQ_1642
______AACCCCTT______X_XX_XX_XX_X
20._RUQ_1564
______AACCCCTT______X_XX_XX_XX_X

Input profile: PA_150_[PER] GC-01-034-2-11

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

1._PA_150_[PER] GC-01-034-2-11

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

2._PA_150_[PER] GC-01-034-2-11

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

3._PA_150_[PER] GC-01-034-2-11

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP4
 Mars, 2018

4._EET_272_[ECU] GC-03-032-3-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

5._EET_272_[ECU] GC-03-032-3-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

6._EET_272_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 8
 Dapeng Zhang, 2016

7._PA_150_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 7 > FP
 Dapeng Zhang, 2016

8._PA_150_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 10
 Dapeng Zhang, 2016

9._PA_150_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 3
 Dapeng Zhang, 2016

10._PA_150_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

11._EET_272_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 7
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

12._MOQ_6_/95 RUQ_1436

97.6 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

13._EQX_/O_[CHA] GC-07-077-4-21

96.2 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

14._EQX_/O_[CHA]

94.9 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7421 2
 Dapeng Zhang, 2016

15._PA_56_[PER] RUQ_32

92.9 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

16._PA_124_[PER] RUQ_1576

90.7 %
43 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

17._CRUZ_7_/14 RUQ_1569

90.5 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

18._PA_195_[PER] RUQ_1642

90.5 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

19._PA_195_[PER] RUQ_1642

90.5 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

20._PA_71_[PER] RUQ_1564

90.5 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240