SNP Profiles matching EET 272

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 Key

 1234567891011121314
_Input profile
CTGGGGCCTTACCTTTCCCCAAAGCCAG
1._GC-03-032-3-11
CTGGGGCCTTACCTTTCCCCAAAGCCAG
2._PA_150_[PER]
CTGGGGCCTTACCTTTCCCCAAAGCCAG
3._PA_150_[PER]
CTGGGGCCTTACCTTTCCCCAAAGCCAG
4._PA_150_[PER]
CTGGGGCCTTACCTTTCCCCAAAGCCAG
5._PA_150_[PER]
CTGGGGCCTTACCTTTCCCCAAAGCCAG
6._GC-01-034-2-11
CTGGGGCCTTACCTTTCCCCAAAGCCAG
7._GC-01-034-2-11
CTGGGGCCTTACCTTTCCCCAAAGCCAG
8._GC-01-034-2-11
CTGGGGCCTTACCTTTCCCCAAAGCCAG
9._GC-01-034-2-11
CTGGGGCCTTACCTTTCCCCAAAGCCAG
10._EET_272_[ECU]
CTGGGGCCTTACCTTTCCCCAAAGCCAG
11._GC-03-032-3-11
CTGGGGCCTTACCTTTCCCCAAAGCCAG
12._RUQ_1436
__GGGGCC______TT________CCAG
13._EQX_/O_[CHA]
CCGGGGCCTTACCCTTCCCCAAAGCC__
14._GC-07-077-4-21
CCGGGGCCTTACCCTTCCCCAAAGCC__
15._RUQ_1569
__AGCGCC______TT________CCAG
16._RUQ_32
__GGCGCT______TT________CCAG
17._RUQ_1564
__AGCGCC______TT________CCAG
 1516171819202122232425262728
_Input profile
CTAACCCTCCGGGGAGTTCCCGGTCCAC
1._GC-03-032-3-11
CTAACCCTCCGGGGAGTTCCCGGTCCAC
2._PA_150_[PER]
CTAACCCTCCGGGGAGTTCCCGGTCCAC
3._PA_150_[PER]
CTAACCCTCCGGGGAGTTCCCGGTCCAC
4._PA_150_[PER]
CTAACCCTCCGGGGAGTTCCCGGTCCAC
5._PA_150_[PER]
CTAACCCTCCGGGGAGTTCCCGGTCCAC
6._GC-01-034-2-11
CTAACCCTCCGGGGAGTTCCCGGTCCAC
7._GC-01-034-2-11
CTAACCCTCCGGGGAGTTCCCGGTCCAC
8._GC-01-034-2-11
CTAACCCTCCGGGGAGTTCCCGGTCCAC
9._GC-01-034-2-11
CTAACCCTCCGGGGAGTTCCCGGTCCAC
10._EET_272_[ECU]
CTAACCCTCCGGGGAGTTCCCGGTCCAC
11._GC-03-032-3-11
CTAACCCTCCGGGGAGTTCCCGGTCCAC
12._RUQ_1436
________CCGGGG__TTCCCGGTCCAC
13._EQX_/O_[CHA]
CTAACCCTCCGGGGAGTTCCCGGTCCAC
14._GC-07-077-4-21
CTAACCCTCCGGGGAGTTCCCGGTCCAC
15._RUQ_1569
________CCGGGG__TTCCCGGTCTAC
16._RUQ_32
________CCGGGG__TTCCCGGTCTAC
17._RUQ_1564
________CCGGGG__TTCCCGGTCTAC
 293031323334353637383940  
_Input profile
AAGGAACCAGCCAACCGGCCATGGX_XX_X
1._GC-03-032-3-11
AAGGAACCAGCCAACCGGCCATGGX_XX_X
2._PA_150_[PER]
AAGGAACCAGCCAACCGGCCATGGX_XX_X
3._PA_150_[PER]
AAGGAACCAGCCAACCGGCCATGGX_XX_X
4._PA_150_[PER]
AAGGAACCAGCCAACCGGCCATGGX_XX_X
5._PA_150_[PER]
AAGGAACCAGCCAACCGGCCATGGX_XX_X
6._GC-01-034-2-11
AAGGAACCAGCCAACCGGCCATGGX_XX_X
7._GC-01-034-2-11
AAGGAACCAGCCAACCGGCCATGGX_XX_X
8._GC-01-034-2-11
AAGGAACCAGCCAACCGGCCATGGX_XX_X
9._GC-01-034-2-11
AAGGAACCAGCCAACCGGCCATGGX_XX_X
10._EET_272_[ECU]
AAGGAACCAGCC__CCGGCCATGGX_XX_X
11._GC-03-032-3-11
AAGGAACCAGCC__CCGGCCATGGX_XX_X
12._RUQ_1436
AA__AACCAGCCACCCGGCC____X_XX_X
13._EQX_/O_[CHA]
AAGGAACCAGCCCCCCGGCCATGGX_XX_X
14._GC-07-077-4-21
AAGGAACCAGCCCCCCGGCCATGGX_XX_X
15._RUQ_1569
AA__AACCAGCCAACCGGAC____X_XX_X
16._RUQ_32
AA__AACCAGCCACCCGGCC____X_XX_X
17._RUQ_1564
AA__AACCAGCCAACCGGAC____X_XX_X

Input profile: EET_272_[ECU]

 
Mars Center for Cocoa Science, Brazil
Location: 3311 8
 Dapeng Zhang, 2016

1._EET_272_[ECU] GC-03-032-3-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

2._PA_150_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 7 > FP
 Dapeng Zhang, 2016

3._PA_150_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 10
 Dapeng Zhang, 2016

4._PA_150_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 3
 Dapeng Zhang, 2016

5._PA_150_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

6._PA_150_[PER] GC-01-034-2-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

7._PA_150_[PER] GC-01-034-2-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

8._PA_150_[PER] GC-01-034-2-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP4
 Mars, 2018

9._PA_150_[PER] GC-01-034-2-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

10._EET_272_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 7
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

11._EET_272_[ECU] GC-03-032-3-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

12._MOQ_6_/95 RUQ_1436

97.9 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

13._EQX_/O_[CHA]

94.9 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7421 2
 Dapeng Zhang, 2016

14._EQX_/O_[CHA] GC-07-077-4-21

94.9 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

15._CRUZ_7_/14 RUQ_1569

91.7 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

16._PA_56_[PER] RUQ_32

91.7 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

17._PA_71_[PER] RUQ_1564

91.7 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25