SNP Profiles matching POUND 7 /B

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAACCTTTTAATTTTCCCCAAGGCTAG
1._EET_272_[ECU]___
CCAACCTTTTAATTTTCCCCAAGGCTAG
2._EET_272_[ECU]___
CCAACCTTTTAATTTTCCCCAAGGCTAG
3._EET_272_[ECU]___
CCAACCTTTTAATTTTCCCCAAGGCTAG
4._EET_272_[ECU]___
CCAACCTTTTAATTTTCCCCAAGGCTAG
5._EET_272_[ECU]___
CCAACCTTTTAATTTTCCCCAAGGCTAG
6._EET_272_[ECU]___
CCAACCTTTTAATTTTCCCCAAGGCTAG
7._EET_272_[ECU]___
CCAACCTTTTAATTTTCCCCAAGGCTAG
8._EET_272_[ECU]___
CCAACCTTTTAATTTTCCCCAAGGCTAG
9._EET_272_[ECU]___
CCAACCTTTTAATTTTCCCCAAGGCTAG
10._EET_272_[ECU]___
CCAACCTTTTAATTTTCCCCAAGGCTAG
11._EET_272_[ECU]___
CCAACCTTTTAATTTTCCCCAAGGCTAG
12._EET_272_[ECU]___
CCAACCTTTTAATTTTCCCCAAGGCTAG
13._EET_272_[ECU]___
CCAACCTTTTAATTTTCCCCAAGGCTAG
14._EET_272_[ECU]___
CCAACCTTTTAATTTTCCCCAAGGCTAG
15._EET_272_[ECU]___
CCAACCTTTTAATTTTCCCCAAGGCTAG
16._POUND_7_/B___
CCAACCTTTTAATTTTCCCCAAGGCTAG
17._POUND_7_/B___
CCAACCTTTTAATTTTCCCCAAGGCTAG
18._POUND_7_/B___
CCAACCTTTTAATTTTCCCCAAGGCTAG
19._POUND_7_/B___
CCAACCTTTTAATTTTCCCCAAGGCTAG
20._POUND_7_/B___
CCAACCTTTTAATTTTCCCCAAGGCTAG
21._POUND_7_/B___
CCAACCTTTTAATTTTCCCCAAGGCTAG
22._POUND_7_/B___
CCAACCTTTTAATTTTCCCCAAGGCTAG
23._POUND_7_/B___
CCAACCTTTTAATTTTCCCCAAGGCTAG
24._POUND_7_/B___
CCAACCTTTTAATTTTCCCCAAGGCTAG
25._POUND_7_/B___
CCAACCTTTTAATTTTCCCCAAGGCTAG
26._POUND_7_/B___
CCAACCTTTTAATTTTCCCCAAGGCTAG
27._POUND_7_/B___
CCAACCTTTTAATTTTCCCCAAGGCTAG
28._POUND_7_/B___
CCAACCTTTTAATTTTCCCCAAGGCTAG
29._POUND_7_/B___
CCAACCTTTTAATTTTCCCCAAGGCTAG
30._POUND_7_/B___
CCAACCTTTTAATTTTCCCCAAGGCTAG
31._POUND_7_/B___
CCAACCTTTTAATTTTCCCCAAGGCTAG
32._PA_150_[PER]___
CCAACCTTTTAATTTTCCCCAAGGCTAG
33._POUND_7_/B___
CCAACCTTTTAATTTTCCCCAAGGCTAG
34._POUND_7_/B___
__AACCTT______TT________CTAG
35._POUND_7_/B___
CCAGCCTTTTAATTTTCCCCAAGGCTAG
36._EET_272_[ECU]___
__AACCTT______TT________CTAG
37._TRD_32___
__AACCTT______TT________CTAG
38._EET_272_[ECU]___
CTAA__TTTTAA__TT__CTAA__CTAG
39._LZ_8___
__AACCTT______TT________CCAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CTAAGGCTCTCCGGAACTAAGGGTCTCC
1._EET_272_[ECU]___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
2._EET_272_[ECU]___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
3._EET_272_[ECU]___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
4._EET_272_[ECU]___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
5._EET_272_[ECU]___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
6._EET_272_[ECU]___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
7._EET_272_[ECU]___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
8._EET_272_[ECU]___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
9._EET_272_[ECU]___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
10._EET_272_[ECU]___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
11._EET_272_[ECU]___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
12._EET_272_[ECU]___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
13._EET_272_[ECU]___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
14._EET_272_[ECU]___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
15._EET_272_[ECU]___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
16._POUND_7_/B___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
17._POUND_7_/B___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
18._POUND_7_/B___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
19._POUND_7_/B___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
20._POUND_7_/B___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
21._POUND_7_/B___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
22._POUND_7_/B___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
23._POUND_7_/B___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
24._POUND_7_/B___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
25._POUND_7_/B___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
26._POUND_7_/B___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
27._POUND_7_/B___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
28._POUND_7_/B___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
29._POUND_7_/B___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
30._POUND_7_/B___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
31._POUND_7_/B___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
32._PA_150_[PER]___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
33._POUND_7_/B___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
34._POUND_7_/B___
__________CCGG__CTAAGGGTCTCC
35._POUND_7_/B___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
36._EET_272_[ECU]___
________TTCCGG__CTAAGGGTCTCC
37._TRD_32___
________TTCCGG__CTAAGGGTCTCC
38._EET_272_[ECU]___
CTAAGGCTCT__GGAACTAA__GTCT__
39._LZ_8___
________TTCCGG__CTAAGGGTCCCC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AAGGAACTAACCAACTGGACTTGGX_XX_X
1._EET_272_[ECU]___
AAGGAACTAACCAACTGGACTTGGX_XX_X
2._EET_272_[ECU]___
AAGGAACTAACCAACTGGACTTGGX_XX_X
3._EET_272_[ECU]___
AAGGAACTAACCAACTGGACTTGGX_XX_X
4._EET_272_[ECU]___
AAGGAACTAACCAACTGGACTTGGX_XX_X
5._EET_272_[ECU]___
AAGGAACTAACCAACTGGACTTGGX_XX_X
6._EET_272_[ECU]___
AAGGAACTAACCAACTGGACTTGGX_XX_X
7._EET_272_[ECU]___
AAGGAACTAACCAACTGGACTTGGX_XX_X
8._EET_272_[ECU]___
AAGGAACTAACCAACTGGACTTGGX_XX_X
9._EET_272_[ECU]___
AAGGAACTAACCAACTGGACTTGGX_XX_X
10._EET_272_[ECU]___
AAGGAACTAACCAACTGGACTTGGX_XX_X
11._EET_272_[ECU]___
AAGGAACTAACCAACTGGACTTGGX_XX_X
12._EET_272_[ECU]___
AAGGAACTAACCAACTGGACTTGGX_XX_X
13._EET_272_[ECU]___
AAGGAACTAACCAACTGGACTTGGX_XX_X
14._EET_272_[ECU]___
AAGGAACTAACCAACTGGACTTGGX_XX_X
15._EET_272_[ECU]___
AAGGAACTAACCAACTGGACTTGGX_XX_X
16._POUND_7_/B___
AAGGAACTAACCAACTGGACTTGGX_XX_X
17._POUND_7_/B___
AAGGAACTAACCAACTGGACTTGGX_XX_X
18._POUND_7_/B___
AAGGAACTAACCAACTGGACTTGGX_XX_X
19._POUND_7_/B___
AAGGAACTAACCAACTGGACTTGGX_XX_X
20._POUND_7_/B___
AAGGAACTAACCAACTGGACTTGGX_XX_X
21._POUND_7_/B___
AAGGAACTAACCAACTGGACTTGGX_XX_X
22._POUND_7_/B___
AAGGAACTAACCAACTGGACTTGGX_XX_X
23._POUND_7_/B___
AAGGAACTAACCAACTGGACTTGGX_XX_X
24._POUND_7_/B___
AAGGAACTAACCAACTGGACTTGGX_XX_X
25._POUND_7_/B___
AAGGAACTAACCAACTGGACTTGGX_XX_X
26._POUND_7_/B___
AAGGAACTAACCAACTGGACTTGGX_XX_X
27._POUND_7_/B___
AAGGAACTAACCAACTGGACTTGGX_XX_X
28._POUND_7_/B___
AAGGAACTAACCAACTGGACTTGGX_XX_X
29._POUND_7_/B___
AAGGAACTAACCAACTGGACTTGGX_XX_X
30._POUND_7_/B___
AAGGAACTAACCAACTGGACTTGGX_XX_X
31._POUND_7_/B___
AAGGAACTAACCAACTGGACTTGGX_XX_X
32._PA_150_[PER]___
AAGGAACTAACCAACTGGACTTGGX_XX_X
33._POUND_7_/B___
AAGGAACTAACCAACTGGACTTGGX_XX_X
34._POUND_7_/B___
AA__AACTAACCAACTGGAC____X_XX_X
35._POUND_7_/B___
AAGGAACTAACCAACTGGACTTGGX_XX_X
36._EET_272_[ECU]___
AA__AACTAACCAACTGGAC____X_XX_X
37._TRD_32___
AA__AACTAACCAACTGGAC____X_XX_X
38._EET_272_[ECU]___
AAAG__CTAACCAACT__AC__GGX_XX_X
39._LZ_8___
AA__AACTAACCAACCGGAC____X_XX_X

Input profile: EET_272_[ECU]

 
Mars Center for Cocoa Science, Brazil
Location: 3311 9
 Dapeng Zhang, 2016

1._EET_272_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 3 > FP
 Dapeng Zhang, 2016

2._EET_272_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 2 > FP
 Dapeng Zhang, 2016

3._EET_272_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 1 > FP
 Dapeng Zhang, 2016

4._EET_272_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 16
 Dapeng Zhang, 2016

5._EET_272_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 13
 Dapeng Zhang, 2016

6._EET_272_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 10
 Dapeng Zhang, 2016

7._EET_272_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 5
 Dapeng Zhang, 2016

8._EET_272_[ECU] GC-03-032-3-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

9._EET_272_[ECU] GC-03-032-3-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

10._EET_272_[ECU] GC-03-032-3-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

11._EET_272_[ECU] GC-03-032-3-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

12._EET_272_[ECU] GC-03-032-3-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

13._EET_272_[ECU] GC-03-032-3-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

14._EET_272_[ECU] GC-03-032-3-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

15._EET_272_[ECU] GC-03-032-3-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

16._POUND_7_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 2
 Dapeng Zhang, 2016

17._POUND_7_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 3
 Dapeng Zhang, 2016

18._POUND_7_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 9
 Dapeng Zhang, 2016

19._POUND_7_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 13
 Dapeng Zhang, 2016

20._POUND_7_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 1 > FP
 Dapeng Zhang, 2016

21._POUND_7_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 10 > F
 Dapeng Zhang, 2016

22._POUND_7_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 11 > F
 Dapeng Zhang, 2016

23._POUND_7_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 4 > FP
 Dapeng Zhang, 2016

24._POUND_7_/B GC-01-114-6-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

25._POUND_7_/B GC-01-114-6-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

26._POUND_7_/B GC-01-114-6-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

27._POUND_7_/B GC-01-114-6-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

28._POUND_7_/B GC-01-114-6-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

29._POUND_7_/B GC-01-114-6-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

30._POUND_7_/B GC-01-114-6-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP4
 Mars, 2018

31._POUND_7_/B GC-01-114-6-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

32._PA_150_[PER]

identical
40 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P74 1009
 Dapeng Zhang, 2016

33._POUND_7_/B

identical
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F407 T3
 Dapeng Zhang, 2016

34._POUND_7_/B RUQ_24

identical
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

35._POUND_7_/B RUQ_24

98.8 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

36._EET_272_[ECU] RUQ_6

97.9 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

37._TRD_32 RUQ_1534

97.9 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

38._EET_272_[ECU]

95 %
30 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 3 X16 Y8
 Dapeng Zhang, 2016

39._LZ_8 RUQ_1231

91.7 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25