SNP Profiles matching EET 272 [ECU]

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 Key

 1234567891011121314
_Input profile
CTAATTTTAATTCTAACTAGCTAAGGCT
1._RUQ_24
__AATT____TT____CTAG________
2._RUQ_6
__AATT____TT____CTAG________
3._RUQ_1534
__AATT____TT____CTAG________
4._EET_272_[ECU]
CCAATTTTAATTCCAACTAGCTAAGGCT
5._EET_272_[ECU]
CCAATTTTAATTCCAACTAGCTAAGGCT
6._EET_272_[ECU]
CCAATTTTAATTCCAACTAGCTAAGGCT
7._EET_272_[ECU]
CCAATTTTAATTCCAACTAGCTAAGGCT
8._EET_272_[ECU]
CCAATTTTAATTCCAACTAGCTAAGGCT
9._EET_272_[ECU]
CCAATTTTAATTCCAACTAGCTAAGGCT
10._EET_272_[ECU]
CCAATTTTAATTCCAACTAGCTAAGGCT
11._EET_272_[ECU]
CCAATTTTAATTCCAACTAGCTAAGGCT
12._GC-03-032-3-11
CCAATTTTAATTCCAACTAGCTAAGGCT
13._GC-03-032-3-11
CCAATTTTAATTCCAACTAGCTAAGGCT
14._GC-03-032-3-11
CCAATTTTAATTCCAACTAGCTAAGGCT
15._GC-03-032-3-11
CCAATTTTAATTCCAACTAGCTAAGGCT
16._GC-03-032-3-11
CCAATTTTAATTCCAACTAGCTAAGGCT
17._GC-03-032-3-11
CCAATTTTAATTCCAACTAGCTAAGGCT
18._GC-03-032-3-11
CCAATTTTAATTCCAACTAGCTAAGGCT
19._GC-03-032-3-11
CCAATTTTAATTCCAACTAGCTAAGGCT
20._POUND_7_/B
CCAATTTTAATTCCAACTAGCTAAGGCT
21._POUND_7_/B
CCAATTTTAATTCCAACTAGCTAAGGCT
22._POUND_7_/B
CCAATTTTAATTCCAACTAGCTAAGGCT
23._POUND_7_/B
CCAATTTTAATTCCAACTAGCTAAGGCT
24._POUND_7_/B
CCAATTTTAATTCCAACTAGCTAAGGCT
25._POUND_7_/B
CCAATTTTAATTCCAACTAGCTAAGGCT
26._POUND_7_/B
CCAATTTTAATTCCAACTAGCTAAGGCT
27._POUND_7_/B
CCAATTTTAATTCCAACTAGCTAAGGCT
28._GC-01-114-6-11
CCAATTTTAATTCCAACTAGCTAAGGCT
29._GC-01-114-6-11
CCAATTTTAATTCCAACTAGCTAAGGCT
30._GC-01-114-6-11
CCAATTTTAATTCCAACTAGCTAAGGCT
31._GC-01-114-6-11
CCAATTTTAATTCCAACTAGCTAAGGCT
32._GC-01-114-6-11
CCAATTTTAATTCCAACTAGCTAAGGCT
33._GC-01-114-6-11
CCAATTTTAATTCCAACTAGCTAAGGCT
34._GC-01-114-6-11
CCAATTTTAATTCCAACTAGCTAAGGCT
35._GC-01-114-6-11
CCAATTTTAATTCCAACTAGCTAAGGCT
36._PA_150_[PER]
CCAATTTTAATTCCAACTAGCTAAGGCT
37._POUND_7_/B
CCAATTTTAATTCCAACTAGCTAAGGCT
38._RUQ_24
CCAGTTTTAATTCCAACTAGCTAAGGCT
 1516171819202122232425262728
_Input profile
CTGGAACTAAGTCTAAAGCTAACCAACT
1._RUQ_24
__GG__CTAAGTCTAA__CTAACCAACT
2._RUQ_6
TTGG__CTAAGTCTAA__CTAACCAACT
3._RUQ_1534
TTGG__CTAAGTCTAA__CTAACCAACT
4._EET_272_[ECU]
CTGGAACTAAGTCTAAGGCTAACCAACT
5._EET_272_[ECU]
CTGGAACTAAGTCTAAGGCTAACCAACT
6._EET_272_[ECU]
CTGGAACTAAGTCTAAGGCTAACCAACT
7._EET_272_[ECU]
CTGGAACTAAGTCTAAGGCTAACCAACT
8._EET_272_[ECU]
CTGGAACTAAGTCTAAGGCTAACCAACT
9._EET_272_[ECU]
CTGGAACTAAGTCTAAGGCTAACCAACT
10._EET_272_[ECU]
CTGGAACTAAGTCTAAGGCTAACCAACT
11._EET_272_[ECU]
CTGGAACTAAGTCTAAGGCTAACCAACT
12._GC-03-032-3-11
CTGGAACTAAGTCTAAGGCTAACCAACT
13._GC-03-032-3-11
CTGGAACTAAGTCTAAGGCTAACCAACT
14._GC-03-032-3-11
CTGGAACTAAGTCTAAGGCTAACCAACT
15._GC-03-032-3-11
CTGGAACTAAGTCTAAGGCTAACCAACT
16._GC-03-032-3-11
CTGGAACTAAGTCTAAGGCTAACCAACT
17._GC-03-032-3-11
CTGGAACTAAGTCTAAGGCTAACCAACT
18._GC-03-032-3-11
CTGGAACTAAGTCTAAGGCTAACCAACT
19._GC-03-032-3-11
CTGGAACTAAGTCTAAGGCTAACCAACT
20._POUND_7_/B
CTGGAACTAAGTCTAAGGCTAACCAACT
21._POUND_7_/B
CTGGAACTAAGTCTAAGGCTAACCAACT
22._POUND_7_/B
CTGGAACTAAGTCTAAGGCTAACCAACT
23._POUND_7_/B
CTGGAACTAAGTCTAAGGCTAACCAACT
24._POUND_7_/B
CTGGAACTAAGTCTAAGGCTAACCAACT
25._POUND_7_/B
CTGGAACTAAGTCTAAGGCTAACCAACT
26._POUND_7_/B
CTGGAACTAAGTCTAAGGCTAACCAACT
27._POUND_7_/B
CTGGAACTAAGTCTAAGGCTAACCAACT
28._GC-01-114-6-11
CTGGAACTAAGTCTAAGGCTAACCAACT
29._GC-01-114-6-11
CTGGAACTAAGTCTAAGGCTAACCAACT
30._GC-01-114-6-11
CTGGAACTAAGTCTAAGGCTAACCAACT
31._GC-01-114-6-11
CTGGAACTAAGTCTAAGGCTAACCAACT
32._GC-01-114-6-11
CTGGAACTAAGTCTAAGGCTAACCAACT
33._GC-01-114-6-11
CTGGAACTAAGTCTAAGGCTAACCAACT
34._GC-01-114-6-11
CTGGAACTAAGTCTAAGGCTAACCAACT
35._GC-01-114-6-11
CTGGAACTAAGTCTAAGGCTAACCAACT
36._PA_150_[PER]
CTGGAACTAAGTCTAAGGCTAACCAACT
37._POUND_7_/B
CTGGAACTAAGTCTAAGGCTAACCAACT
38._RUQ_24
CTGGAACTAAGTCTAAGGCTAACCAACT
 2930            
_Input profile
ACGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._RUQ_24
AC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._RUQ_6
AC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._RUQ_1534
AC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._EET_272_[ECU]
ACGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._EET_272_[ECU]
ACGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._EET_272_[ECU]
ACGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._EET_272_[ECU]
ACGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._EET_272_[ECU]
ACGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._EET_272_[ECU]
ACGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._EET_272_[ECU]
ACGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._EET_272_[ECU]
ACGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._GC-03-032-3-11
ACGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._GC-03-032-3-11
ACGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._GC-03-032-3-11
ACGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._GC-03-032-3-11
ACGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._GC-03-032-3-11
ACGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._GC-03-032-3-11
ACGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._GC-03-032-3-11
ACGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._GC-03-032-3-11
ACGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._POUND_7_/B
ACGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._POUND_7_/B
ACGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._POUND_7_/B
ACGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._POUND_7_/B
ACGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
24._POUND_7_/B
ACGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
25._POUND_7_/B
ACGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
26._POUND_7_/B
ACGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
27._POUND_7_/B
ACGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
28._GC-01-114-6-11
ACGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
29._GC-01-114-6-11
ACGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
30._GC-01-114-6-11
ACGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
31._GC-01-114-6-11
ACGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
32._GC-01-114-6-11
ACGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
33._GC-01-114-6-11
ACGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
34._GC-01-114-6-11
ACGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
35._GC-01-114-6-11
ACGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
36._PA_150_[PER]
ACGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
37._POUND_7_/B
ACGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
38._RUQ_24
ACGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: EET_272_[ECU]

 
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 3 X16 Y8
 Dapeng Zhang, 2016

1._POUND_7_/B RUQ_24

identical
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._EET_272_[ECU] RUQ_6

97.2 %
18 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._TRD_32 RUQ_1534

97.2 %
18 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

4._EET_272_[ECU]

95 %
30 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 3 > FP
 Dapeng Zhang, 2016

5._EET_272_[ECU]

95 %
30 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 2 > FP
 Dapeng Zhang, 2016

6._EET_272_[ECU]

95 %
30 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 1 > FP
 Dapeng Zhang, 2016

7._EET_272_[ECU]

95 %
30 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 16
 Dapeng Zhang, 2016

8._EET_272_[ECU]

95 %
30 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 13
 Dapeng Zhang, 2016

9._EET_272_[ECU]

95 %
30 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 10
 Dapeng Zhang, 2016

10._EET_272_[ECU]

95 %
30 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 9
 Dapeng Zhang, 2016

11._EET_272_[ECU]

95 %
30 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 5
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

12._EET_272_[ECU] GC-03-032-3-11

95 %
30 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

13._EET_272_[ECU] GC-03-032-3-11

95 %
30 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

14._EET_272_[ECU] GC-03-032-3-11

95 %
30 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

15._EET_272_[ECU] GC-03-032-3-11

95 %
30 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

16._EET_272_[ECU] GC-03-032-3-11

95 %
30 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

17._EET_272_[ECU] GC-03-032-3-11

95 %
30 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

18._EET_272_[ECU] GC-03-032-3-11

95 %
30 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

19._EET_272_[ECU] GC-03-032-3-11

95 %
30 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

20._POUND_7_/B

95 %
30 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

21._POUND_7_/B

95 %
30 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 3
 Dapeng Zhang, 2016

22._POUND_7_/B

95 %
30 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 9
 Dapeng Zhang, 2016

23._POUND_7_/B

95 %
30 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 13
 Dapeng Zhang, 2016

24._POUND_7_/B

95 %
30 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 1 > FP
 Dapeng Zhang, 2016

25._POUND_7_/B

95 %
30 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 10 > F
 Dapeng Zhang, 2016

26._POUND_7_/B

95 %
30 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 11 > F
 Dapeng Zhang, 2016

27._POUND_7_/B

95 %
30 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 4 > FP
 Dapeng Zhang, 2016

28._POUND_7_/B GC-01-114-6-11

95 %
30 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

29._POUND_7_/B GC-01-114-6-11

95 %
30 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

30._POUND_7_/B GC-01-114-6-11

95 %
30 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

31._POUND_7_/B GC-01-114-6-11

95 %
30 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

32._POUND_7_/B GC-01-114-6-11

95 %
30 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

33._POUND_7_/B GC-01-114-6-11

95 %
30 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

34._POUND_7_/B GC-01-114-6-11

95 %
30 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP4
 Mars, 2018

35._POUND_7_/B GC-01-114-6-11

95 %
30 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

36._PA_150_[PER]

95 %
30 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P74 1009
 Dapeng Zhang, 2016

37._POUND_7_/B

95 %
30 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F407 T3
 Dapeng Zhang, 2016

38._POUND_7_/B RUQ_24

93.3 %
30 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1442 4TcSNP1414 5TcSNP1350
6TcSNP1253 7TcSNP1144 8TcSNP1075 9TcSNP1060 10TcSNP998
11TcSNP994 12TcSNP953 13TcSNP929 14TcSNP917 15TcSNP891
16TcSNP723 17TcSNP645 18TcSNP619 19TcSNP591 20TcSNP560
21TcSNP534 22TcSNP469 23TcSNP429 24TcSNP242 25TcSNP230
26TcSNP226 27TcSNP193 28TcSNP151 29TcSNP144 30TcSNP25