SNP Profiles matching CSUL 7

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 Key

 1234567891011121314
_Input profile
CCAACCCTCCACTTGGCTCCAAGGCCAA
1._C_SUL_7
CCAACCCTCCACTTGGCTCCAAGGCCAA
2._C_SUL_7
CCAACCCTCCACTTGGCTCCAAGGCCAA
3._C_SUL_7
CCAACCCTCCACTTGGCTCCAAGGCCAA
4._NA
CCAACCCTCCACTTGGCTCCAAGGCCAA
5._NA
CCAACCCTCCACTTGGCTCCAAGGCCAA
6._NA
CCAACCCTCCACTTGGCTCCAAGGCCAA
7._NA
CCAACCCTCCACTTGGCTCCAAGGCCAA
8._C_SUL_7
CCAACCCTCCACTTGGCTCCAAGGCCAA
9._NA
CCAACCCTCCACTTGGCTCCAAGGCCAA
10._C_SUL_7
CCAACCCTCCACTTGGCTCCAAGGCCAA
 1516171819202122232425262728
_Input profile
CCATGGCTTTCGGTAACCCCCCGGCCAC
1._C_SUL_7
CCATGGCTTTCGGTAACCCCCCGGCCAC
2._C_SUL_7
CCATGGCTTTCGGTAACCCCCCGGCCAC
3._C_SUL_7
CCATGGCTTTCGGTAACCCCCCGGCCAC
4._NA
CCATGGCTTTCGGTAACCCCCCGGCCAC
5._NA
CCATGGCTTTCGGTAACCCCCCGGCCAC
6._NA
CCATGGCTTTCGGTAACCCCCCGGCCAC
7._NA
CCATGGCTTTCGGTAACCCCCCGGCCAC
8._C_SUL_7
_ATGG_TTCGGTAACCCCCCGGCCAC
9._NA
_ATGG_TTCGGTAACCCCCCGGCCAC
10._C_SUL_7
CCATGGCTTTCGGTAGCCCCCCGGCCAC
 293031323334353637383940  
_Input profile
GGGGAACTAACGCCTTGGACAAGGX_XX_X
1._C_SUL_7
GGGGAACTAACGCCTTGGACAAGGX_XX_X
2._C_SUL_7
GGGGAACTAACGCCTTGGACAAGGX_XX_X
3._C_SUL_7
GGGGAACTAACGCCTTGGACAAGGX_XX_X
4._NA
GGGGAACTAACGCCTTGGACAAGGX_XX_X
5._NA
GGGGAACTAACGCCTTGGACAAGGX_XX_X
6._NA
GGGGAACTAACGCCTTGGACAAGGX_XX_X
7._NA
GGGGAACTAACGCCTTGGACAAGGX_XX_X
8._C_SUL_7
GGGGAACTAACGCCTTGGACAAGGX_XX_X
9._NA
GGGGAACTAACGCCTTGGACAAGGX_XX_X
10._C_SUL_7
GGGGAACTAACGCCTTGGACAAGGX_XX_X

Input profile: C_SUL_7

 
Mars Center for Cocoa Science, Brazil
Location: 8129 7
 Dapeng Zhang, 2016

1._C_SUL_7

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8129 6
 Dapeng Zhang, 2016

2._C_SUL_7

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8129 5
 Dapeng Zhang, 2016

3._C_SUL_7

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8129 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

4._C_SUL_7 NA

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

5._C_SUL_7 NA

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

6._C_SUL_7 NA

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

7._C_SUL_7 NA

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

8._C_SUL_7

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8129 3
 Dapeng Zhang, 2016

9._C_SUL_7 NA

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

10._C_SUL_7

98.8 %
40 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P95 583
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25