SNP Profiles matching CRU 101

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 Key

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_Input profile
AGCGCTAACTTTCCATAGAGTTAAGGCT
1._RUQ_1627
AGCGCT__TT___AG____
2._CRU_101
AGCGCTAACTTTCCATAGAGTTAAGGCT
3._CRU_101
AGCGCTAACTTTCCATAGAGTTAAGGCT
4._CRU_101
AGCGCTAACTTTCCATAGAGTTAAGGCT
5._CRU_101
AGCGCTAACTTTCCATAGAGTTAAGGCT
6._CRU_101
AGCGCTAACTTTCCATAGAGTTAAGGCT
7._GC-05-164-4-17
AGCGCTAACTTTCCATAGAGTTAAGGCT
8._PA_121_[PER]
AGCGCTAACTTTCCATAGAGTTAAGGCT
9._GC-05-011-1-11
AGCGCTAACTTTCCATAGAGTTAAGGCT
 1516171819202122232425262728
_Input profile
CCGGGGAGTTCCCCGTTTCCAGAGAACC
1._RUQ_1627
CCGGGG_TTCCCCGTTTCCAG_AACC
2._CRU_101
CCGGGGAATTCCCCGTTTCCAGAGAACC
3._CRU_101
CCGGGGAATTCCCCGTTTCCAGAGAACC
4._CRU_101
CCGGGGAATTCCCCGTTTCCAGAGAACC
5._CRU_101
CCGGGGAATTCCCCGTTTCCAGAGAACC
6._CRU_101
CCGGGGAATTCCCCGTTTCCAGAGAACC
7._GC-05-164-4-17
CCGGGGAATTCCCCGTTTCCAGAGAACC
8._PA_121_[PER]
CCGGGGAATTCCCCGTTTCCAGAGAACC
9._GC-05-011-1-11
CCGGGGAATTCCCCGTTTCCAGAGAACC
 29303132333435       
_Input profile
AAAATTTTCCTTCGX_XX_XX_XX_XX_XX_XX_X
1._RUQ_1627
AAAATTTTCC__X_XX_XX_XX_XX_XX_XX_X
2._CRU_101
AAAATTTTCCTTCGX_XX_XX_XX_XX_XX_XX_X
3._CRU_101
AAAATTTTCCTTCGX_XX_XX_XX_XX_XX_XX_X
4._CRU_101
AAAATTTTCCTTCGX_XX_XX_XX_XX_XX_XX_X
5._CRU_101
AAAATTTTCCTTCGX_XX_XX_XX_XX_XX_XX_X
6._CRU_101
AAAATTTTCCTTCGX_XX_XX_XX_XX_XX_XX_X
7._GC-05-164-4-17
AAAATTTTCCTTCGX_XX_XX_XX_XX_XX_XX_X
8._PA_121_[PER]
AAAATTTTCCTTCGX_XX_XX_XX_XX_XX_XX_X
9._GC-05-011-1-11
AAAATTTTCCTTCGX_XX_XX_XX_XX_XX_XX_X

Input profile: CRU_101

 
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D91
 Dapeng Zhang, 2016

1._CRU_101 RUQ_1627

identical
22 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._CRU_101

98.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5417 4 > FP
 Dapeng Zhang, 2016

3._CRU_101

98.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5417 3 > FP
 Dapeng Zhang, 2016

4._CRU_101

98.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5417 2 > FP
 Dapeng Zhang, 2016

5._CRU_101

98.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5417 1 > FP
 Dapeng Zhang, 2016

6._CRU_101

98.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5417 5
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

7._CRU_101 GC-05-164-4-17

98.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

8._PA_121_[PER]

98.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5111 4
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

9._PA_121_[PER] GC-05-011-1-11

98.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1484 2TcSNP1458 3TcSNP1442 4TcSNP1350 5TcSNP1270
6TcSNP1253 7TcSNP1165 8TcSNP1075 9TcSNP1062 10TcSNP998
11TcSNP994 12TcSNP953 13TcSNP929 14TcSNP917 15TcSNP891
16TcSNP872 17TcSNP723 18TcSNP645 19TcSNP619 20TcSNP591
21TcSNP577 22TcSNP560 23TcSNP534 24TcSNP529 25TcSNP469
26TcSNP429 27TcSNP372 28TcSNP242 29TcSNP230 30TcSNP193
31TcSNP151 32TcSNP150 33TcSNP144 34TcSNP32 35TcSNP25