SNP Profiles matching B 12 /1 [POU]

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 Key

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_Input profile
CCGGCGCTTTCCGTTTCCTTAGCCAGCT
1._B_12_/1_[POU]
CCGGCGCTTTCCGTTTCCTTAGCCAGCT
2._B_12_/1_[POU]
CCGGCGCTTTCCGTTTCCTTAGCCAGCT
3._B_12_/1_[POU]
CCGGCGCTTTCCGTTTCCTTAGCCAGCT
4._B_12_/1_[POU]
CCGGCGCTTTCCGTTTCCTTAGCCAGCT
5._GC-05-093-2-44
CCGGCGCTTTCCGTTTCCTTAGCCAGCT
6._GC-05-093-2-44
CCGGCGCTTTCCGTTTCCTTAGCCAGCT
7._GC-05-093-2-44
CCGGCGCTTTCCGTTTCCTTAGCCAGCT
8._GC-05-093-2-44
CCGGCGCTTTCCGTTTCCTTAGCCAGCT
9._GC-05-093-2-44
CCGGCGCTTTCCGTTTCCTTAGCCAGCT
10._PA_121_[PER]
CCGGCGCTTTCCGTTTCCTTAGCCAGCT
11._GC-05-011-1-11
CCGGCGCTTTCCGTTTCCTTAGCCAGCT
12._B_12_/1_[POU]
CCGGCGCTTTCCGTTTCCTTAGCCAGCT
13._RUQ_1541
_GGCGCT__GT____CCAG_
14._RUQ_1541
CCGGCGCTTTCCGTTTCCTTAGCCAGCT
 1516171819202122232425262728
_Input profile
AAGGCTTTGGGTAACCCCGGGTCTCCAA
1._B_12_/1_[POU]
AAGGCTTTGGGTAACCCCGGGTCTCCAA
2._B_12_/1_[POU]
AAGGCTTTGGGTAACCCCGGGTCTCCAA
3._B_12_/1_[POU]
AAGGCTTTGGGTAACCCCGGGTCTCCAA
4._B_12_/1_[POU]
AAGGCTTTGGGTAACCCCGGGTCTCCAA
5._GC-05-093-2-44
AAGGCTTTGGGTAACCCCGGGTCTCCAA
6._GC-05-093-2-44
AAGGCTTTGGGTAACCCCGGGTCTCCAA
7._GC-05-093-2-44
AAGGCTTTGGGTAACCCCGGGTCTCCAA
8._GC-05-093-2-44
AAGGCTTTGGGTAACCCCGGGTCTCCAA
9._GC-05-093-2-44
AAGGCTTTGGGTAACCCCGGGTCTCCAA
10._PA_121_[PER]
AAGGCTTTGGGTAACCCCGGGTCTCCAA
11._GC-05-011-1-11
AAGGCTTTGGGTAACCCCGGGTCTCCAA
12._B_12_/1_[POU]
AAGGCTTTGGGTAACCCCGGGTCTCCAA
13._RUQ_1541
___TTGGGT_CCCCGGGTCTCCAA
14._RUQ_1541
AAGGCTCTGGGTAACCCCGGGTCTCCAA
 29303132333435363738    
_Input profile
AGTTCCAACCAAGTCCAAGGX_XX_XX_XX_X
1._B_12_/1_[POU]
AGTTCCAACCAAGTCCAAGGX_XX_XX_XX_X
2._B_12_/1_[POU]
AGTTCCAACCAAGTCCAAGGX_XX_XX_XX_X
3._B_12_/1_[POU]
AGTTCCAACCAAGTCCAAGGX_XX_XX_XX_X
4._B_12_/1_[POU]
AGTTCCAACCAAGTCCAAGGX_XX_XX_XX_X
5._GC-05-093-2-44
AGTTCCAACCAAGTCCAAGGX_XX_XX_XX_X
6._GC-05-093-2-44
AGTTCCAACCAAGTCCAAGGX_XX_XX_XX_X
7._GC-05-093-2-44
AGTTCCAACCAAGTCCAAGGX_XX_XX_XX_X
8._GC-05-093-2-44
AGTTCCAACCAAGTCCAAGGX_XX_XX_XX_X
9._GC-05-093-2-44
AGTTCCAACCAAGTCCAAGGX_XX_XX_XX_X
10._PA_121_[PER]
AGTTCCAACCAAGTCCAAGGX_XX_XX_XX_X
11._GC-05-011-1-11
AGTTCCAACCAAGTCCAAGGX_XX_XX_XX_X
12._B_12_/1_[POU]
AGTTCCAACCAAGTCCAAGGX_XX_XX_XX_X
13._RUQ_1541
_TTCCAACCAAGTCC__X_XX_XX_XX_X
14._RUQ_1541
AGTTCCAACCAAGTCCAAGGX_XX_XX_XX_X

Input profile: B_12_/1_[POU]

 
Mars Center for Cocoa Science, Brazil
Location: 5244 3
 Dapeng Zhang, 2016

1._B_12_/1_[POU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5244 1 > FP
 Dapeng Zhang, 2016

2._B_12_/1_[POU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5244 5
 Dapeng Zhang, 2016

3._B_12_/1_[POU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5244 4
 Dapeng Zhang, 2016

4._B_12_/1_[POU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5244 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

5._B_12_/1_[POU] GC-05-093-2-44

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

6._B_12_/1_[POU] GC-05-093-2-44

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

7._B_12_/1_[POU] GC-05-093-2-44

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

8._B_12_/1_[POU] GC-05-093-2-44

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

9._B_12_/1_[POU] GC-05-093-2-44

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

10._PA_121_[PER]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5111 2 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

11._PA_121_[PER] GC-05-011-1-11

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP4
 Mars, 2018

12._B_12_/1_[POU]

identical
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F461 T10
 Dapeng Zhang, 2016

13._B_12_/1_[POU] RUQ_1541

identical
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

14._B_12_/1_[POU] RUQ_1541

98.7 %
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP150
36TcSNP144 37TcSNP32 38TcSNP25