SNP Profiles matching B 12 /1 [POU]

 Show/Hide Profiles

 Key

 1234567891011121314
_Input profile
CCGGCGCTTTCCCCGTTTCCTTAGCCAG
1._B_12_/1_[POU]
CCGGCGCTTTCCCCGTTTCCTTAGCCAG
2._GC-05-093-2-44
CCGGCGCTTTCCCCGTTTCCTTAGCCAG
3._B_12_/1_[POU]
CCGGCGCTTT_CCGTTTCCTTAGCCAG
4._B_12_/1_[POU]
CCGGCGCTTT_CCGTTTCCTTAGCCAG
5._B_12_/1_[POU]
CCGGCGCTTT_CCGTTTCCTTAGCCAG
6._GC-05-093-2-44
CCGGCGCTTT_CCGTTTCCTTAGCCAG
7._GC-05-093-2-44
CCGGCGCTTT_CCGTTTCCTTAGCCAG
8._GC-05-093-2-44
CCGGCGCTTT_CCGTTTCCTTAGCCAG
9._PA_121_[PER]
CCGGCGCTTT_CCGTTTCCTTAGCCAG
10._GC-05-011-1-11
CCGGCGCTTT_CCGTTTCCTTAGCCAG
11._B_12_/1_[POU]
CCGGCGCTTT_CCGTTTCCTTAGCCAG
12._GC-05-093-2-44
CCGGCGCTTT_CCGTTTCCTTAGCCAG
13._RUQ_1541
_GGCGCT___GT____CCAG
14._RUQ_1541
CCGGCGCTTTCCCCGTTTCCTTAGCCAG
 1516171819202122232425262728
_Input profile
CTAAGGCTTTGGGTAACCCCGGGTCTCC
1._B_12_/1_[POU]
CTAAGGCTTTGGGTAACCCCGGGTCTCC
2._GC-05-093-2-44
CTAAGGCTTTGGGTAACCCCGGGTCTCC
3._B_12_/1_[POU]
CTAAGGCTTTGGGTAACCCCGGGTCTCC
4._B_12_/1_[POU]
CTAAGGCTTTGGGTAACCCCGGGTCTCC
5._B_12_/1_[POU]
CTAAGGCTTTGGGTAACCCCGGGTCTCC
6._GC-05-093-2-44
CTAAGGCTTTGGGTAACCCCGGGTCTCC
7._GC-05-093-2-44
CTAAGGCTTTGGGTAACCCCGGGTCTCC
8._GC-05-093-2-44
CTAAGGCTTTGGGTAACCCCGGGTCTCC
9._PA_121_[PER]
CTAAGGCTTTGGGTAACCCCGGGTCTCC
10._GC-05-011-1-11
CTAAGGCTTTGGGTAACCCCGGGTCTCC
11._B_12_/1_[POU]
CTAAGGCTTTGGGTAACCCCGGGTCTCC
12._GC-05-093-2-44
CTAAGGCTTTGGGTAACCCCGGGTCTCC
13._RUQ_1541
____TTGGGT_CCCCGGGTCTCC
14._RUQ_1541
CTAAGGCTCTGGGTAACCCCGGGTCTCC
 293031323334353637383940  
_Input profile
AAAGTTCCAACCAACTGTCCAAGGX_XX_X
1._B_12_/1_[POU]
AAAGTTCCAACCAACTGTCCAAGGX_XX_X
2._GC-05-093-2-44
AAAGTTCCAACCAACTGTCCAAGGX_XX_X
3._B_12_/1_[POU]
AAAGTTCCAACCAACTGTCCAAGGX_XX_X
4._B_12_/1_[POU]
AAAGTTCCAACCAACTGTCCAAGGX_XX_X
5._B_12_/1_[POU]
AAAGTTCCAACCAACTGTCCAAGGX_XX_X
6._GC-05-093-2-44
AAAGTTCCAACCAACTGTCCAAGGX_XX_X
7._GC-05-093-2-44
AAAGTTCCAACCAACTGTCCAAGGX_XX_X
8._GC-05-093-2-44
AAAGTTCCAACCAACTGTCCAAGGX_XX_X
9._PA_121_[PER]
AAAGTTCCAACCAACTGTCCAAGGX_XX_X
10._GC-05-011-1-11
AAAGTTCCAACCAACTGTCCAAGGX_XX_X
11._B_12_/1_[POU]
AAAGTTCCAACCAA_GTCCAAGGX_XX_X
12._GC-05-093-2-44
AAAGTTCCAACCAA_GTCCAAGGX_XX_X
13._RUQ_1541
AA_TTCCAACCAACTGTCC__X_XX_X
14._RUQ_1541
AAAGTTCCAACCAACTGTCCAAGGX_XX_X

Input profile: B_12_/1_[POU]

 
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F461 T10
 Dapeng Zhang, 2016

1._B_12_/1_[POU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5244 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

2._B_12_/1_[POU] GC-05-093-2-44

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

3._B_12_/1_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5244 1 > FP
 Dapeng Zhang, 2016

4._B_12_/1_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5244 5
 Dapeng Zhang, 2016

5._B_12_/1_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5244 4
 Dapeng Zhang, 2016

6._B_12_/1_[POU] GC-05-093-2-44

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

7._B_12_/1_[POU] GC-05-093-2-44

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

8._B_12_/1_[POU] GC-05-093-2-44

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

9._PA_121_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5111 2 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

10._PA_121_[PER] GC-05-011-1-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP4
 Mars, 2018

11._B_12_/1_[POU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5244 3
 Dapeng Zhang, 2016

12._B_12_/1_[POU] GC-05-093-2-44

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

13._B_12_/1_[POU] RUQ_1541

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

14._B_12_/1_[POU] RUQ_1541

98.8 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25