SNP Profiles matching AMAZ 3 /2

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAACCTTTTAATTTTCTCCAAGGCCAA
1._AMAZ_3_/2
CCAACCTTTTAATTTTCTCCAAGGCCAA
2._AMAZ_3_/2
CCAACCTTTTAATTTTCTCCAAGGCCAA
3._AMAZ_3_/2
CCAACCTTTTAATTTTCTCCAAGGCCAA
4._AMAZ_3_/2
CCAACCTTTTAATTTTCTCCAAGGCCAA
5._AMAZ_3_/2
CCAACCTTTTAATTTTCTCCAAGGCCAA
6._GC-03-022-2-11
CCAACCTTTTAATTTTCTCCAAGGCCAA
7._GC-03-022-2-11
CCAACCTTTTAATTTTCTCCAAGGCCAA
8._GC-03-022-2-11
CCAACCTTTTAATTTTCTCCAAGGCCAA
9._GC-03-022-2-11
CCAACCTTTTAATTTTCTCCAAGGCCAA
10._GC-03-022-2-11
CCAACCTTTTAATTTTCTCCAAGGCCAA
11._GC-03-022-2-11
CCAACCTTTTAATTTTCTCCAAGGCCAA
12._AMAZ_3_/2
CCAACCTTTTAATTTTCTCCAAGGCCAA
13._AMAZ_3_/2
CC__CCTTTTAATTTTCTCCAAGGCCAA
14._AMAZ_3_/2
CCAACCTT__AATTTTCTCCAAGGCCAA
15._AMAZ_3_/2
CCAACCTTTT__TTTTCTCCAAGGCCAA
16._AMAZ_3_/2
CCAACCTTTTAATTTTCTCCAAGGCCAA
17._GC-03-022-2-11
CCAACCTTTTAATTTTCTCCAAGGCCAA
18._GC-03-022-2-11
CCAACCTTTT__TTTTCTCCAAGGCCAA
19._GC-03-022-2-11
CCAACCTT__AATTTTCTCCAAGGCCAA
20._GC-03-022-2-11
CC__CCTTTTAATTTTCTCCAAGGCCAA
21._RUQ_91
CCAGCCTTTTAATTTTCTCCAAGGCTAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CTATGGCTCCCGGTAACCAAGGCCCCAA
1._AMAZ_3_/2
CTATGGCTCCCGGTAACCAAGGCCCCAA
2._AMAZ_3_/2
CTATGGCTCCCGGTAACCAAGGCCCCAA
3._AMAZ_3_/2
CTATGGCTCCCGGTAACCAAGGCCCCAA
4._AMAZ_3_/2
CTATGGCTCCCGGTAACCAAGGCCCCAA
5._AMAZ_3_/2
CTATGGCTCCCGGTAACCAAGGCCCCAA
6._GC-03-022-2-11
CTATGGCTCCCGGTAACCAAGGCCCCAA
7._GC-03-022-2-11
CTATGGCTCCCGGTAACCAAGGCCCCAA
8._GC-03-022-2-11
CTATGGCTCCCGGTAACCAAGGCCCCAA
9._GC-03-022-2-11
CTATGGCTCCCGGTAACCAAGGCCCCAA
10._GC-03-022-2-11
CTATGGCTCCCGGTAACCAAGGCCCCAA
11._GC-03-022-2-11
CTATGGCTCCCGGTAACCAAGGCCCCAA
12._AMAZ_3_/2
CTATGGCTCCCGGTAACCAAGGCCCCAA
13._AMAZ_3_/2
CTATGGCTCCCGGTAACCAAGGCCCCAA
14._AMAZ_3_/2
CTATGGCTCCCGGTAACCAAGGCCCCAA
15._AMAZ_3_/2
CTATGGCTCCCGGTAACCAAGGCCCCAA
16._AMAZ_3_/2
CTATGGCTCCCGGTAACCAAGGCCCCAA
17._GC-03-022-2-11
CTATGGCTCCCGGTAACCAAGGCCCCAA
18._GC-03-022-2-11
CTATGGCTCCCGGTAACCAAGGCCCCAA
19._GC-03-022-2-11
CTATGGCTCCCGGTAACCAAGGCCCCAA
20._GC-03-022-2-11
CTATGGCTCCCGGTAACCAAGGCCCCAA
21._RUQ_91
CTATGGCTCCCGGTAACCAAGGCCCCAA
 29 30 31 32 33 34 35 36 37 38 39    
_Input profile
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
1._AMAZ_3_/2
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
2._AMAZ_3_/2
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
3._AMAZ_3_/2
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
4._AMAZ_3_/2
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
5._AMAZ_3_/2
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
6._GC-03-022-2-11
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
7._GC-03-022-2-11
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
8._GC-03-022-2-11
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
9._GC-03-022-2-11
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
10._GC-03-022-2-11
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
11._GC-03-022-2-11
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
12._AMAZ_3_/2
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
13._AMAZ_3_/2
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
14._AMAZ_3_/2
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
15._AMAZ_3_/2
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
16._AMAZ_3_/2
GGATTTAAGGAA__GTAAATGGX_XX_XX_X
17._GC-03-022-2-11
GGATTTAAGGAA__GTAAATGGX_XX_XX_X
18._GC-03-022-2-11
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
19._GC-03-022-2-11
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
20._GC-03-022-2-11
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
21._RUQ_91
GGATTTAAGGAACCGTAAATGGX_XX_XX_X

Input profile: AMAZ_3_/2

 
Mars Center for Cocoa Science, Brazil
Location: 3211 12
 Dapeng Zhang, 2016

1._AMAZ_3_/2

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 5 > FP
 Dapeng Zhang, 2016

2._AMAZ_3_/2

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 14 > F
 Dapeng Zhang, 2016

3._AMAZ_3_/2

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 1 > FP
 Dapeng Zhang, 2016

4._AMAZ_3_/2

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 15
 Dapeng Zhang, 2016

5._AMAZ_3_/2

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 13
 Dapeng Zhang, 2016

6._AMAZ_3_/2 GC-03-022-2-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP4
 Mars, 2018

7._AMAZ_3_/2 GC-03-022-2-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

8._AMAZ_3_/2 GC-03-022-2-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

9._AMAZ_3_/2 GC-03-022-2-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

10._AMAZ_3_/2 GC-03-022-2-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP2
 Mars, 2018

11._AMAZ_3_/2 GC-03-022-2-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

12._AMAZ_3_/2

identical
39 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P97 225
 Dapeng Zhang, 2016

13._AMAZ_3_/2

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 16
 Dapeng Zhang, 2016

14._AMAZ_3_/2

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 9
 Dapeng Zhang, 2016

15._AMAZ_3_/2

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 8
 Dapeng Zhang, 2016

16._AMAZ_3_/2

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 7
 Dapeng Zhang, 2016

17._AMAZ_3_/2 GC-03-022-2-11

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

18._AMAZ_3_/2 GC-03-022-2-11

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

19._AMAZ_3_/2 GC-03-022-2-11

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

20._AMAZ_3_/2 GC-03-022-2-11

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

21._AMAZ_3_/2 RUQ_91

97.4 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25