SNP Profiles matching ICS 1

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 Key

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_Input profile
GGATAAGTCCAACGAGCTATGGAGCCCT
1._RUQ_847
GGATAAGTCCAACGAGCTATGGAGCCTT
2._ICS_1
GGATAAGTCCAACGAGCTATGGAGCCTT
3._ICS_1
GGATAAGTCCAACGAGCTATGGAGCCTT
4._ICS_1
GGATAAGTCCAACGAGCTATGGAGCCTT
5._ICS_1
GGATAAGTCCAACGAGCTATGGAGCCTT
6._ICS_1
GGATAAGTCCAACGAGCTATGGAGCCTT
7._NA
GGATAAGTCCAACGAGCTATGGAGCCTT
8._NA
GGATAAGTCCAACGAGCTATGGAGCCTT
9._NA
GGATAAGTCCAACGAGCTATGGAGCCTT
10._NA
GGATAAGTCCAACGAGCTATGGAGCCTT
11._NA
GGATAAGTCCAACGAGCTATGGAGCCTT
12._PA_70_[PER]
GGATAAGTCCAACGAGCTATGGAGCCTT
13._GC-04-053-3-17
GGATAAGTCCAACGAGCTATGGAGCCTT
14._ICS_1
GGATAAGTCCAACGAGCTATGGAGCCTT
15._NA
GGATAAGTCCAACGAGCTATGGAGCCTT
16._ICS_1
GGATAAGTCCAACGAGCTATGG__CCTT
17._MARPER_45
__AT__GT______AGCT__GGAGCCTT
18._MARPER_34
__AA__GT______AGTT__GGAGCCCT
19._MARPER_55
__AT__GG______AACC__GGAGCCCT
20._RUQ_847
____AAGTCCAACGAGCTAT__AGCCTT
21._RUQ_817
____AAGTCCAACGAGCTAT__AGCCTT
 1516171819202122232425262728
_Input profile
TTCCACCTGGGTCGCCTTGGAATTAGTT
1._RUQ_847
TTCCACTTGGGTCGCCTTGGAATTAGTT
2._ICS_1
TTCCACTTGGGTCGCCTTGGAATTAGTT
3._ICS_1
TTCCACTTGGGTCGCCTTGGAATTAGTT
4._ICS_1
TTCCACTTGGGTCGCCTTGGAATTAGTT
5._ICS_1
TTCCACTTGGGTCGCCTTGGAATTAGTT
6._ICS_1
TTCCACTTGGGTCGCCTTGGAATTAGTT
7._NA
TTCCACTTGGGTCGCCTTGGAATTAGTT
8._NA
TTCCACTTGGGTCGCCTTGGAATTAGTT
9._NA
TTCCACTTGGGTCGCCTTGGAATTAGTT
10._NA
TTCCACTTGGGTCGCCTTGGAATTAGTT
11._NA
TTCCACTTGGGTCGCCTTGGAATTAGTT
12._PA_70_[PER]
TTCCACTTGGGTCGCCTTGGAATTAGTT
13._GC-04-053-3-17
TTCCACTTGGGTCGCCTTGGAATTAGTT
14._ICS_1
TT__ACTTGGGTCGCCTTGGAATTAGTT
15._NA
TT__ACTTGGGTCGCCTTGGAATTAGTT
16._ICS_1
TTCCACTTGGGT__CCTTGGAATTAGTT
17._MARPER_45
__CC__TTGGGT__CC__GGAATTAG__
18._MARPER_34
__CC__CTGGGT__CC__GGAATTAG__
19._MARPER_55
__CC__CTGGGT__CC__GGAATTAG__
20._RUQ_847
TTCCAATT__GTCGCC________AGTT
21._RUQ_817
TTCCAATT__GTCGCC________AGTT
 293031323334353637383940  
_Input profile
AAAACTCTTTCCAATTCTGGAGTTX_XX_X
1._RUQ_847
AAAATTCTTTCCAATTCTGGAGTTX_XX_X
2._ICS_1
AAAATTCTTTCCAATTCTGGAATTX_XX_X
3._ICS_1
AAAATTCTTTCCAATTCTGGAATTX_XX_X
4._ICS_1
AAAATTCTTTCCAATTCTGGAATTX_XX_X
5._ICS_1
AAAATTCTTTCCAATTCTGGAATTX_XX_X
6._ICS_1
AAAATTCTTTCCAATTCTGGAATTX_XX_X
7._NA
AAAATTCTTTCCAATTCTGGAATTX_XX_X
8._NA
AAAATTCTTTCCAATTCTGGAATTX_XX_X
9._NA
AAAATTCTTTCCAATTCTGGAATTX_XX_X
10._NA
AAAATTCTTTCCAATTCTGGAATTX_XX_X
11._NA
AAAATTCTTTCCAATTCTGGAATTX_XX_X
12._PA_70_[PER]
AAAATTCTTTCCAATTCTGGAATTX_XX_X
13._GC-04-053-3-17
AAAATTCTTTCCAATTCTGGAATTX_XX_X
14._ICS_1
AAAATTCTTTCCAATTCTGGAATTX_XX_X
15._NA
AAAATTCTTTCCAATTCTGGAATTX_XX_X
16._ICS_1
AAAATTCTTTCCAATTCTGGAATTX_XX_X
17._MARPER_45
AAAA__CT__CCAA__CTGGAATTX_XX_X
18._MARPER_34
AAAA__CT__CCAA__TTGGAATTX_XX_X
19._MARPER_55
AAAA__CT__CCAA__CTGGAATTX_XX_X
20._RUQ_847
________TT______CTGGAA__X_XX_X
21._RUQ_817
________TT______CTGGAA__X_XX_X

Input profile: ICS_1 RUQ_847

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

1._ICS_1 RUQ_847

96.3 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

2._ICS_1

95 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 8
 Dapeng Zhang, 2016

3._ICS_1

95 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 6
 Dapeng Zhang, 2016

4._ICS_1

95 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 5
 Dapeng Zhang, 2016

5._ICS_1

95 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 3
 Dapeng Zhang, 2016

6._ICS_1

95 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

7._ICS_1 NA

95 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

8._ICS_1 NA

95 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

9._ICS_1 NA

95 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

10._ICS_1 NA

95 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

11._ICS_1 NA

95 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

12._PA_70_[PER]

95 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4317 2 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

13._PA_70_[PER] GC-04-053-3-17

95 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1 (roxo)
 Mars, 2018

14._ICS_1

94.9 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 7
 Dapeng Zhang, 2016

15._ICS_1 NA

94.9 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

16._ICS_1

94.7 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block4
 Dapeng Zhang, 2016

17._MARPER_45

94.2 %
26 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 251A
 Dapeng Zhang, 2014

18._MARPER_34

92.3 %
26 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 559
 Dapeng Zhang, 2014

19._MARPER_55

92.3 %
26 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER C 249
 Dapeng Zhang, 2014

20._ICS_1 RUQ_847

91.7 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._ICS_5 RUQ_817

91.7 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP372
11TcSNP429 12TcSNP469 13TcSNP529 14TcSNP534 15TcSNP560
16TcSNP577 17TcSNP591 18TcSNP619 19TcSNP645 20TcSNP723
21TcSNP872 22TcSNP891 23TcSNP917 24TcSNP929 25TcSNP953
26TcSNP994 27TcSNP998 28TcSNP1060 29TcSNP1062 30TcSNP1075
31TcSNP1144 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1350
36TcSNP1414 37TcSNP1442 38TcSNP1458 39TcSNP1484 40TcSNP1520