SNP Profiles matching UF 712

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AA	CC	GG	TT	CC	CC	CC	TT	AA	GG	AA	CC	GG
1._UF_712	CC	AA	CC	GG	TT	CC	CC	CC	TT	AA	GG	AA	CC	GG
2._RUQ_1638	CC	AA	CC	GG	TT	CC	CC	CC	TT	AA	GG	AA	CC	GG
3._RUQ_1638	CC	AA	CC	GG	TT	CC	CC	CC	TT	AA	GG	AA	CC	GG
4._RUQ_1638	__	__	CC	GG	TT	CC	CC	CC	TT	__	GG	AA	CC	GG
5._RUQ_1683	__	__	CC	GG	TT	CC	CC	CC	TT	__	GG	AA	CC	GG
6._UF_712	CC	AA	CC	GG	TT	CC	CC	CC	TT	AA	GG	AA	CC	GG
7._UF_712	CC	AA	CC	GG	TT	CC	CC	CC	TT	AA	GG	AA	CC	GG
8._UF_712	CC	AA	CC	GG	TT	CC	CC	CC	TT	AA	GG	AA	CC	GG
9._GC-01-089-5-06	CC	AA	CC	GG	TT	CC	CC	CC	TT	AA	GG	AA	CC	GG
10._GC-01-089-5-06	CC	AA	CC	GG	TT	CC	CC	CC	TT	AA	GG	AA	CC	GG
11._GC-01-089-5-06	CC	AA	CC	GG	TT	CC	CC	CC	TT	AA	GG	AA	CC	GG
12._UF_712	CC	AA	CC	GG	TT	CC	CC	CC	TT	AA	GG	AA	CC	GG
13._GC-01-089-5-06	CC	AA	CC	GG	TT	CC	CC	CC	TT	AA	GG	AA	CC	GG
14._LCT_EEN_90	CC	AA	CC	GG	TT	CC	__	CC	TT	AA	GG	AC	CC	GG
15._LCT_EEN_90	CC	AA	CC	GG	TT	CC	__	CC	TT	AA	GG	AC	CC	GG
16._RUQ_1379	__	__	CC	GG	TT	CC	CC	CC	TT	__	GG	AA	CC	GT
17._RUQ_469	__	__	CC	GG	TT	CC	CC	CC	TT	__	GG	AA	CC	GT

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GG	TT	CT	GG	GG	GG	TT	CC	TT	TT	AA	CC	GG	AT
1._UF_712	GG	CC	CT	GG	GG	GG	TT	CC	TT	TT	AA	CC	GG	AT
2._RUQ_1638	GG	CC	CT	GG	GG	GG	TT	CC	TT	TT	AA	CC	GG	AT
3._RUQ_1638	GG	CC	CT	GG	GG	GG	TT	CC	TT	TT	AA	CC	GG	AT
4._RUQ_1638	GG	CC	CT	__	GG	GG	TT	__	__	__	AA	CC	__	__
5._RUQ_1683	GG	CC	CT	__	GG	GG	TT	__	__	__	AA	CC	__	__
6._UF_712	GG	CC	CT	AA	GG	GG	TT	CC	TT	TT	AA	CC	GG	TT
7._UF_712	GG	CC	CT	AA	GG	GG	TT	CC	TT	TT	AA	CC	GG	TT
8._UF_712	GG	CC	CT	AA	GG	GG	TT	CC	TT	TT	AA	CC	GG	TT
9._GC-01-089-5-06	GG	CC	CT	AA	GG	GG	TT	CC	TT	TT	AA	CC	GG	TT
10._GC-01-089-5-06	GG	CC	CT	AA	GG	GG	TT	CC	TT	TT	AA	CC	GG	TT
11._GC-01-089-5-06	GG	CC	CT	AA	GG	GG	TT	CC	TT	TT	AA	CC	GG	TT
12._UF_712	GG	CC	CT	AA	GG	GG	TT	CC	TT	TT	AA	CC	GG	TT
13._GC-01-089-5-06	GG	CC	CT	AA	GG	GG	TT	CC	TT	TT	AA	CC	GG	TT
14._LCT_EEN_90	GG	CC	CT	GG	GG	GG	TT	CC	TT	TT	AA	CC	GG	TT
15._LCT_EEN_90	GG	CC	CT	GG	GG	GG	TT	CC	TT	TT	AA	CC	GG	TT
16._RUQ_1379	GG	CC	CT	__	GG	GG	TT	__	__	__	AA	CC	__	__
17._RUQ_469	GG	CC	CT	__	GG	GG	TT	__	__	__	AA	CC	__	__

	29	30	31	32	33	34	35	36	37	38
_Input profile	CC	CC	GG	TT	CC	CC	TT	CC	GG	CC	X_X	X_X	X_X	X_X
1._UF_712	CC	CC	GG	TT	CC	CC	TT	CC	GG	CC	X_X	X_X	X_X	X_X
2._RUQ_1638	CC	CC	GG	TT	CC	CC	TT	CC	GG	CC	X_X	X_X	X_X	X_X
3._RUQ_1638	CC	CC	GG	TT	CC	CC	TT	CC	GG	CC	X_X	X_X	X_X	X_X
4._RUQ_1638	__	__	GG	__	__	__	TT	CC	GG	__	X_X	X_X	X_X	X_X
5._RUQ_1683	__	__	GG	__	__	__	TT	CC	GG	__	X_X	X_X	X_X	X_X
6._UF_712	CC	CC	GG	TT	__	CC	TT	CC	GG	CC	X_X	X_X	X_X	X_X
7._UF_712	CC	CC	GG	TT	__	CC	TT	CC	GG	CC	X_X	X_X	X_X	X_X
8._UF_712	CC	CC	GG	TT	__	CC	TT	CC	GG	CC	X_X	X_X	X_X	X_X
9._GC-01-089-5-06	CC	CC	GG	TT	__	CC	TT	CC	GG	CC	X_X	X_X	X_X	X_X
10._GC-01-089-5-06	CC	CC	GG	TT	__	CC	TT	CC	GG	CC	X_X	X_X	X_X	X_X
11._GC-01-089-5-06	CC	CC	GG	TT	__	CC	TT	CC	GG	CC	X_X	X_X	X_X	X_X
12._UF_712	CC	CC	GG	TT	__	CC	TT	__	GG	CC	X_X	X_X	X_X	X_X
13._GC-01-089-5-06	CC	CC	GG	TT	__	CC	TT	__	GG	CC	X_X	X_X	X_X	X_X
14._LCT_EEN_90	__	CT	GG	TT	CC	CC	TT	CC	GG	CC	X_X	X_X	X_X	X_X
15._LCT_EEN_90	__	CT	GG	TT	CC	CC	TT	CC	GG	CC	X_X	X_X	X_X	X_X
16._RUQ_1379	__	__	GT	__	__	__	TT	CC	GG	__	X_X	X_X	X_X	X_X
17._RUQ_469	__	__	GT	__	__	__	TT	CC	GG	__	X_X	X_X	X_X	X_X

Input profile: UF_712

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: La Montaña Lot 6 Row 39 34_36

Dapeng Zhang, 2016

1._UF_712

97.4 %
38 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

2._UF_712 RUQ_1638

97.4 %
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

3._UF_712 RUQ_1638

97.4 %
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

4._UF_712 RUQ_1638

95.7 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

5._UF_712 RUQ_1683

95.7 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

6._UF_712

93.2 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1506 1

Dapeng Zhang, 2016

7._UF_712

93.2 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1506 2

Dapeng Zhang, 2016

8._UF_712

93.2 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1506 4

Dapeng Zhang, 2016

9._UF_712 GC-01-089-5-06

93.2 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

10._UF_712 GC-01-089-5-06

93.2 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

11._UF_712 GC-01-089-5-06

93.2 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

12._UF_712

93.1 %
36 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1506 3

Dapeng Zhang, 2016

13._UF_712 GC-01-089-5-06

93.1 %
36 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

14._LCT_EEN_90

93.1 %
36 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A A 143 T3

Dapeng Zhang, 2014

15._LCT_EEN_90

93.1 %
36 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A A 143 T3

Dapeng Zhang, 2016

16._AM_1_/57_[POU] RUQ_1379

91.3 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

17._AM_1_/8_[POU] RUQ_469

91.3 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP32	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP193	7	TcSNP226	8	TcSNP242	9	TcSNP372	10	TcSNP429
11	TcSNP469	12	TcSNP529	13	TcSNP534	14	TcSNP560	15	TcSNP577
16	TcSNP591	17	TcSNP619	18	TcSNP645	19	TcSNP723	20	TcSNP872
21	TcSNP891	22	TcSNP917	23	TcSNP953	24	TcSNP994	25	TcSNP998
26	TcSNP1060	27	TcSNP1062	28	TcSNP1075	29	TcSNP1144	30	TcSNP1165
31	TcSNP1253	32	TcSNP1270	33	TcSNP1350	34	TcSNP1414	35	TcSNP1442
36	TcSNP1458	37	TcSNP1484	38	TcSNP1520