SNP Profiles matching SPA 9 [COL]

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 Key

 1234567891011121314
_Input profile
GGTTACGGCTACCGAACTAAGGAACCTT
1._RUQ_691
____ACGGCTACCGAACTAA__AACCTT
2._MATINA_2_/8
GGTTACGGCTAC__AACTAAGGAACCTT
3._NA_45
GGTTACGGCTAACGAGCTAAGGAACCTT
4._GC-01-111-6-08
GGTTACGGCTAACGAGCTAAGGAACCTT
5._NA_45
GGTTACGG__AACGAGCTAAGGAACCTT
6._GC-01-111-6-08
GGTTACGG__AACGAGCTAAGGAACCTT
7._NA_45
GGTTACGGCCAACGAGCTAAGGAACCTT
8._NA_45
GGTTACGGCCAACGAGCTAAGGAACCTT
9._NA_45
GGTTACGGCCAACGAGCTAAGGAACCTT
10._NA_45
GGTTACGGCCAACGAGCTAAGGAACCTT
11._NA_45
GGTTACGGCCAACGAGCTAAGGAACCTT
12._NA_45
GGTTACGGCCAACGAGCTAAGGAACCTT
13._GC-01-111-6-08
GGTTACGGCCAACGAGCTAAGGAACCTT
14._GC-01-111-6-08
GGTTACGGCCAACGAGCTAAGGAACCTT
15._GC-01-111-6-08
GGTTACGGCCAACGAGCTAAGGAACCTT
16._GC-01-111-6-08
GGTTACGGCCAACGAGCTAAGGAACCTT
17._GC-01-111-6-08
GGTTACGGCCAACGAGCTAAGGAACCTT
18._GC-01-111-6-08
GGTTACGGCCAACGAGCTAAGGAACCTT
19._MARPER_28
__TT__GG______AACC__GGAACCTT
20._MARPER_38
__TT__GG______AACC__GGAACCCT
21._RUQ_1577
GGTTCCGGCCACCGAGCTAAGGAACCCT
22._NA_33
GGTTCCGGCCACGGAGCTAAGGAACCCT
23._NA_45
GGTTACGGCCAACGAGCTAAGGAACCTT
24._POUND_25_/A
GGTTCCTTCCACCGGGCTAAGGAACCCT
 1516171819202122232425262728
_Input profile
GGGGAACCAAGGCGCCCCGGAATTAGCC
1._RUQ_691
GGGGAACC__GGCGCC________AGCC
2._MATINA_2_/8
GGGGAACCAA__CGCCCCGGAATTAGCC
3._NA_45
GTGGAACCAAGGCGCCCTGGAATTAGCC
4._GC-01-111-6-08
GTGGAACCAAGGCGCCCTGGAATTAGCC
5._NA_45
GTGGAACCAAGGCGCCCTGGAATTAGCC
6._GC-01-111-6-08
GTGGAACCAAGGCGCCCTGGAATTAGCC
7._NA_45
GTGGAACCAAGGCGCCCTGGAATTAGCC
8._NA_45
GTGGAACCAAGGCGCCCTGGAATTAGCC
9._NA_45
GTGGAACCAAGGCGCCCTGGAATTAGCC
10._NA_45
GTGGAACCAAGGCGCCCTGGAATTAGCC
11._NA_45
GTGGAACCAAGGCGCCCTGGAATTAGCC
12._NA_45
GTGGAACCAAGGCGCCCTGGAATTAGCC
13._GC-01-111-6-08
GTGGAACCAAGGCGCCCTGGAATTAGCC
14._GC-01-111-6-08
GTGGAACCAAGGCGCCCTGGAATTAGCC
15._GC-01-111-6-08
GTGGAACCAAGGCGCCCTGGAATTAGCC
16._GC-01-111-6-08
GTGGAACCAAGGCGCCCTGGAATTAGCC
17._GC-01-111-6-08
GTGGAACCAAGGCGCCCTGGAATTAGCC
18._GC-01-111-6-08
GTGGAACCAAGGCGCCCTGGAATTAGCC
19._MARPER_28
__GG__CCAAGG__CC__GGAATTGG__
20._MARPER_38
__GG__CCAAGG__CC__GGAATTGG__
21._RUQ_1577
GGGGAACTAGGGCGCCCCGGAATTAGCC
22._NA_33
GGGGAACTAGGGCGCCCCGGAATTAGCC
23._NA_45
GTGGAACCAAGGCGCCCTGGAATTAGCC
24._POUND_25_/A
GGGGAACCAAGTCGCCCCGGAATTAGCC
 293031323334353637383940  
_Input profile
GGAACCCCGTTTACTTTTCGAACCX_XX_X
1._RUQ_691
________GT______TTCGAA__X_XX_X
2._MATINA_2_/8
GGAACTCCGTTTAATTTTCGAACCX_XX_X
3._NA_45
GGAACCCCTTCT__TTTTCGAACCX_XX_X
4._GC-01-111-6-08
GGAACCCCTTCT__TTTTCGAACCX_XX_X
5._NA_45
GGAACCCCTTCT__TTTTCGAACCX_XX_X
6._GC-01-111-6-08
GGAACCCCTTCT__TTTTCGAACCX_XX_X
7._NA_45
GGAACCCCTTCT__TTTTCGAACCX_XX_X
8._NA_45
GGAACCCCTTCT__TTTTCGAACCX_XX_X
9._NA_45
GGAACCCCTTCT__TTTTCGAACCX_XX_X
10._NA_45
GGAACCCCTTCT__TTTTCGAACCX_XX_X
11._NA_45
GGAACCCCTTCT__TTTTCGAACCX_XX_X
12._NA_45
GGAACCCCTTCT__TTTTCGAACCX_XX_X
13._GC-01-111-6-08
GGAACCCCTTCT__TTTTCGAACCX_XX_X
14._GC-01-111-6-08
GGAACCCCTTCT__TTTTCGAACCX_XX_X
15._GC-01-111-6-08
GGAACCCCTTCT__TTTTCGAACCX_XX_X
16._GC-01-111-6-08
GGAACCCCTTCT__TTTTCGAACCX_XX_X
17._GC-01-111-6-08
GGAACCCCTTCT__TTTTCGAACCX_XX_X
18._GC-01-111-6-08
GGAACCCCTTCT__TTTTCGAACCX_XX_X
19._MARPER_28
AGAA__CC__TTAA__TTCCAACCX_XX_X
20._MARPER_38
AGAA__CC__TTAA__TTCGAACCX_XX_X
21._RUQ_1577
GGAACCCCGTTTACTTTTCCAGCCX_XX_X
22._NA_33
GGAACCCCGTTTACTTTTCCAACCX_XX_X
23._NA_45
GGAACCCCTTCTCCTTTTCGAACCX_XX_X
24._POUND_25_/A
GGAACCCCGTTTACTTTTCGAACCX_XX_X

Input profile: SPA_9_[COL]

 
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 2 X1 Y17
 Dapeng Zhang, 2016

1._SPA_16_[COL] RUQ_691

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._MATINA_2_/8

97.4 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B B106 T16
 Dapeng Zhang, 2014

3._NA_45

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 9
 Dapeng Zhang, 2016

4._NA_45 GC-01-111-6-08

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

5._NA_45

92.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 14 > F
 Dapeng Zhang, 2016

6._NA_45 GC-01-111-6-08

92.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

7._NA_45

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 3 > FP
 Dapeng Zhang, 2016

8._NA_45

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 11 > F
 Dapeng Zhang, 2016

9._NA_45

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 1 > FP
 Dapeng Zhang, 2016

10._NA_45

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 10
 Dapeng Zhang, 2016

11._NA_45

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 4
 Dapeng Zhang, 2016

12._NA_45

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

13._NA_45 GC-01-111-6-08

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

14._NA_45 GC-01-111-6-08

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

15._NA_45 GC-01-111-6-08

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

16._NA_45 GC-01-111-6-08

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

17._NA_45 GC-01-111-6-08

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

18._NA_45 GC-01-111-6-08

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP2
 Mars, 2018

19._MARPER_28

90.4 %
26 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 647A
 Dapeng Zhang, 2014

20._MARPER_38

90.4 %
26 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 167
 Dapeng Zhang, 2014

21._NA_33 RUQ_1577

90 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

22._NA_33

90 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A D371 T2
 Dapeng Zhang, 2016

23._NA_45

90 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 673
 Dapeng Zhang, 2016

24._POUND_25_/A

90 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F452 T9
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP372
11TcSNP429 12TcSNP469 13TcSNP529 14TcSNP534 15TcSNP560
16TcSNP577 17TcSNP591 18TcSNP619 19TcSNP645 20TcSNP723
21TcSNP872 22TcSNP891 23TcSNP917 24TcSNP929 25TcSNP953
26TcSNP994 27TcSNP998 28TcSNP1060 29TcSNP1062 30TcSNP1075
31TcSNP1144 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1350
36TcSNP1414 37TcSNP1442 38TcSNP1458 39TcSNP1484 40TcSNP1520