SNP Profiles matching NA 45

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
GGTTACGGCTACCGAACTAAGGAACCTT
1._SPA_16_[COL]___
____ACGGCTACCGAACTAA__AACCTT
2._MATINA_2_/8___
GGTTACGGCTAC__AACTAAGGAACCTT
3._NA_45___
GGTTACGGCTAACGAGCTAAGGAACCTT
4._NA_45___
GGTTACGGCTAACGAGCTAAGGAACCTT
5._NA_45___
GGTTACGG__AACGAGCTAAGGAACCTT
6._NA_45___
GGTTACGG__AACGAGCTAAGGAACCTT
7._NA_45___
GGTTACGGCCAACGAGCTAAGGAACCTT
8._NA_45___
GGTTACGGCCAACGAGCTAAGGAACCTT
9._NA_45___
GGTTACGGCCAACGAGCTAAGGAACCTT
10._NA_45___
GGTTACGGCCAACGAGCTAAGGAACCTT
11._NA_45___
GGTTACGGCCAACGAGCTAAGGAACCTT
12._NA_45___
GGTTACGGCCAACGAGCTAAGGAACCTT
13._NA_45___
GGTTACGGCCAACGAGCTAAGGAACCTT
14._NA_45___
GGTTACGGCCAACGAGCTAAGGAACCTT
15._NA_45___
GGTTACGGCCAACGAGCTAAGGAACCTT
16._NA_45___
GGTTACGGCCAACGAGCTAAGGAACCTT
17._NA_45___
GGTTACGGCCAACGAGCTAAGGAACCTT
18._NA_45___
GGTTACGGCCAACGAGCTAAGGAACCTT
19._MARPER_28___
__TT__GG______AACC__GGAACCTT
20._MARPER_38___
__TT__GG______AACC__GGAACCCT
21._NA_33___
GGTTCCGGCCACCGAGCTAAGGAACCCT
22._NA_33___
GGTTCCGGCCACGGAGCTAAGGAACCCT
23._NA_45___
GGTTACGGCCAACGAGCTAAGGAACCTT
24._POUND_25_/A___
GGTTCCTTCCACCGGGCTAAGGAACCCT
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
GGGGAACCAAGGCGCCCCGGAATTAGCC
1._SPA_16_[COL]___
GGGGAACC__GGCGCC________AGCC
2._MATINA_2_/8___
GGGGAACCAA__CGCCCCGGAATTAGCC
3._NA_45___
GTGGAACCAAGGCGCCCTGGAATTAGCC
4._NA_45___
GTGGAACCAAGGCGCCCTGGAATTAGCC
5._NA_45___
GTGGAACCAAGGCGCCCTGGAATTAGCC
6._NA_45___
GTGGAACCAAGGCGCCCTGGAATTAGCC
7._NA_45___
GTGGAACCAAGGCGCCCTGGAATTAGCC
8._NA_45___
GTGGAACCAAGGCGCCCTGGAATTAGCC
9._NA_45___
GTGGAACCAAGGCGCCCTGGAATTAGCC
10._NA_45___
GTGGAACCAAGGCGCCCTGGAATTAGCC
11._NA_45___
GTGGAACCAAGGCGCCCTGGAATTAGCC
12._NA_45___
GTGGAACCAAGGCGCCCTGGAATTAGCC
13._NA_45___
GTGGAACCAAGGCGCCCTGGAATTAGCC
14._NA_45___
GTGGAACCAAGGCGCCCTGGAATTAGCC
15._NA_45___
GTGGAACCAAGGCGCCCTGGAATTAGCC
16._NA_45___
GTGGAACCAAGGCGCCCTGGAATTAGCC
17._NA_45___
GTGGAACCAAGGCGCCCTGGAATTAGCC
18._NA_45___
GTGGAACCAAGGCGCCCTGGAATTAGCC
19._MARPER_28___
__GG__CCAAGG__CC__GGAATTGG__
20._MARPER_38___
__GG__CCAAGG__CC__GGAATTGG__
21._NA_33___
GGGGAACTAGGGCGCCCCGGAATTAGCC
22._NA_33___
GGGGAACTAGGGCGCCCCGGAATTAGCC
23._NA_45___
GTGGAACCAAGGCGCCCTGGAATTAGCC
24._POUND_25_/A___
GGGGAACCAAGTCGCCCCGGAATTAGCC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
GGAACCCCGTTTACTTTTCGAACCX_XX_X
1._SPA_16_[COL]___
________GT______TTCGAA__X_XX_X
2._MATINA_2_/8___
GGAACTCCGTTTAATTTTCGAACCX_XX_X
3._NA_45___
GGAACCCCTTCT__TTTTCGAACCX_XX_X
4._NA_45___
GGAACCCCTTCT__TTTTCGAACCX_XX_X
5._NA_45___
GGAACCCCTTCT__TTTTCGAACCX_XX_X
6._NA_45___
GGAACCCCTTCT__TTTTCGAACCX_XX_X
7._NA_45___
GGAACCCCTTCT__TTTTCGAACCX_XX_X
8._NA_45___
GGAACCCCTTCT__TTTTCGAACCX_XX_X
9._NA_45___
GGAACCCCTTCT__TTTTCGAACCX_XX_X
10._NA_45___
GGAACCCCTTCT__TTTTCGAACCX_XX_X
11._NA_45___
GGAACCCCTTCT__TTTTCGAACCX_XX_X
12._NA_45___
GGAACCCCTTCT__TTTTCGAACCX_XX_X
13._NA_45___
GGAACCCCTTCT__TTTTCGAACCX_XX_X
14._NA_45___
GGAACCCCTTCT__TTTTCGAACCX_XX_X
15._NA_45___
GGAACCCCTTCT__TTTTCGAACCX_XX_X
16._NA_45___
GGAACCCCTTCT__TTTTCGAACCX_XX_X
17._NA_45___
GGAACCCCTTCT__TTTTCGAACCX_XX_X
18._NA_45___
GGAACCCCTTCT__TTTTCGAACCX_XX_X
19._MARPER_28___
AGAA__CC__TTAA__TTCCAACCX_XX_X
20._MARPER_38___
AGAA__CC__TTAA__TTCGAACCX_XX_X
21._NA_33___
GGAACCCCGTTTACTTTTCCAGCCX_XX_X
22._NA_33___
GGAACCCCGTTTACTTTTCCAACCX_XX_X
23._NA_45___
GGAACCCCTTCTCCTTTTCGAACCX_XX_X
24._POUND_25_/A___
GGAACCCCGTTTACTTTTCGAACCX_XX_X

Input profile: SPA_9_[COL]

 
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 2 X1 Y17
 Dapeng Zhang, 2016

1._SPA_16_[COL] RUQ_691

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._MATINA_2_/8

97.4 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B B106 T16
 Dapeng Zhang, 2014

3._NA_45

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 9
 Dapeng Zhang, 2016

4._NA_45 GC-01-111-6-08

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

5._NA_45

92.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 14 > F
 Dapeng Zhang, 2016

6._NA_45 GC-01-111-6-08

92.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

7._NA_45

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 3 > FP
 Dapeng Zhang, 2016

8._NA_45

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 11 > F
 Dapeng Zhang, 2016

9._NA_45

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 1 > FP
 Dapeng Zhang, 2016

10._NA_45

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 10
 Dapeng Zhang, 2016

11._NA_45

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 4
 Dapeng Zhang, 2016

12._NA_45

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 2
 Dapeng Zhang, 2016

13._NA_45 GC-01-111-6-08

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

14._NA_45 GC-01-111-6-08

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

15._NA_45 GC-01-111-6-08

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

16._NA_45 GC-01-111-6-08

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

17._NA_45 GC-01-111-6-08

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

18._NA_45 GC-01-111-6-08

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP2
 Mars, 2018

19._MARPER_28

90.4 %
26 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 647A
 Dapeng Zhang, 2014

20._MARPER_38

90.4 %
26 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 167
 Dapeng Zhang, 2014

21._NA_33 RUQ_1577

90 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

22._NA_33

90 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A D371 T2
 Dapeng Zhang, 2016

23._NA_45

90 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 673
 Dapeng Zhang, 2016

24._POUND_25_/A

90 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F452 T9
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP372
11TcSNP429 12TcSNP469 13TcSNP529 14TcSNP534 15TcSNP560
16TcSNP577 17TcSNP591 18TcSNP619 19TcSNP645 20TcSNP723
21TcSNP872 22TcSNP891 23TcSNP917 24TcSNP929 25TcSNP953
26TcSNP994 27TcSNP998 28TcSNP1060 29TcSNP1062 30TcSNP1075
31TcSNP1144 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1350
36TcSNP1414 37TcSNP1442 38TcSNP1458 39TcSNP1484 40TcSNP1520