SNP Profiles matching POUND 10 /B

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 Key

 1234567891011121314
_Input profile
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
1._EET_400_[ECU]
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
2._EET_400_[ECU]
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
3._EET_400_[ECU]
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
4._GC-01-066-4-02
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
5._GC-01-066-4-02
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
6._GC-01-066-4-02
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
7._POUND_10_/B
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
8._POUND_10_/B
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
9._POUND_10_/B
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
10._POUND_10_/B
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
11._POUND_10_/B
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
12._POUND_10_/B
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
13._GC-01-115-6-12
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
14._GC-01-115-6-12
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
15._GC-01-115-6-12
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
16._GC-01-115-6-12
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
17._GC-08-162-4-05
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
18._GC-08-163-4-06
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
19._GC-08-163-4-06
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
20._POUND_10
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
21._POUND_10_/B
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
22._EET_400_[ECU]
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
23._GC-01-066-4-02
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
24._RUQ_1618
__AAGGTT__TT________CCGG____
25._EET_400_[ECU]
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
26._GC-01-066-4-02
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
27._RUQ_1618
CCAGGGTTTTTTCCCCAAGGCCGGTTAA
 1516171819202122232425262728
_Input profile
GGTTTTCGGGAACCAAGGTTCCCCAAGG
1._EET_400_[ECU]
GGTTTTCGGGAACCAAGGTTCCCCAAGG
2._EET_400_[ECU]
GGTTTTCGGGAACCAAGGTTCCCCAAGG
3._EET_400_[ECU]
GGTTTTCGGGAACCAAGGTTCCCCAAGG
4._GC-01-066-4-02
GGTTTTCGGGAACCAAGGTTCCCCAAGG
5._GC-01-066-4-02
GGTTTTCGGGAACCAAGGTTCCCCAAGG
6._GC-01-066-4-02
GGTTTTCGGGAACCAAGGTTCCCCAAGG
7._POUND_10_/B
GGTTTTCGGGAACCAAGGTTCCCCAAGG
8._POUND_10_/B
GGTTTTCGGGAACCAAGGTTCCCCAAGG
9._POUND_10_/B
GGTTTTCGGGAACCAAGGTTCCCCAAGG
10._POUND_10_/B
GGTTTTCGGGAACCAAGGTTCCCCAAGG
11._POUND_10_/B
GGTTTTCGGGAACCAAGGTTCCCCAAGG
12._POUND_10_/B
GGTTTTCGGGAACCAAGGTTCCCCAAGG
13._GC-01-115-6-12
GGTTTTCGGGAACCAAGGTTCCCCAAGG
14._GC-01-115-6-12
GGTTTTCGGGAACCAAGGTTCCCCAAGG
15._GC-01-115-6-12
GGTTTTCGGGAACCAAGGTTCCCCAAGG
16._GC-01-115-6-12
GGTTTTCGGGAACCAAGGTTCCCCAAGG
17._GC-08-162-4-05
GGTTTTCGGGAACCAAGGTTCCCCAAGG
18._GC-08-163-4-06
GGTTTTCGGGAACCAAGGTTCCCCAAGG
19._GC-08-163-4-06
GGTTTTCGGGAACCAAGGTTCCCCAAGG
20._POUND_10
GGTTTTCGGGAACCAAGGTTCCCCAAGG
21._POUND_10_/B
GGTTTTCGGGAACCAAGGTTCCCCAAGG
22._EET_400_[ECU]
GGTTTTCGGGAACCAAGGTTCCCCAAGG
23._GC-01-066-4-02
GGTTTTCGGGAACCAAGGTTCCCCAAGG
24._RUQ_1618
____TTCGGG__CCAAGGTTCCCCAA__
25._EET_400_[ECU]
GGTTTTCGGGAACCAAGGTTCCCCAAGG
26._GC-01-066-4-02
GGTTTTCGGGAACCAAGGTTCCCCAAGG
27._RUQ_1618
GGTTTTCGGGAACCAAGGTTCCCCAAGG
 29303132333435363738    
_Input profile
AACCGGCCAACCGGAATTGGX_XX_XX_XX_X
1._EET_400_[ECU]
AACCGGCCAACCGGAATTGGX_XX_XX_XX_X
2._EET_400_[ECU]
AACCGGCCAACCGGAATTGGX_XX_XX_XX_X
3._EET_400_[ECU]
AACCGGCCAACCGGAATTGGX_XX_XX_XX_X
4._GC-01-066-4-02
AACCGGCCAACCGGAATTGGX_XX_XX_XX_X
5._GC-01-066-4-02
AACCGGCCAACCGGAATTGGX_XX_XX_XX_X
6._GC-01-066-4-02
AACCGGCCAACCGGAATTGGX_XX_XX_XX_X
7._POUND_10_/B
AACCGGCCAACCGGAATTGGX_XX_XX_XX_X
8._POUND_10_/B
AACCGGCCAACCGGAATTGGX_XX_XX_XX_X
9._POUND_10_/B
AACCGGCCAACCGGAATTGGX_XX_XX_XX_X
10._POUND_10_/B
AACCGGCCAACCGGAATTGGX_XX_XX_XX_X
11._POUND_10_/B
AACCGGCCAACCGGAATTGGX_XX_XX_XX_X
12._POUND_10_/B
AACCGGCCAACCGGAATTGGX_XX_XX_XX_X
13._GC-01-115-6-12
AACCGGCCAACCGGAATTGGX_XX_XX_XX_X
14._GC-01-115-6-12
AACCGGCCAACCGGAATTGGX_XX_XX_XX_X
15._GC-01-115-6-12
AACCGGCCAACCGGAATTGGX_XX_XX_XX_X
16._GC-01-115-6-12
AACCGGCCAACCGGAATTGGX_XX_XX_XX_X
17._GC-08-162-4-05
AACCGGCCAACCGGAATTGGX_XX_XX_XX_X
18._GC-08-163-4-06
AACCGGCCAACCGGAATTGGX_XX_XX_XX_X
19._GC-08-163-4-06
AACCGGCCAACCGGAATTGGX_XX_XX_XX_X
20._POUND_10
AACCGGCCAACCGGAATTGGX_XX_XX_XX_X
21._POUND_10_/B
AACCGGCCAACCGGAATTGGX_XX_XX_XX_X
22._EET_400_[ECU]
AACCGGCCAA__GGAATTGGX_XX_XX_XX_X
23._GC-01-066-4-02
AACCGGCCAA__GGAATTGGX_XX_XX_XX_X
24._RUQ_1618
AACCGGCCAACCGGAA____X_XX_XX_XX_X
25._EET_400_[ECU]
AACCGGCCAACTGGAATTGGX_XX_XX_XX_X
26._GC-01-066-4-02
AACCGGCCAACTGGAATTGGX_XX_XX_XX_X
27._RUQ_1618
AACCGGCCAACCGGAATTGGX_XX_XX_XX_X

Input profile: POUND_10_/B

 
Mars Center for Cocoa Science, Brazil
Location: 1612 9
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

1._EET_400_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 1 > FP
 Dapeng Zhang, 2016

2._EET_400_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 7
 Dapeng Zhang, 2016

3._EET_400_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

4._EET_400_[ECU] GC-01-066-4-02

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

5._EET_400_[ECU] GC-01-066-4-02

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

6._EET_400_[ECU] GC-01-066-4-02

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

7._POUND_10_/B

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 1 > FP
 Dapeng Zhang, 2016

8._POUND_10_/B

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 11 > F
 Dapeng Zhang, 2016

9._POUND_10_/B

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 3 > FP
 Dapeng Zhang, 2016

10._POUND_10_/B

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 7
 Dapeng Zhang, 2016

11._POUND_10_/B

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8406 2
 Dapeng Zhang, 2016

12._POUND_10_/B

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8406 10
 Dapeng Zhang, 2016

13._POUND_10_/B GC-01-115-6-12

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP2
 Mars, 2018

14._POUND_10_/B GC-01-115-6-12

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

15._POUND_10_/B GC-01-115-6-12

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

16._POUND_10_/B GC-01-115-6-12

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP3
 Mars, 2018

17._POUND_10_/B GC-08-162-4-05

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

18._POUND_10_/B GC-08-163-4-06

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

19._POUND_10_/B GC-08-163-4-06

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

20._POUND_10

identical
38 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P11 1146
 Dapeng Zhang, 2016

21._POUND_10_/B

identical
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F429 T13
 Dapeng Zhang, 2016

22._EET_400_[ECU]

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 10 > F
 Dapeng Zhang, 2016

23._EET_400_[ECU] GC-01-066-4-02

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

24._POUND_10_/B RUQ_1618

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

25._EET_400_[ECU]

98.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 5
 Dapeng Zhang, 2016

26._EET_400_[ECU] GC-01-066-4-02

98.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

27._POUND_10_/B RUQ_1618

98.7 %
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1270
6TcSNP1253 7TcSNP1165 8TcSNP1144 9TcSNP1075 10TcSNP1062
11TcSNP1060 12TcSNP998 13TcSNP994 14TcSNP953 15TcSNP929
16TcSNP917 17TcSNP891 18TcSNP872 19TcSNP723 20TcSNP645
21TcSNP619 22TcSNP591 23TcSNP577 24TcSNP560 25TcSNP534
26TcSNP529 27TcSNP469 28TcSNP429 29TcSNP372 30TcSNP242
31TcSNP230 32TcSNP226 33TcSNP193 34TcSNP151 35TcSNP150
36TcSNP144 37TcSNP32 38TcSNP25