SNP Profiles matching POUND 10 /B

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
1._EET_400_[ECU]___
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
2._EET_400_[ECU]___
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
3._EET_400_[ECU]___
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
4._EET_400_[ECU]___
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
5._EET_400_[ECU]___
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
6._EET_400_[ECU]___
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
7._POUND_10_/B___
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
8._POUND_10_/B___
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
9._POUND_10_/B___
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
10._POUND_10_/B___
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
11._POUND_10_/B___
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
12._POUND_10_/B___
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
13._POUND_10_/B___
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
14._POUND_10_/B___
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
15._POUND_10_/B___
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
16._POUND_10_/B___
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
17._POUND_10_/B___
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
18._POUND_10_/B___
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
19._POUND_10_/B___
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
20._POUND_10___
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
21._POUND_10_/B___
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
22._EET_400_[ECU]___
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
23._EET_400_[ECU]___
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
24._POUND_10_/B___
__AAGGTT__TT________CCGG____
25._EET_400_[ECU]___
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
26._EET_400_[ECU]___
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
27._POUND_10_/B___
CCAGGGTTTTTTCCCCAAGGCCGGTTAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
GGTTTTCGGGAACCAAGGTTCCCCAAGG
1._EET_400_[ECU]___
GGTTTTCGGGAACCAAGGTTCCCCAAGG
2._EET_400_[ECU]___
GGTTTTCGGGAACCAAGGTTCCCCAAGG
3._EET_400_[ECU]___
GGTTTTCGGGAACCAAGGTTCCCCAAGG
4._EET_400_[ECU]___
GGTTTTCGGGAACCAAGGTTCCCCAAGG
5._EET_400_[ECU]___
GGTTTTCGGGAACCAAGGTTCCCCAAGG
6._EET_400_[ECU]___
GGTTTTCGGGAACCAAGGTTCCCCAAGG
7._POUND_10_/B___
GGTTTTCGGGAACCAAGGTTCCCCAAGG
8._POUND_10_/B___
GGTTTTCGGGAACCAAGGTTCCCCAAGG
9._POUND_10_/B___
GGTTTTCGGGAACCAAGGTTCCCCAAGG
10._POUND_10_/B___
GGTTTTCGGGAACCAAGGTTCCCCAAGG
11._POUND_10_/B___
GGTTTTCGGGAACCAAGGTTCCCCAAGG
12._POUND_10_/B___
GGTTTTCGGGAACCAAGGTTCCCCAAGG
13._POUND_10_/B___
GGTTTTCGGGAACCAAGGTTCCCCAAGG
14._POUND_10_/B___
GGTTTTCGGGAACCAAGGTTCCCCAAGG
15._POUND_10_/B___
GGTTTTCGGGAACCAAGGTTCCCCAAGG
16._POUND_10_/B___
GGTTTTCGGGAACCAAGGTTCCCCAAGG
17._POUND_10_/B___
GGTTTTCGGGAACCAAGGTTCCCCAAGG
18._POUND_10_/B___
GGTTTTCGGGAACCAAGGTTCCCCAAGG
19._POUND_10_/B___
GGTTTTCGGGAACCAAGGTTCCCCAAGG
20._POUND_10___
GGTTTTCGGGAACCAAGGTTCCCCAAGG
21._POUND_10_/B___
GGTTTTCGGGAACCAAGGTTCCCCAAGG
22._EET_400_[ECU]___
GGTTTTCGGGAACCAAGGTTCCCCAAGG
23._EET_400_[ECU]___
GGTTTTCGGGAACCAAGGTTCCCCAAGG
24._POUND_10_/B___
____TTCGGG__CCAAGGTTCCCCAA__
25._EET_400_[ECU]___
GGTTTTCGGGAACCAAGGTTCCCCAAGG
26._EET_400_[ECU]___
GGTTTTCGGGAACCAAGGTTCCCCAAGG
27._POUND_10_/B___
GGTTTTCGGGAACCAAGGTTCCCCAAGG
 29 30 31 32 33 34 35 36 37 38     
_Input profile
AACCGGCCAACCGGAATTGGX_XX_XX_XX_X
1._EET_400_[ECU]___
AACCGGCCAACCGGAATTGGX_XX_XX_XX_X
2._EET_400_[ECU]___
AACCGGCCAACCGGAATTGGX_XX_XX_XX_X
3._EET_400_[ECU]___
AACCGGCCAACCGGAATTGGX_XX_XX_XX_X
4._EET_400_[ECU]___
AACCGGCCAACCGGAATTGGX_XX_XX_XX_X
5._EET_400_[ECU]___
AACCGGCCAACCGGAATTGGX_XX_XX_XX_X
6._EET_400_[ECU]___
AACCGGCCAACCGGAATTGGX_XX_XX_XX_X
7._POUND_10_/B___
AACCGGCCAACCGGAATTGGX_XX_XX_XX_X
8._POUND_10_/B___
AACCGGCCAACCGGAATTGGX_XX_XX_XX_X
9._POUND_10_/B___
AACCGGCCAACCGGAATTGGX_XX_XX_XX_X
10._POUND_10_/B___
AACCGGCCAACCGGAATTGGX_XX_XX_XX_X
11._POUND_10_/B___
AACCGGCCAACCGGAATTGGX_XX_XX_XX_X
12._POUND_10_/B___
AACCGGCCAACCGGAATTGGX_XX_XX_XX_X
13._POUND_10_/B___
AACCGGCCAACCGGAATTGGX_XX_XX_XX_X
14._POUND_10_/B___
AACCGGCCAACCGGAATTGGX_XX_XX_XX_X
15._POUND_10_/B___
AACCGGCCAACCGGAATTGGX_XX_XX_XX_X
16._POUND_10_/B___
AACCGGCCAACCGGAATTGGX_XX_XX_XX_X
17._POUND_10_/B___
AACCGGCCAACCGGAATTGGX_XX_XX_XX_X
18._POUND_10_/B___
AACCGGCCAACCGGAATTGGX_XX_XX_XX_X
19._POUND_10_/B___
AACCGGCCAACCGGAATTGGX_XX_XX_XX_X
20._POUND_10___
AACCGGCCAACCGGAATTGGX_XX_XX_XX_X
21._POUND_10_/B___
AACCGGCCAACCGGAATTGGX_XX_XX_XX_X
22._EET_400_[ECU]___
AACCGGCCAA__GGAATTGGX_XX_XX_XX_X
23._EET_400_[ECU]___
AACCGGCCAA__GGAATTGGX_XX_XX_XX_X
24._POUND_10_/B___
AACCGGCCAACCGGAA____X_XX_XX_XX_X
25._EET_400_[ECU]___
AACCGGCCAACTGGAATTGGX_XX_XX_XX_X
26._EET_400_[ECU]___
AACCGGCCAACTGGAATTGGX_XX_XX_XX_X
27._POUND_10_/B___
AACCGGCCAACCGGAATTGGX_XX_XX_XX_X

Input profile: POUND_10_/B

 
Mars Center for Cocoa Science, Brazil
Location: 1612 9
 Dapeng Zhang, 2016

1._EET_400_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 1 > FP
 Dapeng Zhang, 2016

2._EET_400_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 7
 Dapeng Zhang, 2016

3._EET_400_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 2
 Dapeng Zhang, 2016

4._EET_400_[ECU] GC-01-066-4-02

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

5._EET_400_[ECU] GC-01-066-4-02

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

6._EET_400_[ECU] GC-01-066-4-02

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

7._POUND_10_/B

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 1 > FP
 Dapeng Zhang, 2016

8._POUND_10_/B

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 11 > F
 Dapeng Zhang, 2016

9._POUND_10_/B

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 3 > FP
 Dapeng Zhang, 2016

10._POUND_10_/B

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 7
 Dapeng Zhang, 2016

11._POUND_10_/B

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8406 2
 Dapeng Zhang, 2016

12._POUND_10_/B

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8406 10
 Dapeng Zhang, 2016

13._POUND_10_/B GC-01-115-6-12

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP2
 Mars, 2018

14._POUND_10_/B GC-01-115-6-12

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

15._POUND_10_/B GC-01-115-6-12

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

16._POUND_10_/B GC-01-115-6-12

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP3
 Mars, 2018

17._POUND_10_/B GC-08-162-4-05

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

18._POUND_10_/B GC-08-163-4-06

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

19._POUND_10_/B GC-08-163-4-06

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

20._POUND_10

identical
38 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P11 1146
 Dapeng Zhang, 2016

21._POUND_10_/B

identical
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F429 T13
 Dapeng Zhang, 2016

22._EET_400_[ECU]

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 10 > F
 Dapeng Zhang, 2016

23._EET_400_[ECU] GC-01-066-4-02

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

24._POUND_10_/B RUQ_1618

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

25._EET_400_[ECU]

98.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 5
 Dapeng Zhang, 2016

26._EET_400_[ECU] GC-01-066-4-02

98.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

27._POUND_10_/B RUQ_1618

98.7 %
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1270
6TcSNP1253 7TcSNP1165 8TcSNP1144 9TcSNP1075 10TcSNP1062
11TcSNP1060 12TcSNP998 13TcSNP994 14TcSNP953 15TcSNP929
16TcSNP917 17TcSNP891 18TcSNP872 19TcSNP723 20TcSNP645
21TcSNP619 22TcSNP591 23TcSNP577 24TcSNP560 25TcSNP534
26TcSNP529 27TcSNP469 28TcSNP429 29TcSNP372 30TcSNP242
31TcSNP230 32TcSNP226 33TcSNP193 34TcSNP151 35TcSNP150
36TcSNP144 37TcSNP32 38TcSNP25