SNP Profiles matching POUND 10 /B

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 Key

 1234567891011121314
_Input profile
CCAAGGTTTTCCTTTTCCCCAAGGCCGG
1._POUND_10
CCAAGGTTTTCCTTTTCCCCAAGGCCGG
2._EET_400_[ECU]
CCAAGGTTTT__TTTTCCCCAAGGCCGG
3._EET_400_[ECU]
CCAAGGTTTT__TTTTCCCCAAGGCCGG
4._EET_400_[ECU]
CCAAGGTTTT__TTTTCCCCAAGGCCGG
5._GC-01-066-4-02
CCAAGGTTTT__TTTTCCCCAAGGCCGG
6._GC-01-066-4-02
CCAAGGTTTT__TTTTCCCCAAGGCCGG
7._GC-01-066-4-02
CCAAGGTTTT__TTTTCCCCAAGGCCGG
8._POUND_10_/B
CCAAGGTTTT__TTTTCCCCAAGGCCGG
9._POUND_10_/B
CCAAGGTTTT__TTTTCCCCAAGGCCGG
10._POUND_10_/B
CCAAGGTTTT__TTTTCCCCAAGGCCGG
11._POUND_10_/B
CCAAGGTTTT__TTTTCCCCAAGGCCGG
12._POUND_10_/B
CCAAGGTTTT__TTTTCCCCAAGGCCGG
13._POUND_10_/B
CCAAGGTTTT__TTTTCCCCAAGGCCGG
14._GC-01-115-6-12
CCAAGGTTTT__TTTTCCCCAAGGCCGG
15._GC-01-115-6-12
CCAAGGTTTT__TTTTCCCCAAGGCCGG
16._GC-01-115-6-12
CCAAGGTTTT__TTTTCCCCAAGGCCGG
17._GC-08-162-4-05
CCAAGGTTTT__TTTTCCCCAAGGCCGG
18._GC-08-163-4-06
CCAAGGTTTT__TTTTCCCCAAGGCCGG
19._GC-08-163-4-06
CCAAGGTTTT__TTTTCCCCAAGGCCGG
20._EET_400_[ECU]
CCAAGGTTTT__TTTTCCCCAAGGCCGG
21._GC-01-066-4-02
CCAAGGTTTT__TTTTCCCCAAGGCCGG
22._POUND_10_/B
CCAAGGTT____TTTTCCCCAAGGCCGG
23._GC-01-115-6-12
CCAAGGTT____TTTTCCCCAAGGCCGG
24._RUQ_1618
__AAGGTT______TT________CCGG
25._RUQ_1618
CCAGGGTTTTCCTTTTCCCCAAGGCCGG
26._EET_400_[ECU]
CCAAGGTTTT__TTTTCCCCAAGGCCGG
27._GC-01-066-4-02
CCAAGGTTTT__TTTTCCCCAAGGCCGG
 1516171819202122232425262728
_Input profile
TTAAGGTTTTCGGGAACCAAGGTTCCCC
1._POUND_10
TTAAGGTTTTCGGGAACCAAGGTTCCCC
2._EET_400_[ECU]
TTAAGGTTTTCGGGAACCAAGGTTCCCC
3._EET_400_[ECU]
TTAAGGTTTTCGGGAACCAAGGTTCCCC
4._EET_400_[ECU]
TTAAGGTTTTCGGGAACCAAGGTTCCCC
5._GC-01-066-4-02
TTAAGGTTTTCGGGAACCAAGGTTCCCC
6._GC-01-066-4-02
TTAAGGTTTTCGGGAACCAAGGTTCCCC
7._GC-01-066-4-02
TTAAGGTTTTCGGGAACCAAGGTTCCCC
8._POUND_10_/B
TTAAGGTTTTCGGGAACCAAGGTTCCCC
9._POUND_10_/B
TTAAGGTTTTCGGGAACCAAGGTTCCCC
10._POUND_10_/B
TTAAGGTTTTCGGGAACCAAGGTTCCCC
11._POUND_10_/B
TTAAGGTTTTCGGGAACCAAGGTTCCCC
12._POUND_10_/B
TTAAGGTTTTCGGGAACCAAGGTTCCCC
13._POUND_10_/B
TTAAGGTTTTCGGGAACCAAGGTTCCCC
14._GC-01-115-6-12
TTAAGGTTTTCGGGAACCAAGGTTCCCC
15._GC-01-115-6-12
TTAAGGTTTTCGGGAACCAAGGTTCCCC
16._GC-01-115-6-12
TTAAGGTTTTCGGGAACCAAGGTTCCCC
17._GC-08-162-4-05
TTAAGGTTTTCGGGAACCAAGGTTCCCC
18._GC-08-163-4-06
TTAAGGTTTTCGGGAACCAAGGTTCCCC
19._GC-08-163-4-06
TTAAGGTTTTCGGGAACCAAGGTTCCCC
20._EET_400_[ECU]
TTAAGGTTTTCGGGAACCAAGGTTCCCC
21._GC-01-066-4-02
TTAAGGTTTTCGGGAACCAAGGTTCCCC
22._POUND_10_/B
TTAAGGTTTTCGGGAACCAAGGTTCCCC
23._GC-01-115-6-12
TTAAGGTTTTCGGGAACCAAGGTTCCCC
24._RUQ_1618
________TTCGGG__CCAAGGTTCCCC
25._RUQ_1618
TTAAGGTTTTCGGGAACCAAGGTTCCCC
26._EET_400_[ECU]
TTAAGGTTTTCGGGAACCAAGGTTCCCC
27._GC-01-066-4-02
TTAAGGTTTTCGGGAACCAAGGTTCCCC
 293031323334353637383940  
_Input profile
AAGGAACCGGCCAACCGGAATTGGX_XX_X
1._POUND_10
AAGGAACCGGCCAACCGGAATTGGX_XX_X
2._EET_400_[ECU]
AAGGAACCGGCCAACCGGAATTGGX_XX_X
3._EET_400_[ECU]
AAGGAACCGGCCAACCGGAATTGGX_XX_X
4._EET_400_[ECU]
AAGGAACCGGCCAACCGGAATTGGX_XX_X
5._GC-01-066-4-02
AAGGAACCGGCCAACCGGAATTGGX_XX_X
6._GC-01-066-4-02
AAGGAACCGGCCAACCGGAATTGGX_XX_X
7._GC-01-066-4-02
AAGGAACCGGCCAACCGGAATTGGX_XX_X
8._POUND_10_/B
AAGGAACCGGCCAACCGGAATTGGX_XX_X
9._POUND_10_/B
AAGGAACCGGCCAACCGGAATTGGX_XX_X
10._POUND_10_/B
AAGGAACCGGCCAACCGGAATTGGX_XX_X
11._POUND_10_/B
AAGGAACCGGCCAACCGGAATTGGX_XX_X
12._POUND_10_/B
AAGGAACCGGCCAACCGGAATTGGX_XX_X
13._POUND_10_/B
AAGGAACCGGCCAACCGGAATTGGX_XX_X
14._GC-01-115-6-12
AAGGAACCGGCCAACCGGAATTGGX_XX_X
15._GC-01-115-6-12
AAGGAACCGGCCAACCGGAATTGGX_XX_X
16._GC-01-115-6-12
AAGGAACCGGCCAACCGGAATTGGX_XX_X
17._GC-08-162-4-05
AAGGAACCGGCCAACCGGAATTGGX_XX_X
18._GC-08-163-4-06
AAGGAACCGGCCAACCGGAATTGGX_XX_X
19._GC-08-163-4-06
AAGGAACCGGCCAACCGGAATTGGX_XX_X
20._EET_400_[ECU]
AAGGAACCGGCCAA__GGAATTGGX_XX_X
21._GC-01-066-4-02
AAGGAACCGGCCAA__GGAATTGGX_XX_X
22._POUND_10_/B
AAGGAACCGGCCAACCGGAATTGGX_XX_X
23._GC-01-115-6-12
AAGGAACCGGCCAACCGGAATTGGX_XX_X
24._RUQ_1618
AA__AACCGGCCAACCGGAA____X_XX_X
25._RUQ_1618
AAGGAACCGGCCAACCGGAATTGGX_XX_X
26._EET_400_[ECU]
AAGGAACCGGCCAACTGGAATTGGX_XX_X
27._GC-01-066-4-02
AAGGAACCGGCCAACTGGAATTGGX_XX_X

Input profile: POUND_10_/B

 
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F429 T13
 Dapeng Zhang, 2016

1._POUND_10

identical
40 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P11 1146
 Dapeng Zhang, 2016

2._EET_400_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 1 > FP
 Dapeng Zhang, 2016

3._EET_400_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 7
 Dapeng Zhang, 2016

4._EET_400_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

5._EET_400_[ECU] GC-01-066-4-02

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

6._EET_400_[ECU] GC-01-066-4-02

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

7._EET_400_[ECU] GC-01-066-4-02

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

8._POUND_10_/B

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 1 > FP
 Dapeng Zhang, 2016

9._POUND_10_/B

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 11 > F
 Dapeng Zhang, 2016

10._POUND_10_/B

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 3 > FP
 Dapeng Zhang, 2016

11._POUND_10_/B

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 7
 Dapeng Zhang, 2016

12._POUND_10_/B

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8406 2
 Dapeng Zhang, 2016

13._POUND_10_/B

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8406 10
 Dapeng Zhang, 2016

14._POUND_10_/B GC-01-115-6-12

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP2
 Mars, 2018

15._POUND_10_/B GC-01-115-6-12

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

16._POUND_10_/B GC-01-115-6-12

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP3
 Mars, 2018

17._POUND_10_/B GC-08-162-4-05

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

18._POUND_10_/B GC-08-163-4-06

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

19._POUND_10_/B GC-08-163-4-06

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

20._EET_400_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 10 > F
 Dapeng Zhang, 2016

21._EET_400_[ECU] GC-01-066-4-02

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

22._POUND_10_/B

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 9
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

23._POUND_10_/B GC-01-115-6-12

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

24._POUND_10_/B RUQ_1618

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

25._POUND_10_/B RUQ_1618

98.8 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

26._EET_400_[ECU]

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 5
 Dapeng Zhang, 2016

27._EET_400_[ECU] GC-01-066-4-02

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25