SNP Profiles matching POUND 10 /B

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAAGGTTTTCCTTTTCCCCAAGGCCGG
1._POUND_10___
CCAAGGTTTTCCTTTTCCCCAAGGCCGG
2._EET_400_[ECU]___
CCAAGGTTTT__TTTTCCCCAAGGCCGG
3._EET_400_[ECU]___
CCAAGGTTTT__TTTTCCCCAAGGCCGG
4._EET_400_[ECU]___
CCAAGGTTTT__TTTTCCCCAAGGCCGG
5._EET_400_[ECU]___
CCAAGGTTTT__TTTTCCCCAAGGCCGG
6._EET_400_[ECU]___
CCAAGGTTTT__TTTTCCCCAAGGCCGG
7._EET_400_[ECU]___
CCAAGGTTTT__TTTTCCCCAAGGCCGG
8._POUND_10_/B___
CCAAGGTTTT__TTTTCCCCAAGGCCGG
9._POUND_10_/B___
CCAAGGTTTT__TTTTCCCCAAGGCCGG
10._POUND_10_/B___
CCAAGGTTTT__TTTTCCCCAAGGCCGG
11._POUND_10_/B___
CCAAGGTTTT__TTTTCCCCAAGGCCGG
12._POUND_10_/B___
CCAAGGTTTT__TTTTCCCCAAGGCCGG
13._POUND_10_/B___
CCAAGGTTTT__TTTTCCCCAAGGCCGG
14._POUND_10_/B___
CCAAGGTTTT__TTTTCCCCAAGGCCGG
15._POUND_10_/B___
CCAAGGTTTT__TTTTCCCCAAGGCCGG
16._POUND_10_/B___
CCAAGGTTTT__TTTTCCCCAAGGCCGG
17._POUND_10_/B___
CCAAGGTTTT__TTTTCCCCAAGGCCGG
18._POUND_10_/B___
CCAAGGTTTT__TTTTCCCCAAGGCCGG
19._POUND_10_/B___
CCAAGGTTTT__TTTTCCCCAAGGCCGG
20._EET_400_[ECU]___
CCAAGGTTTT__TTTTCCCCAAGGCCGG
21._EET_400_[ECU]___
CCAAGGTTTT__TTTTCCCCAAGGCCGG
22._POUND_10_/B___
CCAAGGTT____TTTTCCCCAAGGCCGG
23._POUND_10_/B___
CCAAGGTT____TTTTCCCCAAGGCCGG
24._POUND_10_/B___
__AAGGTT______TT________CCGG
25._POUND_10_/B___
CCAGGGTTTTCCTTTTCCCCAAGGCCGG
26._EET_400_[ECU]___
CCAAGGTTTT__TTTTCCCCAAGGCCGG
27._EET_400_[ECU]___
CCAAGGTTTT__TTTTCCCCAAGGCCGG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
TTAAGGTTTTCGGGAACCAAGGTTCCCC
1._POUND_10___
TTAAGGTTTTCGGGAACCAAGGTTCCCC
2._EET_400_[ECU]___
TTAAGGTTTTCGGGAACCAAGGTTCCCC
3._EET_400_[ECU]___
TTAAGGTTTTCGGGAACCAAGGTTCCCC
4._EET_400_[ECU]___
TTAAGGTTTTCGGGAACCAAGGTTCCCC
5._EET_400_[ECU]___
TTAAGGTTTTCGGGAACCAAGGTTCCCC
6._EET_400_[ECU]___
TTAAGGTTTTCGGGAACCAAGGTTCCCC
7._EET_400_[ECU]___
TTAAGGTTTTCGGGAACCAAGGTTCCCC
8._POUND_10_/B___
TTAAGGTTTTCGGGAACCAAGGTTCCCC
9._POUND_10_/B___
TTAAGGTTTTCGGGAACCAAGGTTCCCC
10._POUND_10_/B___
TTAAGGTTTTCGGGAACCAAGGTTCCCC
11._POUND_10_/B___
TTAAGGTTTTCGGGAACCAAGGTTCCCC
12._POUND_10_/B___
TTAAGGTTTTCGGGAACCAAGGTTCCCC
13._POUND_10_/B___
TTAAGGTTTTCGGGAACCAAGGTTCCCC
14._POUND_10_/B___
TTAAGGTTTTCGGGAACCAAGGTTCCCC
15._POUND_10_/B___
TTAAGGTTTTCGGGAACCAAGGTTCCCC
16._POUND_10_/B___
TTAAGGTTTTCGGGAACCAAGGTTCCCC
17._POUND_10_/B___
TTAAGGTTTTCGGGAACCAAGGTTCCCC
18._POUND_10_/B___
TTAAGGTTTTCGGGAACCAAGGTTCCCC
19._POUND_10_/B___
TTAAGGTTTTCGGGAACCAAGGTTCCCC
20._EET_400_[ECU]___
TTAAGGTTTTCGGGAACCAAGGTTCCCC
21._EET_400_[ECU]___
TTAAGGTTTTCGGGAACCAAGGTTCCCC
22._POUND_10_/B___
TTAAGGTTTTCGGGAACCAAGGTTCCCC
23._POUND_10_/B___
TTAAGGTTTTCGGGAACCAAGGTTCCCC
24._POUND_10_/B___
________TTCGGG__CCAAGGTTCCCC
25._POUND_10_/B___
TTAAGGTTTTCGGGAACCAAGGTTCCCC
26._EET_400_[ECU]___
TTAAGGTTTTCGGGAACCAAGGTTCCCC
27._EET_400_[ECU]___
TTAAGGTTTTCGGGAACCAAGGTTCCCC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AAGGAACCGGCCAACCGGAATTGGX_XX_X
1._POUND_10___
AAGGAACCGGCCAACCGGAATTGGX_XX_X
2._EET_400_[ECU]___
AAGGAACCGGCCAACCGGAATTGGX_XX_X
3._EET_400_[ECU]___
AAGGAACCGGCCAACCGGAATTGGX_XX_X
4._EET_400_[ECU]___
AAGGAACCGGCCAACCGGAATTGGX_XX_X
5._EET_400_[ECU]___
AAGGAACCGGCCAACCGGAATTGGX_XX_X
6._EET_400_[ECU]___
AAGGAACCGGCCAACCGGAATTGGX_XX_X
7._EET_400_[ECU]___
AAGGAACCGGCCAACCGGAATTGGX_XX_X
8._POUND_10_/B___
AAGGAACCGGCCAACCGGAATTGGX_XX_X
9._POUND_10_/B___
AAGGAACCGGCCAACCGGAATTGGX_XX_X
10._POUND_10_/B___
AAGGAACCGGCCAACCGGAATTGGX_XX_X
11._POUND_10_/B___
AAGGAACCGGCCAACCGGAATTGGX_XX_X
12._POUND_10_/B___
AAGGAACCGGCCAACCGGAATTGGX_XX_X
13._POUND_10_/B___
AAGGAACCGGCCAACCGGAATTGGX_XX_X
14._POUND_10_/B___
AAGGAACCGGCCAACCGGAATTGGX_XX_X
15._POUND_10_/B___
AAGGAACCGGCCAACCGGAATTGGX_XX_X
16._POUND_10_/B___
AAGGAACCGGCCAACCGGAATTGGX_XX_X
17._POUND_10_/B___
AAGGAACCGGCCAACCGGAATTGGX_XX_X
18._POUND_10_/B___
AAGGAACCGGCCAACCGGAATTGGX_XX_X
19._POUND_10_/B___
AAGGAACCGGCCAACCGGAATTGGX_XX_X
20._EET_400_[ECU]___
AAGGAACCGGCCAA__GGAATTGGX_XX_X
21._EET_400_[ECU]___
AAGGAACCGGCCAA__GGAATTGGX_XX_X
22._POUND_10_/B___
AAGGAACCGGCCAACCGGAATTGGX_XX_X
23._POUND_10_/B___
AAGGAACCGGCCAACCGGAATTGGX_XX_X
24._POUND_10_/B___
AA__AACCGGCCAACCGGAA____X_XX_X
25._POUND_10_/B___
AAGGAACCGGCCAACCGGAATTGGX_XX_X
26._EET_400_[ECU]___
AAGGAACCGGCCAACTGGAATTGGX_XX_X
27._EET_400_[ECU]___
AAGGAACCGGCCAACTGGAATTGGX_XX_X

Input profile: POUND_10_/B

 
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F429 T13
 Dapeng Zhang, 2016

1._POUND_10

identical
40 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P11 1146
 Dapeng Zhang, 2016

2._EET_400_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 1 > FP
 Dapeng Zhang, 2016

3._EET_400_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 7
 Dapeng Zhang, 2016

4._EET_400_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 2
 Dapeng Zhang, 2016

5._EET_400_[ECU] GC-01-066-4-02

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

6._EET_400_[ECU] GC-01-066-4-02

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

7._EET_400_[ECU] GC-01-066-4-02

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

8._POUND_10_/B

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 1 > FP
 Dapeng Zhang, 2016

9._POUND_10_/B

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 11 > F
 Dapeng Zhang, 2016

10._POUND_10_/B

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 3 > FP
 Dapeng Zhang, 2016

11._POUND_10_/B

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 7
 Dapeng Zhang, 2016

12._POUND_10_/B

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8406 2
 Dapeng Zhang, 2016

13._POUND_10_/B

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8406 10
 Dapeng Zhang, 2016

14._POUND_10_/B GC-01-115-6-12

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP2
 Mars, 2018

15._POUND_10_/B GC-01-115-6-12

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

16._POUND_10_/B GC-01-115-6-12

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP3
 Mars, 2018

17._POUND_10_/B GC-08-162-4-05

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

18._POUND_10_/B GC-08-163-4-06

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

19._POUND_10_/B GC-08-163-4-06

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

20._EET_400_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 10 > F
 Dapeng Zhang, 2016

21._EET_400_[ECU] GC-01-066-4-02

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

22._POUND_10_/B

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 9
 Dapeng Zhang, 2016

23._POUND_10_/B GC-01-115-6-12

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

24._POUND_10_/B RUQ_1618

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

25._POUND_10_/B RUQ_1618

98.8 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

26._EET_400_[ECU]

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 5
 Dapeng Zhang, 2016

27._EET_400_[ECU] GC-01-066-4-02

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25