SNP Profiles matching PA 72 [PER]

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 Key

 1234567891011121314
_Input profile
CTAGGGCTTTACCCTTCCCCAAGGCCAG
1._PA_72_[PER]
CTAGGGCTTTACCCTTCCCCAAGGCCAG
2._PA_72_[PER]
CTAGGGCTTTACCCTTCCCCAAGGCCAG
3._PA_72_[PER]
CTAGGGCTTTACCCTTCCCCAAGGCCAG
4._PA_72_[PER]
CTAGGGCTTTACCCTTCCCCAAGGCCAG
5._PA_72_[PER]
CTAGGGCTTTACCCTTCCCCAAGGCCAG
6._PA_72_[PER]
CTAGGGCTTTACCCTTCCCCAAGGCCAG
7._PA_72_[PER]
CTAGGGCTTTACCCTTCCCCAAGGCCAG
8._PA_72_[PER]
CTAGGGCTTTACCCTTCCCCAAGGCCAG
9._PA_72_[PER]
CTAGGGCTTTACCCTTCCCCAAGGCCAG
10._GC-08-051-1-62
CTAGGGCTTTACCCTTCCCCAAGGCCAG
11._GC-08-051-1-62
CTAGGGCTTTACCCTTCCCCAAGGCCAG
12._GC-08-051-1-62
CTAGGGCTTTACCCTTCCCCAAGGCCAG
13._GC-08-051-1-62
CTAGGGCTTTACCCTTCCCCAAGGCCAG
14._GC-08-051-1-62
CTAGGGCTTTACCCTTCCCCAAGGCCAG
15._GC-08-051-1-62
CTAGGGCTTTACCCTTCCCCAAGGCCAG
16._GC-08-051-1-62
CTAGGGCTTTACCCTTCCCCAAGGCCAG
17._GC-08-051-1-62
CTAGGGCTTTACCCTTCCCCAAGGCCAG
18._GC-08-051-1-62
CTAGGGCTTTACCCTTCCCCAAGGCCAG
19._GC-08-051-1-62
CTAGGGCTTTACCCTTCCCCAAGGCCAG
20._PA_72_[PER]
CTAGGGCTTTACCCTTCCCCAAGGCCAG
21._PA_72_[PER]
CTAGGGCTTTACCCTTCCCCAAGGCCAG
22._RUQ_1569
_AGCGCC___TT____CCAG
23._RUQ_1564
_AGCGCC___TT____CCAG
24._RUQ_32
CCGGCGCTTTACCCTTCCCCAAGGCCAG
25._PA_56_[PER]
CCGGCGCTTTACCCTTCCCCAAGGCCAG
26._PA_41_[PER]
CCAGGGCCTTACCTTTCCCCAAGGCCAG
27._RUQ_1531
_AGGGCT___TT____CCAG
28._MO_9
CCGGCGCTTTACCCTTCCCCAAGGCCAG
29._MO_9
CCGGCGCTTTACCCTTCCCCAAGGCCAG
30._MO_9
CCGGCGCTTTACCCTTCCCCAAGGCCAG
31._MO_9
CCGGCGCTTTACCCTTCCCCAAGGCCAG
32._GC-05-071-2-22
CCGGCGCTTTACCCTTCCCCAAGGCCAG
33._GC-05-071-2-22
CCGGCGCTTTACCCTTCCCCAAGGCCAG
34._GC-05-119-3-21
CCGGCGCTTTACCCTTCCCCAAGGCCAG
35._GC-05-119-3-21
CCGGCGCTTTACCCTTCCCCAAGGCCAG
36._PA_56_[PER]
CCGGCGCTTTACCCTTCCCCAAGGCCAG
37._PA_56_[PER]
CCGGCGCTTTACCCTTCCCCAAGGCCAG
38._PA_56_[PER]
CCGGCGCTTTACCCTTCCCCAAGGCCAG
39._PA_56_[PER]
CCGGCGCTTTACCCTTCCCCAAGGCCAG
40._NA
CCGGCGCTTTACCCTTCCCCAAGGCCAG
41._NA
CCGGCGCTTTACCCTTCCCCAAGGCCAG
42._NA
CCGGCGCTTTACCCTTCCCCAAGGCCAG
43._NA
CCGGCGCTTTACCCTTCCCCAAGGCCAG
44._MO_9
CCGGCGCTTTACCCTTCCCCAAGGCCAG
45._GC-05-119-3-21
CCGGCGCTTTACCCTTCCCCAAGGCCAG
46._PA_56_[PER]
CCGGCGCTTTACCCTTCCCCAAGGCCAG
47._NA
CCGGCGCTTTACCCTTCCCCAAGGCCAG
 1516171819202122232425262728
_Input profile
CTAAGGCTCCGGGGAATTCCCGGTCTAC
1._PA_72_[PER]
CTAAGGCTCCGGGGAATTCCCGGTCTAC
2._PA_72_[PER]
CTAAGGCTCCGGGGAATTCCCGGTCTAC
3._PA_72_[PER]
CTAAGGCTCCGGGGAATTCCCGGTCTAC
4._PA_72_[PER]
CTAAGGCTCCGGGGAATTCCCGGTCTAC
5._PA_72_[PER]
CTAAGGCTCCGGGGAATTCCCGGTCTAC
6._PA_72_[PER]
CTAAGGCTCCGGGGAATTCCCGGTCTAC
7._PA_72_[PER]
CTAAGGCTCCGGGGAATTCCCGGTCTAC
8._PA_72_[PER]
CTAAGGCTCCGGGGAATTCCCGGTCTAC
9._PA_72_[PER]
CTAAGGCTCCGGGGAATTCCCGGTCTAC
10._GC-08-051-1-62
CTAAGGCTCCGGGGAATTCCCGGTCTAC
11._GC-08-051-1-62
CTAAGGCTCCGGGGAATTCCCGGTCTAC
12._GC-08-051-1-62
CTAAGGCTCCGGGGAATTCCCGGTCTAC
13._GC-08-051-1-62
CTAAGGCTCCGGGGAATTCCCGGTCTAC
14._GC-08-051-1-62
CTAAGGCTCCGGGGAATTCCCGGTCTAC
15._GC-08-051-1-62
CTAAGGCTCCGGGGAATTCCCGGTCTAC
16._GC-08-051-1-62
CTAAGGCTCCGGGGAATTCCCGGTCTAC
17._GC-08-051-1-62
CTAAGGCTCCGGGGAATTCCCGGTCTAC
18._GC-08-051-1-62
CTAAGGCTCCGGGGAATTCCCGGTCTAC
19._GC-08-051-1-62
CTAAGGCTCCGGGGAATTCCCGGTCTAC
20._PA_72_[PER]
CTAAGGCTCCGGGGAATTCCCGGTCTAC
21._PA_72_[PER]
CTAAGGCTCCGG-AATTCCCGGTCTAC
22._RUQ_1569
____CCGGGG_TTCCCGGTCTAC
23._RUQ_1564
____CCGGGG_TTCCCGGTCTAC
24._RUQ_32
CTAAGGCTCCGGGGAATTCCCGGTCTAC
25._PA_56_[PER]
CTAAGGCTCCGGGGAATTCCCGGTCTAC
26._PA_41_[PER]
CTAAGGCCCCGG-AATTCCCGGTCTAC
27._RUQ_1531
____CCGGGG_TTCCCGTTCCAC
28._MO_9
CTAACGCTCCGGGGAATTCCGGGTCTCC
29._MO_9
CTAACGCTCCGGGGAATTCCGGGTCTCC
30._MO_9
CTAACGCTCCGGGGAATTCCGGGTCTCC
31._MO_9
CTAACGCTCCGGGGAATTCCGGGTCTCC
32._GC-05-071-2-22
CTAACGCTCCGGGGAATTCCGGGTCTCC
33._GC-05-071-2-22
CTAACGCTCCGGGGAATTCCGGGTCTCC
34._GC-05-119-3-21
CTAACGCTCCGGGGAATTCCGGGTCTCC
35._GC-05-119-3-21
CTAACGCTCCGGGGAATTCCGGGTCTCC
36._PA_56_[PER]
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
37._PA_56_[PER]
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
38._PA_56_[PER]
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
39._PA_56_[PER]
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
40._NA
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
41._NA
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
42._NA
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
43._NA
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
44._MO_9
CTAACGCTCCGGGGAATTCCGGGTCTCC
45._GC-05-119-3-21
CTAACGCTCCGGGGAATTCCGGGTCTCC
46._PA_56_[PER]
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
47._NA
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
 293031323334353637383940  
_Input profile
AAGGAACCAGCCAACCGTACAAGGX_XX_X
1._PA_72_[PER]
AAGGAACCAGCCAACCGTACAAGGX_XX_X
2._PA_72_[PER]
AAGGAACCAGCCAACCGTACAAGGX_XX_X
3._PA_72_[PER]
AAGGAACCAGCCAACCGTACAAGGX_XX_X
4._PA_72_[PER]
AAGGAACCAGCCAACCGTACAAGGX_XX_X
5._PA_72_[PER]
AAGGAACCAGCCAACCGTACAAGGX_XX_X
6._PA_72_[PER]
AAGGAACCAGCCAACCGTACAAGGX_XX_X
7._PA_72_[PER]
AAGGAACCAGCCAACCGTACAAGGX_XX_X
8._PA_72_[PER]
AAGGAACCAGCCAACCGTACAAGGX_XX_X
9._PA_72_[PER]
AAGGAACCAGCCAACCGTACAAGGX_XX_X
10._GC-08-051-1-62
AAGGAACCAGCCAACCGTACAAGGX_XX_X
11._GC-08-051-1-62
AAGGAACCAGCCAACCGTACAAGGX_XX_X
12._GC-08-051-1-62
AAGGAACCAGCCAACCGTACAAGGX_XX_X
13._GC-08-051-1-62
AAGGAACCAGCCAACCGTACAAGGX_XX_X
14._GC-08-051-1-62
AAGGAACCAGCCAACCGTACAAGGX_XX_X
15._GC-08-051-1-62
AAGGAACCAGCCAACCGTACAAGGX_XX_X
16._GC-08-051-1-62
AAGGAACCAGCCAACCGTACAAGGX_XX_X
17._GC-08-051-1-62
AAGGAACCAGCCAACCGTACAAGGX_XX_X
18._GC-08-051-1-62
AAGGAACCAGCCAACCGTACAAGGX_XX_X
19._GC-08-051-1-62
AAGGAACCAGCCAACCGTACAAGGX_XX_X
20._PA_72_[PER]
AAGGAACCAGCCACCCGTACAAGGX_XX_X
21._PA_72_[PER]
AAGGAACCAG-ACCCGTACAAGGX_XX_X
22._RUQ_1569
AA_AACCAGCCAACCGGAC__X_XX_X
23._RUQ_1564
AA_AACCAGCCAACCGGAC__X_XX_X
24._RUQ_32
AAGGAACCAGCCACCCGGCCAAGGX_XX_X
25._PA_56_[PER]
AAGGAACCAGCCACCCGGCCAAGGX_XX_X
26._PA_41_[PER]
AGGGAACCAG-ACCCGTACAAGGX_XX_X
27._RUQ_1531
AA_AACCAACCAACCGGAC__X_XX_X
28._MO_9
AAGGAACCAACCAACCGTACAAGGX_XX_X
29._MO_9
AAGGAACCAACCAACCGTACAAGGX_XX_X
30._MO_9
AAGGAACCAACCAACCGTACAAGGX_XX_X
31._MO_9
AAGGAACCAACCAACCGTACAAGGX_XX_X
32._GC-05-071-2-22
AAGGAACCAACCAACCGTACAAGGX_XX_X
33._GC-05-071-2-22
AAGGAACCAACCAACCGTACAAGGX_XX_X
34._GC-05-119-3-21
AAGGAACCAACCAACCGTACAAGGX_XX_X
35._GC-05-119-3-21
AAGGAACCAACCAACCGTACAAGGX_XX_X
36._PA_56_[PER]
AAGGAACCAGCCAACCGGCCAAGGX_XX_X
37._PA_56_[PER]
AAGGAACCAGCCAACCGGCCAAGGX_XX_X
38._PA_56_[PER]
AAGGAACCAGCCAACCGGCCAAGGX_XX_X
39._PA_56_[PER]
AAGGAACCAGCCAACCGGCCAAGGX_XX_X
40._NA
AAGGAACCAGCCAACCGGCCAAGGX_XX_X
41._NA
AAGGAACCAGCCAACCGGCCAAGGX_XX_X
42._NA
AAGGAACCAGCCAACCGGCCAAGGX_XX_X
43._NA
AAGGAACCAGCCAACCGGCCAAGGX_XX_X
44._MO_9
AAGGAACCAACC_CCGTACAAGGX_XX_X
45._GC-05-119-3-21
AAGGAACCAACC_CCGTACAAGGX_XX_X
46._PA_56_[PER]
AAGG_CCAGCCAACCGGCCAAGGX_XX_X
47._NA
AAGG_CCAGCCAACCGGCCAAGGX_XX_X

Input profile: PA_72_[PER]

 
Mars Center for Cocoa Science, Brazil
Location: 8162 6
 Dapeng Zhang, 2016

1._PA_72_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

2._PA_72_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 3
 Dapeng Zhang, 2016

3._PA_72_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 5
 Dapeng Zhang, 2016

4._PA_72_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 8
 Dapeng Zhang, 2016

5._PA_72_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 9
 Dapeng Zhang, 2016

6._PA_72_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 10
 Dapeng Zhang, 2016

7._PA_72_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 1 > FP
 Dapeng Zhang, 2016

8._PA_72_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 4 > FP
 Dapeng Zhang, 2016

9._PA_72_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 7 > FP
 Dapeng Zhang, 2016

10._PA_72_[PER] GC-08-051-1-62

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

11._PA_72_[PER] GC-08-051-1-62

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

12._PA_72_[PER] GC-08-051-1-62

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

13._PA_72_[PER] GC-08-051-1-62

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

14._PA_72_[PER] GC-08-051-1-62

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

15._PA_72_[PER] GC-08-051-1-62

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

16._PA_72_[PER] GC-08-051-1-62

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

17._PA_72_[PER] GC-08-051-1-62

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

18._PA_72_[PER] GC-08-051-1-62

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

19._PA_72_[PER] GC-08-051-1-62

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

20._PA_72_[PER]

98.8 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 633
 Dapeng Zhang, 2016

21._PA_72_[PER]

98.7 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 633
 Dapeng Zhang, 2014

22._CRUZ_7_/14 RUQ_1569

93.8 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

23._PA_71_[PER] RUQ_1564

93.8 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

24._PA_56_[PER] RUQ_32

92.5 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

25._PA_56_[PER]

92.5 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 238
 Dapeng Zhang, 2016

26._PA_41_[PER]

92.1 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 667
 Dapeng Zhang, 2014

27._PA_156_[PER] RUQ_1531

91.7 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

28._MO_9

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 4 > FP
 Dapeng Zhang, 2016

29._MO_9

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 2
 Dapeng Zhang, 2016

30._MO_9

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 1 > FP
 Dapeng Zhang, 2016

31._MO_9

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 5
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

32._MO_9 GC-05-071-2-22

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

33._MO_9 GC-05-071-2-22

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

34._MO_9 GC-05-119-3-21

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

35._MO_9 GC-05-119-3-21

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

36._PA_56_[PER]

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 2
 Dapeng Zhang, 2016

37._PA_56_[PER]

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 3
 Dapeng Zhang, 2016

38._PA_56_[PER]

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 4
 Dapeng Zhang, 2016

39._PA_56_[PER]

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 6
 Dapeng Zhang, 2016

40._PA_56_[PER] NA

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

41._PA_56_[PER] NA

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

42._PA_56_[PER] NA

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: Dead
 Mars, 2018

43._PA_56_[PER] NA

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: Dead
 Mars, 2018

44._MO_9

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 3 > FP
 Dapeng Zhang, 2016

45._MO_9 GC-05-119-3-21

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

46._PA_56_[PER]

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

47._PA_56_[PER] NA

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25