SNP Profiles matching PA 72 [PER]

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 Key

 1234567891011121314
_Input profile
CTAGGGCTTTACCCTTCCCCAAGGCCAG
1._PA_72_[PER]
CTAGGGCTTTACCCTTCCCCAAGGCCAG
2._PA_72_[PER]
CTAGGGCTTTACCCTTCCCCAAGGCCAG
3._PA_72_[PER]
CTAGGGCTTTACCCTTCCCCAAGGCCAG
4._PA_72_[PER]
CTAGGGCTTTACCCTTCCCCAAGGCCAG
5._PA_72_[PER]
CTAGGGCTTTACCCTTCCCCAAGGCCAG
6._PA_72_[PER]
CTAGGGCTTTACCCTTCCCCAAGGCCAG
7._PA_72_[PER]
CTAGGGCTTTACCCTTCCCCAAGGCCAG
8._PA_72_[PER]
CTAGGGCTTTACCCTTCCCCAAGGCCAG
9._PA_72_[PER]
CTAGGGCTTTACCCTTCCCCAAGGCCAG
10._PA_72_[PER]
CTAGGGCTTTACCCTTCCCCAAGGCCAG
11._PA_72_[PER]
CTAGGGCTTTACCCTTCCCCAAGGCCAG
12._GC-08-051-1-62
CTAGGGCTTTACCCTTCCCCAAGGCCAG
13._GC-08-051-1-62
CTAGGGCTTTACCCTTCCCCAAGGCCAG
14._GC-08-051-1-62
CTAGGGCTTTACCCTTCCCCAAGGCCAG
15._GC-08-051-1-62
CTAGGGCTTTACCCTTCCCCAAGGCCAG
16._GC-08-051-1-62
CTAGGGCTTTACCCTTCCCCAAGGCCAG
17._GC-08-051-1-62
CTAGGGCTTTACCCTTCCCCAAGGCCAG
18._GC-08-051-1-62
CTAGGGCTTTACCCTTCCCCAAGGCCAG
19._GC-08-051-1-62
CTAGGGCTTTACCCTTCCCCAAGGCCAG
20._GC-08-051-1-62
CTAGGGCTTTACCCTTCCCCAAGGCCAG
21._GC-08-051-1-62
CTAGGGCTTTACCCTTCCCCAAGGCCAG
22._RUQ_32
CCGGCGCTTTACCCTTCCCCAAGGCCAG
23._PA_56_[PER]
CCGGCGCTTTACCCTTCCCCAAGGCCAG
24._PA_41_[PER]
CCAGGGCCTTACCTTTCCCCAAGGCCAG
25._RUQ_1569
_AGCGCC___TT____CCAG
26._RUQ_32
_GGCGCT___TT____CCAG
27._RUQ_1564
_AGCGCC___TT____CCAG
28._RUQ_1092
_GGGGCT___TT____CCAG
29._MO_9
CCGGCGCTTTACCCTTCCCCAAGGCCAG
30._GC-05-119-3-21
CCGGCGCTTTACCCTTCCCCAAGGCCAG
31._MO_9
CCGGCGCTTTACCCTTCCCCAAGGCCAG
32._PA_32_[PER]
CCAGGGCTTTACCTTTCCCCAAAGCCAA
33._MO_9
CCGGCGCTTTACCCTTCCCCAAGGCCAG
34._MO_9
CCGGCGCTTTACCCTTCCCCAAGGCCAG
35._MO_9
CCGGCGCTTTACCCTTCCCCAAGGCCAG
36._MO_9
CCGGCGCTTTACCCTTCCCCAAGGCCAG
37._GC-05-071-2-22
CCGGCGCTTTACCCTTCCCCAAGGCCAG
38._GC-05-071-2-22
CCGGCGCTTTACCCTTCCCCAAGGCCAG
39._GC-05-119-3-21
CCGGCGCTTTACCCTTCCCCAAGGCCAG
40._GC-05-119-3-21
CCGGCGCTTTACCCTTCCCCAAGGCCAG
41._PA_56_[PER]
CCGGCGCTTTACCCTTCCCCAAGGCCAG
42._PA_56_[PER]
CCGGCGCTTTACCCTTCCCCAAGGCCAG
43._PA_56_[PER]
CCGGCGCTTTACCCTTCCCCAAGGCCAG
44._PA_56_[PER]
CCGGCGCTTTACCCTTCCCCAAGGCCAG
45._NA
CCGGCGCTTTACCCTTCCCCAAGGCCAG
46._NA
CCGGCGCTTTACCCTTCCCCAAGGCCAG
47._NA
CCGGCGCTTTACCCTTCCCCAAGGCCAG
48._NA
CCGGCGCTTTACCCTTCCCCAAGGCCAG
 1516171819202122232425262728
_Input profile
CTAAGGCTCCGGGGAATTCCCGGTCTAC
1._PA_72_[PER]
CTAAGGCTCCGG-AATTCCCGGTCTAC
2._PA_72_[PER]
CTAAGGCTCCGGGGAATTCCCGGTCTAC
3._PA_72_[PER]
CTAAGGCTCCGGGGAATTCCCGGTCTAC
4._PA_72_[PER]
CTAAGGCTCCGGGGAATTCCCGGTCTAC
5._PA_72_[PER]
CTAAGGCTCCGGGGAATTCCCGGTCTAC
6._PA_72_[PER]
CTAAGGCTCCGGGGAATTCCCGGTCTAC
7._PA_72_[PER]
CTAAGGCTCCGGGGAATTCCCGGTCTAC
8._PA_72_[PER]
CTAAGGCTCCGGGGAATTCCCGGTCTAC
9._PA_72_[PER]
CTAAGGCTCCGGGGAATTCCCGGTCTAC
10._PA_72_[PER]
CTAAGGCTCCGGGGAATTCCCGGTCTAC
11._PA_72_[PER]
CTAAGGCTCCGGGGAATTCCCGGTCTAC
12._GC-08-051-1-62
CTAAGGCTCCGGGGAATTCCCGGTCTAC
13._GC-08-051-1-62
CTAAGGCTCCGGGGAATTCCCGGTCTAC
14._GC-08-051-1-62
CTAAGGCTCCGGGGAATTCCCGGTCTAC
15._GC-08-051-1-62
CTAAGGCTCCGGGGAATTCCCGGTCTAC
16._GC-08-051-1-62
CTAAGGCTCCGGGGAATTCCCGGTCTAC
17._GC-08-051-1-62
CTAAGGCTCCGGGGAATTCCCGGTCTAC
18._GC-08-051-1-62
CTAAGGCTCCGGGGAATTCCCGGTCTAC
19._GC-08-051-1-62
CTAAGGCTCCGGGGAATTCCCGGTCTAC
20._GC-08-051-1-62
CTAAGGCTCCGGGGAATTCCCGGTCTAC
21._GC-08-051-1-62
CTAAGGCTCCGGGGAATTCCCGGTCTAC
22._RUQ_32
CTAAGGCTCCGGGGAATTCCCGGTCTAC
23._PA_56_[PER]
CTAAGGCTCCGGGGAATTCCCGGTCTAC
24._PA_41_[PER]
CTAAGGCCCCGG-AATTCCCGGTCTAC
25._RUQ_1569
____CCGGGG_TTCCCGGTCTAC
26._RUQ_32
____CCGGGG_TTCCCGGTCTAC
27._RUQ_1564
____CCGGGG_TTCCCGGTCTAC
28._RUQ_1092
____CCGGGG_TTCCCGGGCTAC
29._MO_9
CTAACGCTCCGGGGAATTCCGGGTCTCC
30._GC-05-119-3-21
CTAACGCTCCGGGGAATTCCGGGTCTCC
31._MO_9
CTAACGCTCCGGGGAATTCCGGGTCTCC
32._PA_32_[PER]
CTAACGCCCCGG-AATTCCCGGTCTAC
33._MO_9
CTAACGCTCCGGGGAATTCCGGGTCTCC
34._MO_9
CTAACGCTCCGGGGAATTCCGGGTCTCC
35._MO_9
CTAACGCTCCGGGGAATTCCGGGTCTCC
36._MO_9
CTAACGCTCCGGGGAATTCCGGGTCTCC
37._GC-05-071-2-22
CTAACGCTCCGGGGAATTCCGGGTCTCC
38._GC-05-071-2-22
CTAACGCTCCGGGGAATTCCGGGTCTCC
39._GC-05-119-3-21
CTAACGCTCCGGGGAATTCCGGGTCTCC
40._GC-05-119-3-21
CTAACGCTCCGGGGAATTCCGGGTCTCC
41._PA_56_[PER]
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
42._PA_56_[PER]
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
43._PA_56_[PER]
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
44._PA_56_[PER]
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
45._NA
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
46._NA
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
47._NA
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
48._NA
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
 293031323334353637383940  
_Input profile
AAGGAACCAGCCACCCGTACAAGGX_XX_X
1._PA_72_[PER]
AAGGAACCAG-ACCCGTACAAGGX_XX_X
2._PA_72_[PER]
AAGGAACCAGCCAACCGTACAAGGX_XX_X
3._PA_72_[PER]
AAGGAACCAGCCAACCGTACAAGGX_XX_X
4._PA_72_[PER]
AAGGAACCAGCCAACCGTACAAGGX_XX_X
5._PA_72_[PER]
AAGGAACCAGCCAACCGTACAAGGX_XX_X
6._PA_72_[PER]
AAGGAACCAGCCAACCGTACAAGGX_XX_X
7._PA_72_[PER]
AAGGAACCAGCCAACCGTACAAGGX_XX_X
8._PA_72_[PER]
AAGGAACCAGCCAACCGTACAAGGX_XX_X
9._PA_72_[PER]
AAGGAACCAGCCAACCGTACAAGGX_XX_X
10._PA_72_[PER]
AAGGAACCAGCCAACCGTACAAGGX_XX_X
11._PA_72_[PER]
AAGGAACCAGCCAACCGTACAAGGX_XX_X
12._GC-08-051-1-62
AAGGAACCAGCCAACCGTACAAGGX_XX_X
13._GC-08-051-1-62
AAGGAACCAGCCAACCGTACAAGGX_XX_X
14._GC-08-051-1-62
AAGGAACCAGCCAACCGTACAAGGX_XX_X
15._GC-08-051-1-62
AAGGAACCAGCCAACCGTACAAGGX_XX_X
16._GC-08-051-1-62
AAGGAACCAGCCAACCGTACAAGGX_XX_X
17._GC-08-051-1-62
AAGGAACCAGCCAACCGTACAAGGX_XX_X
18._GC-08-051-1-62
AAGGAACCAGCCAACCGTACAAGGX_XX_X
19._GC-08-051-1-62
AAGGAACCAGCCAACCGTACAAGGX_XX_X
20._GC-08-051-1-62
AAGGAACCAGCCAACCGTACAAGGX_XX_X
21._GC-08-051-1-62
AAGGAACCAGCCAACCGTACAAGGX_XX_X
22._RUQ_32
AAGGAACCAGCCACCCGGCCAAGGX_XX_X
23._PA_56_[PER]
AAGGAACCAGCCACCCGGCCAAGGX_XX_X
24._PA_41_[PER]
AGGGAACCAG-ACCCGTACAAGGX_XX_X
25._RUQ_1569
AA_AACCAGCCAACCGGAC__X_XX_X
26._RUQ_32
AA_AACCAGCCACCCGGCC__X_XX_X
27._RUQ_1564
AA_AACCAGCCAACCGGAC__X_XX_X
28._RUQ_1092
AA_AACCAGCCACCTGGAC__X_XX_X
29._MO_9
AAGGAACCAACC_CCGTACAAGGX_XX_X
30._GC-05-119-3-21
AAGGAACCAACC_CCGTACAAGGX_XX_X
31._MO_9
AAGGAACCAA_ACCCGTACAAGGX_XX_X
32._PA_32_[PER]
AAGGAACCGG-ACCCGTACAAGGX_XX_X
33._MO_9
AAGGAACCAACCAACCGTACAAGGX_XX_X
34._MO_9
AAGGAACCAACCAACCGTACAAGGX_XX_X
35._MO_9
AAGGAACCAACCAACCGTACAAGGX_XX_X
36._MO_9
AAGGAACCAACCAACCGTACAAGGX_XX_X
37._GC-05-071-2-22
AAGGAACCAACCAACCGTACAAGGX_XX_X
38._GC-05-071-2-22
AAGGAACCAACCAACCGTACAAGGX_XX_X
39._GC-05-119-3-21
AAGGAACCAACCAACCGTACAAGGX_XX_X
40._GC-05-119-3-21
AAGGAACCAACCAACCGTACAAGGX_XX_X
41._PA_56_[PER]
AAGGAACCAGCCAACCGGCCAAGGX_XX_X
42._PA_56_[PER]
AAGGAACCAGCCAACCGGCCAAGGX_XX_X
43._PA_56_[PER]
AAGGAACCAGCCAACCGGCCAAGGX_XX_X
44._PA_56_[PER]
AAGGAACCAGCCAACCGGCCAAGGX_XX_X
45._NA
AAGGAACCAGCCAACCGGCCAAGGX_XX_X
46._NA
AAGGAACCAGCCAACCGGCCAAGGX_XX_X
47._NA
AAGGAACCAGCCAACCGGCCAAGGX_XX_X
48._NA
AAGGAACCAGCCAACCGGCCAAGGX_XX_X

Input profile: PA_72_[PER]

 
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 633
 Dapeng Zhang, 2016

1._PA_72_[PER]

identical
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 633
 Dapeng Zhang, 2014

2._PA_72_[PER]

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

3._PA_72_[PER]

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 3
 Dapeng Zhang, 2016

4._PA_72_[PER]

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 5
 Dapeng Zhang, 2016

5._PA_72_[PER]

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 6
 Dapeng Zhang, 2016

6._PA_72_[PER]

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 8
 Dapeng Zhang, 2016

7._PA_72_[PER]

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 9
 Dapeng Zhang, 2016

8._PA_72_[PER]

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 10
 Dapeng Zhang, 2016

9._PA_72_[PER]

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 1 > FP
 Dapeng Zhang, 2016

10._PA_72_[PER]

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 4 > FP
 Dapeng Zhang, 2016

11._PA_72_[PER]

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 7 > FP
 Dapeng Zhang, 2016

12._PA_72_[PER] GC-08-051-1-62

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

13._PA_72_[PER] GC-08-051-1-62

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

14._PA_72_[PER] GC-08-051-1-62

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

15._PA_72_[PER] GC-08-051-1-62

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

16._PA_72_[PER] GC-08-051-1-62

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

17._PA_72_[PER] GC-08-051-1-62

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

18._PA_72_[PER] GC-08-051-1-62

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

19._PA_72_[PER] GC-08-051-1-62

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

20._PA_72_[PER] GC-08-051-1-62

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

21._PA_72_[PER] GC-08-051-1-62

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

22._PA_56_[PER] RUQ_32

93.8 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

23._PA_56_[PER]

93.8 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 238
 Dapeng Zhang, 2016

24._PA_41_[PER]

93.4 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 667
 Dapeng Zhang, 2014

25._CRUZ_7_/14 RUQ_1569

91.7 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

26._PA_56_[PER] RUQ_32

91.7 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

27._PA_71_[PER] RUQ_1564

91.7 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

28._SLA_16 RUQ_1092

91.7 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

29._MO_9

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 3 > FP
 Dapeng Zhang, 2016

30._MO_9 GC-05-119-3-21

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

31._MO_9

91 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D835
 Dapeng Zhang, 2016

32._PA_32_[PER]

90.8 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 253
 Dapeng Zhang, 2014

33._MO_9

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 4 > FP
 Dapeng Zhang, 2016

34._MO_9

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 2
 Dapeng Zhang, 2016

35._MO_9

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 1 > FP
 Dapeng Zhang, 2016

36._MO_9

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 5
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

37._MO_9 GC-05-071-2-22

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

38._MO_9 GC-05-071-2-22

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

39._MO_9 GC-05-119-3-21

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

40._MO_9 GC-05-119-3-21

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

41._PA_56_[PER]

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 2
 Dapeng Zhang, 2016

42._PA_56_[PER]

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 3
 Dapeng Zhang, 2016

43._PA_56_[PER]

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 4
 Dapeng Zhang, 2016

44._PA_56_[PER]

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 6
 Dapeng Zhang, 2016

45._PA_56_[PER] NA

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

46._PA_56_[PER] NA

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

47._PA_56_[PER] NA

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: Dead
 Mars, 2018

48._PA_56_[PER] NA

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: Dead
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25