SNP Profiles matching PA 70 [PER]

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 Key

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_Input profile
TTAAGGCTTTAACCTTCTTTAAAATTAG
1._ICS_1
TTAAGGCTTTAACCTTCTTTAAAATTAG
2._ICS_1
TTAAGGCTTTAACCTTCTTTAAAATTAG
3._ICS_1
TTAAGGCTTTAACCTTCTTTAAAATTAG
4._ICS_1
TTAAGGCTTTAACCTTCTTTAAAATTAG
5._ICS_1
TTAAGGCTTTAACCTTCTTTAAAATTAG
6._NA
TTAAGGCTTTAACCTTCTTTAAAATTAG
7._NA
TTAAGGCTTTAACCTTCTTTAAAATTAG
8._NA
TTAAGGCTTTAACCTTCTTTAAAATTAG
9._NA
TTAAGGCTTTAACCTTCTTTAAAATTAG
10._NA
TTAAGGCTTTAACCTTCTTTAAAATTAG
11._GC-04-053-3-17
TTAAGGCTTTAACCTTCTTTAAAATTAG
12._ICS_1
TTAAGGCTTTAACCTTCTTTAAAATTAG
13._NA
TTAAGGCTTTAACCTTCTTTAAAATTAG
14._ICS_1
TTAAGGCTTTAACCTTCTTTAAAATTAG
15._MARPER_45
TTAAGGCT-AACC-CT-AAAA-AG
16._RUQ_847
TTAGGGCTTTAACCTTCTTTAAAATTAG
17._RUQ_847
_AAGGCT___TT____TTAG
18._RUQ_817
_AAGGCT___TT____TTAG
19._RUQ_847
TTAGGGCTTTAACCTTCTCTAAAATTAG
20._MARPER_34
TTAAGGTT-AACC-CT-AAAA-AG
21._MARPER_55
TTAAGGCT-AACC-CT-AAAA-AG
22._OC_61_[VEN]
TTAAGGCTTTAACCTTCTTTAAAATTAG
23._OC_61_[VEN]
TTAAGGCTTTAACCTTCTTTAAAATTAG
24._GC-05-039-1-39
TTAAGGCTTTAACCTTCTTTAAAATTAG
25._GC-05-039-1-39
TTAAGGCTTTAACCTTCTTTAAAATTAG
 1516171819202122232425262728
_Input profile
TTAAGGTTCCCGGTGGTTACCCTTTTCC
1._ICS_1
TTAAGGTTCCCGGTGGTTACCCTTTTCC
2._ICS_1
TTAAGGTTCCCGGTGGTTACCCTTTTCC
3._ICS_1
TTAAGGTTCCCGGTGGTTACCCTTTTCC
4._ICS_1
TTAAGGTTCCCGGTGGTTACCCTTTTCC
5._ICS_1
TTAAGGTTCCCGGTGGTTACCCTTTTCC
6._NA
TTAAGGTTCCCGGTGGTTACCCTTTTCC
7._NA
TTAAGGTTCCCGGTGGTTACCCTTTTCC
8._NA
TTAAGGTTCCCGGTGGTTACCCTTTTCC
9._NA
TTAAGGTTCCCGGTGGTTACCCTTTTCC
10._NA
TTAAGGTTCCCGGTGGTTACCCTTTTCC
11._GC-04-053-3-17
TTAAGGTTCCCGGTGGTTACCCTTTTCC
12._ICS_1
TTAAGGTTCCCGGTGGTTAC_TTTTCC
13._NA
TTAAGGTTCCCGGTGGTTAC_TTTTCC
14._ICS_1
TTAAGGTTCC_GTGGTTACCCTTTTCC
15._MARPER_45
TTAAGG-CC-GTGGTT-CC-TTCC
16._RUQ_847
TTAAGGTTCCCGGTGGTTACCCTTTTCC
17._RUQ_847
____CCCGGT_TTAACCTTTTCC
18._RUQ_817
____CCCGGT_TTAACCTTTTCC
19._RUQ_847
TTAAGGTTCCCGGTGGCTACCCTTCTCC
20._MARPER_34
TTAAGG-CC-GTGGCT-CC-CTCC
21._MARPER_55
TTAAGG-CC-GTGGCT-CC-CTCC
22._OC_61_[VEN]
TTAAGGTTCCCGGGGGTTCCCCTTTTCC
23._OC_61_[VEN]
TTAAGGTTCCCGGGGGTTCCCCTTTTCC
24._GC-05-039-1-39
TTAAGGTTCCCGGGGGTTCCCCTTTTCC
25._GC-05-039-1-39
TTAAGGTTCCCGGGGGTTCCCCTTTTCC
 293031323334353637383940  
_Input profile
AGGGATCTAGCGAACCGTAAATGGX_XX_X
1._ICS_1
AGGGATCTAGCGAACCGTAAATGGX_XX_X
2._ICS_1
AGGGATCTAGCGAACCGTAAATGGX_XX_X
3._ICS_1
AGGGATCTAGCGAACCGTAAATGGX_XX_X
4._ICS_1
AGGGATCTAGCGAACCGTAAATGGX_XX_X
5._ICS_1
AGGGATCTAGCGAACCGTAAATGGX_XX_X
6._NA
AGGGATCTAGCGAACCGTAAATGGX_XX_X
7._NA
AGGGATCTAGCGAACCGTAAATGGX_XX_X
8._NA
AGGGATCTAGCGAACCGTAAATGGX_XX_X
9._NA
AGGGATCTAGCGAACCGTAAATGGX_XX_X
10._NA
AGGGATCTAGCGAACCGTAAATGGX_XX_X
11._GC-04-053-3-17
AGGGATCTAGCGAACCGTAAATGGX_XX_X
12._ICS_1
AGGGATCTAGCGAACCGTAAATGGX_XX_X
13._NA
AGGGATCTAGCGAACCGTAAATGGX_XX_X
14._ICS_1
_GGATCTAGCGAACCGTAAATGGX_XX_X
15._MARPER_45
AGGG-CTAG---GT-AT-X_XX_X
16._RUQ_847
AGGGATCTAGCGAACCGTAAATGGX_XX_X
17._RUQ_847
AG_ATCTAGCGAACCGTAA__X_XX_X
18._RUQ_817
AG_ATCTAGCGAACCGTAA__X_XX_X
19._RUQ_847
AGGGATCTAGCGAACCGTAAATGGX_XX_X
20._MARPER_34
AGGG-TTAG---GT-AA-X_XX_X
21._MARPER_55
AGGG-CCAA---GG-AT-X_XX_X
22._OC_61_[VEN]
AAGGAACCAGCGAACCTTACTTGGX_XX_X
23._OC_61_[VEN]
AAGGAACCAGCGAACCTTACTTGGX_XX_X
24._GC-05-039-1-39
AAGGAACCAGCGAACCTTACTTGGX_XX_X
25._GC-05-039-1-39
AAGGAACCAGCGAACCTTACTTGGX_XX_X

Input profile: PA_70_[PER]

 
Mars Center for Cocoa Science, Brazil
Location: 4317 2 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

1._ICS_1

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 8
 Dapeng Zhang, 2016

2._ICS_1

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 6
 Dapeng Zhang, 2016

3._ICS_1

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 5
 Dapeng Zhang, 2016

4._ICS_1

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 3
 Dapeng Zhang, 2016

5._ICS_1

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

6._ICS_1 NA

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

7._ICS_1 NA

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

8._ICS_1 NA

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

9._ICS_1 NA

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

10._ICS_1 NA

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

11._PA_70_[PER] GC-04-053-3-17

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1 (roxo)
 Mars, 2018

12._ICS_1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 7
 Dapeng Zhang, 2016

13._ICS_1 NA

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

14._ICS_1

identical
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block4
 Dapeng Zhang, 2016

15._MARPER_45

identical
26 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 251A
 Dapeng Zhang, 2014

16._ICS_1 RUQ_847

98.8 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

17._ICS_1 RUQ_847

97.9 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

18._ICS_5 RUQ_817

97.9 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

19._ICS_1 RUQ_847

95 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

20._MARPER_34

90.4 %
26 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 559
 Dapeng Zhang, 2014

21._MARPER_55

90.4 %
26 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER C 249
 Dapeng Zhang, 2014

22._OC_61_[VEN]

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5139 1 > FP
 Dapeng Zhang, 2016

23._OC_61_[VEN]

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5139 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

24._OC_61_[VEN] GC-05-039-1-39

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

25._OC_61_[VEN] GC-05-039-1-39

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25