SNP Profiles matching PA7 [PER]

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_Input profile	CT	AG	CG	CT	TT	CC	CT	TT	CC	CC	AA	GG	CC	AG
1._PA_7_[PER]	CT	AG	CG	CT	TT	CC	CT	TT	CC	CC	AA	GG	CC	AG
2._PA_7_[PER]	CT	AG	CG	CT	TT	CC	CT	TT	CC	CC	AA	GG	CC	AG
3._RUQ_113	__	AG	CG	CT	__	__	__	TT	__	__	__	__	CC	AG
4._PA_7_[PER]	CT	AG	CG	CT	TT	CC	CT	TT	CC	CC	AA	GG	CC	AG
5._PA_7_[PER]	CT	AG	CG	CT	TT	CC	CT	TT	CC	CC	AA	GG	CC	AG
6._PA_7_[PER]	CT	AG	CG	CT	TT	CC	CT	TT	CC	CC	AA	GG	CC	AG
7._PA_7_[PER]	CT	AG	CG	CT	TT	CC	CT	TT	CC	CC	AA	GG	CC	AG
8._PA_7_[PER]	CT	AG	CG	CT	TT	CC	CT	TT	CC	CC	AA	GG	CC	AG
9._GC-04-030-2-12	CT	AG	CG	CT	TT	CC	CT	TT	CC	CC	AA	GG	CC	AG
10._GC-04-030-2-12	CT	AG	CG	CT	TT	CC	CT	TT	CC	CC	AA	GG	CC	AG
11._GC-04-030-2-12	CT	AG	CG	CT	TT	CC	CT	TT	CC	CC	AA	GG	CC	AG
12._GC-04-030-2-12	CT	AG	CG	CT	TT	CC	CT	TT	CC	CC	AA	GG	CC	AG
13._GC-04-030-2-12	CT	AG	CG	CT	TT	CC	CT	TT	CC	CC	AA	GG	CC	AG
14._RUQ_113	CT	AG	CG	CT	TT	CC	CT	TT	CC	CC	AA	GG	CC	AG
15._PA_200_[PER]	CT	AG	CG	CT	TT	CC	CT	TT	CC	CC	AA	GG	CC	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CC	AA	CC	CC	CC	GG	GG	AG	TT	CC	GG	GT	CC	AA
1._PA_7_[PER]	CC	AA	CC	CC	CC	GG	GG	AG	TT	CC	GG	GT	CC	AA
2._PA_7_[PER]	CC	AA	CC	CC	CC	GG	GG	AG	TT	CC	GG	GT	CC	AA
3._RUQ_113	__	__	__	__	CC	GG	GG	__	TT	CC	GG	GT	CC	AA
4._PA_7_[PER]	CC	AA	CC	CC	CC	GG	GG	AG	TT	CC	GG	GT	CC	AA
5._PA_7_[PER]	CC	AA	CC	CC	CC	GG	GG	AG	TT	CC	GG	GT	CC	AA
6._PA_7_[PER]	CC	AA	CC	CC	CC	GG	GG	AG	TT	CC	GG	GT	CC	AA
7._PA_7_[PER]	CC	AA	CC	CC	CC	GG	GG	AG	TT	CC	GG	GT	CC	AA
8._PA_7_[PER]	CC	AA	CC	CC	CC	GG	GG	AG	TT	CC	GG	GT	CC	AA
9._GC-04-030-2-12	CC	AA	CC	CC	CC	GG	GG	AG	TT	CC	GG	GT	CC	AA
10._GC-04-030-2-12	CC	AA	CC	CC	CC	GG	GG	AG	TT	CC	GG	GT	CC	AA
11._GC-04-030-2-12	CC	AA	CC	CC	CC	GG	GG	AG	TT	CC	GG	GT	CC	AA
12._GC-04-030-2-12	CC	AA	CC	CC	CC	GG	GG	AG	TT	CC	GG	GT	CC	AA
13._GC-04-030-2-12	CC	AA	CC	CC	CC	GG	GG	AG	TT	CC	GG	GT	CC	AA
14._RUQ_113	CC	AA	CC	CC	CC	GG	GG	AA	TT	CC	GG	GT	CC	AA
15._PA_200_[PER]	CT	AA	CC	CT	CC	GG	__	AA	CT	CC	CG	GT	CC	AA

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AA	GG	AA	CC	AG	CC	AC	CT	GG	AA	AT	GG	X_X	X_X
1._PA_7_[PER]	AA	GG	AA	CC	AG	CC	AC	CT	GG	AA	AT	GG	X_X	X_X
2._PA_7_[PER]	AA	GG	AA	CC	AG	CC	AC	CT	GG	AA	AT	GG	X_X	X_X
3._RUQ_113	AA	__	AA	CC	AG	CC	AC	CT	GG	AA	__	__	X_X	X_X
4._PA_7_[PER]	AA	GG	AA	CC	AG	CC	AA	CT	GG	AA	AT	GG	X_X	X_X
5._PA_7_[PER]	AA	GG	AA	CC	AG	CC	AA	CT	GG	AA	AT	GG	X_X	X_X
6._PA_7_[PER]	AA	GG	AA	CC	AG	CC	AA	CT	GG	AA	AT	GG	X_X	X_X
7._PA_7_[PER]	AA	GG	AA	CC	AG	CC	AA	CT	GG	AA	AT	GG	X_X	X_X
8._PA_7_[PER]	AA	GG	AA	CC	AG	CC	AA	CT	GG	AA	AT	GG	X_X	X_X
9._GC-04-030-2-12	AA	GG	AA	CC	AG	CC	AA	CT	GG	AA	AT	GG	X_X	X_X
10._GC-04-030-2-12	AA	GG	AA	CC	AG	CC	AA	CT	GG	AA	AT	GG	X_X	X_X
11._GC-04-030-2-12	AA	GG	AA	CC	AG	CC	AA	CT	GG	AA	AT	GG	X_X	X_X
12._GC-04-030-2-12	AA	GG	AA	CC	AG	CC	AA	CT	GG	AA	AT	GG	X_X	X_X
13._GC-04-030-2-12	AA	GG	AA	CC	AG	CC	AA	CT	GG	AA	AT	GG	X_X	X_X
14._RUQ_113	AA	GG	AA	CC	AG	CC	AC	CT	GG	AA	AT	GG	X_X	X_X
15._PA_200_[PER]	AA	GG	AA	CC	AG	__	AC	CT	GT	AC	AT	GG	X_X	X_X

Input profile: PA_7_[PER]

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Malaysian Cocoa Board (MCB), Malaysia

Location: Row 2 C0214 27

Dapeng Zhang, 2016

1._PA_7_[PER]

identical
40 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana

Location: P61 842

Dapeng Zhang, 2016

2._PA_7_[PER]

identical
40 shared markers

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Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia

Location: KW 185 I-033

Dapeng Zhang, 2016

3._PA_7_[PER] RUQ_113

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

4._PA_7_[PER]

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4212 8

Dapeng Zhang, 2016

5._PA_7_[PER]

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4212 1 > FP

Dapeng Zhang, 2016

6._PA_7_[PER]

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4212 2 > FP

Dapeng Zhang, 2016

7._PA_7_[PER]

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4212 3 > FP

Dapeng Zhang, 2016

8._PA_7_[PER]

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4212 7 > FP

Dapeng Zhang, 2016

9._PA_7_[PER] GC-04-030-2-12

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

10._PA_7_[PER] GC-04-030-2-12

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP4

11._PA_7_[PER] GC-04-030-2-12

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP3

12._PA_7_[PER] GC-04-030-2-12

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7 > FP2

13._PA_7_[PER] GC-04-030-2-12

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

14._PA_7_[PER] RUQ_113

98.8 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

15._PA_200_[PER]

90.8 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 710

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25