SNP Profiles matching PA 56 [PER]

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 Key

 1234567891011121314
_Input profile
CCGGCGCTTTACCCTTCCCCAAGGCCAG
1._PA_56_[PER]
CCGGCGCTTTACCCTTCCCCAAGGCCAG
2._PA_56_[PER]
CCGGCGCTTTACCCTTCCCCAAGGCCAG
3._PA_56_[PER]
CCGGCGCTTTACCCTTCCCCAAGGCCAG
4._PA_56_[PER]
CCGGCGCTTTACCCTTCCCCAAGGCCAG
5._NA
CCGGCGCTTTACCCTTCCCCAAGGCCAG
6._NA
CCGGCGCTTTACCCTTCCCCAAGGCCAG
7._NA
CCGGCGCTTTACCCTTCCCCAAGGCCAG
8._NA
CCGGCGCTTTACCCTTCCCCAAGGCCAG
9._NA
CCGGCGCTTTACCCTTCCCCAAGGCCAG
10._RUQ_32
_GGCGCT___TT____CCAG
11._RUQ_32
CCGGCGCTTTACCCTTCCCCAAGGCCAG
12._PA_56_[PER]
CCGGCGCTTTACCCTTCCCCAAGGCCAG
13._RUQ_1569
_AGCGCC___TT____CCAG
14._RUQ_37
_GGCGCT___TT____CCAA
15._RUQ_1564
_AGCGCC___TT____CCAG
16._RUQ_1436
_GGGGCC___TT____CCAG
17._RUQ_1621
_GGCCCT___TT____CCAG
18._PA_175_[PER]
CCGGCGCTTTACCCTTCCCCAAAGCCAA
19._PA_175_[PER]
CCGGCGCTTTACCCTTCCCCAAAGCCAA
20._PA_175_[PER]
CCGGCGCTTTACCCTTCCCCAAAGCCAA
21._PA_175_[PER]
CCGGCGCTTTACCCTTCCCCAAAGCCAA
22._PA_72_[PER]
CTAGGGCTTTACCCTTCCCCAAGGCCAG
23._PA_72_[PER]
CTAGGGCTTTACCCTTCCCCAAGGCCAG
24._PA_72_[PER]
CTAGGGCTTTACCCTTCCCCAAGGCCAG
25._PA_72_[PER]
CTAGGGCTTTACCCTTCCCCAAGGCCAG
26._PA_72_[PER]
CTAGGGCTTTACCCTTCCCCAAGGCCAG
27._PA_72_[PER]
CTAGGGCTTTACCCTTCCCCAAGGCCAG
28._PA_72_[PER]
CTAGGGCTTTACCCTTCCCCAAGGCCAG
29._PA_72_[PER]
CTAGGGCTTTACCCTTCCCCAAGGCCAG
30._PA_72_[PER]
CTAGGGCTTTACCCTTCCCCAAGGCCAG
31._PA_72_[PER]
CTAGGGCTTTACCCTTCCCCAAGGCCAG
32._NA
CCGGCGCTTTACCCTTCCCCAAAGCCAA
33._NA
CCGGCGCTTTACCCTTCCCCAAAGCCAA
34._NA
CCGGCGCTTTACCCTTCCCCAAAGCCAA
35._NA
CCGGCGCTTTACCCTTCCCCAAAGCCAA
36._GC-08-051-1-62
CTAGGGCTTTACCCTTCCCCAAGGCCAG
37._GC-08-051-1-62
CTAGGGCTTTACCCTTCCCCAAGGCCAG
38._GC-08-051-1-62
CTAGGGCTTTACCCTTCCCCAAGGCCAG
39._GC-08-051-1-62
CTAGGGCTTTACCCTTCCCCAAGGCCAG
40._GC-08-051-1-62
CTAGGGCTTTACCCTTCCCCAAGGCCAG
41._GC-08-051-1-62
CTAGGGCTTTACCCTTCCCCAAGGCCAG
42._GC-08-051-1-62
CTAGGGCTTTACCCTTCCCCAAGGCCAG
43._GC-08-051-1-62
CTAGGGCTTTACCCTTCCCCAAGGCCAG
44._GC-08-051-1-62
CTAGGGCTTTACCCTTCCCCAAGGCCAG
45._GC-08-051-1-62
CTAGGGCTTTACCCTTCCCCAAGGCCAG
 1516171819202122232425262728
_Input profile
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
1._PA_56_[PER]
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
2._PA_56_[PER]
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
3._PA_56_[PER]
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
4._PA_56_[PER]
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
5._NA
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
6._NA
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
7._NA
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
8._NA
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
9._NA
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
10._RUQ_32
____CCGGGG_TTCCCGGTCTAC
11._RUQ_32
CTAAGGCTCCGGGGAATTCCCGGTCTAC
12._PA_56_[PER]
CTAAGGCTCCGGGGAATTCCCGGTCTAC
13._RUQ_1569
____CCGGGG_TTCCCGGTCTAC
14._RUQ_37
____CCGGGG_TTACCGGTCTAC
15._RUQ_1564
____CCGGGG_TTCCCGGTCTAC
16._RUQ_1436
____CCGGGG_TTCCCGGTCCAC
17._RUQ_1621
____CCGGGG_TTCCCGGGCTAC
18._PA_175_[PER]
TTAACGCTCCGGGGGGTTACCGGTCTAC
19._PA_175_[PER]
TTAACGCTCCGGGGGGTTACCGGTCTAC
20._PA_175_[PER]
TTAACGCTCCGGGGGGTTACCGGTCTAC
21._PA_175_[PER]
TTAACGCTCCGGGGGGTTACCGGTCTAC
22._PA_72_[PER]
CTAAGGCTCCGGGGAATTCCCGGTCTAC
23._PA_72_[PER]
CTAAGGCTCCGGGGAATTCCCGGTCTAC
24._PA_72_[PER]
CTAAGGCTCCGGGGAATTCCCGGTCTAC
25._PA_72_[PER]
CTAAGGCTCCGGGGAATTCCCGGTCTAC
26._PA_72_[PER]
CTAAGGCTCCGGGGAATTCCCGGTCTAC
27._PA_72_[PER]
CTAAGGCTCCGGGGAATTCCCGGTCTAC
28._PA_72_[PER]
CTAAGGCTCCGGGGAATTCCCGGTCTAC
29._PA_72_[PER]
CTAAGGCTCCGGGGAATTCCCGGTCTAC
30._PA_72_[PER]
CTAAGGCTCCGGGGAATTCCCGGTCTAC
31._PA_72_[PER]
CTAAGGCTCCGGGGAATTCCCGGTCTAC
32._NA
TTAACGCTCCGGGGGGTTACCGGTCTAC
33._NA
TTAACGCTCCGGGGGGTTACCGGTCTAC
34._NA
TTAACGCTCCGGGGGGTTACCGGTCTAC
35._NA
TTAACGCTCCGGGGGGTTACCGGTCTAC
36._GC-08-051-1-62
CTAAGGCTCCGGGGAATTCCCGGTCTAC
37._GC-08-051-1-62
CTAAGGCTCCGGGGAATTCCCGGTCTAC
38._GC-08-051-1-62
CTAAGGCTCCGGGGAATTCCCGGTCTAC
39._GC-08-051-1-62
CTAAGGCTCCGGGGAATTCCCGGTCTAC
40._GC-08-051-1-62
CTAAGGCTCCGGGGAATTCCCGGTCTAC
41._GC-08-051-1-62
CTAAGGCTCCGGGGAATTCCCGGTCTAC
42._GC-08-051-1-62
CTAAGGCTCCGGGGAATTCCCGGTCTAC
43._GC-08-051-1-62
CTAAGGCTCCGGGGAATTCCCGGTCTAC
44._GC-08-051-1-62
CTAAGGCTCCGGGGAATTCCCGGTCTAC
45._GC-08-051-1-62
CTAAGGCTCCGGGGAATTCCCGGTCTAC
 2930313233343536373839   
_Input profile
AAGGCCAGCCAACCGGCCAAGGX_XX_XX_X
1._PA_56_[PER]
AAGGCCAGCCAACCGGCCAAGGX_XX_XX_X
2._PA_56_[PER]
AAGGCCAGCCAACCGGCCAAGGX_XX_XX_X
3._PA_56_[PER]
AAGGCCAGCCAACCGGCCAAGGX_XX_XX_X
4._PA_56_[PER]
AAGGCCAGCCAACCGGCCAAGGX_XX_XX_X
5._NA
AAGGCCAGCCAACCGGCCAAGGX_XX_XX_X
6._NA
AAGGCCAGCCAACCGGCCAAGGX_XX_XX_X
7._NA
AAGGCCAGCCAACCGGCCAAGGX_XX_XX_X
8._NA
AAGGCCAGCCAACCGGCCAAGGX_XX_XX_X
9._NA
AAGGCCAGCCAACCGGCCAAGGX_XX_XX_X
10._RUQ_32
AA_CCAGCCACCCGGCC__X_XX_XX_X
11._RUQ_32
AAGGCCAGCCACCCGGCCAAGGX_XX_XX_X
12._PA_56_[PER]
AAGGCCAGCCACCCGGCCAAGGX_XX_XX_X
13._RUQ_1569
AA_CCAGCCAACCGGAC__X_XX_XX_X
14._RUQ_37
AA_CCGGCCAACCGGCC__X_XX_XX_X
15._RUQ_1564
AA_CCAGCCAACCGGAC__X_XX_XX_X
16._RUQ_1436
AA_CCAGCCACCCGGCC__X_XX_XX_X
17._RUQ_1621
AA_CCGGCCAACCGGAC__X_XX_XX_X
18._PA_175_[PER]
AAGGCCGGCCAACCGGCCATGGX_XX_XX_X
19._PA_175_[PER]
AAGGCCGGCCAACCGGCCATGGX_XX_XX_X
20._PA_175_[PER]
AAGGCCGGCCAACCGGCCATGGX_XX_XX_X
21._PA_175_[PER]
AAGGCCGGCCAACCGGCCATGGX_XX_XX_X
22._PA_72_[PER]
AAGGCCAGCCAACCGTACAAGGX_XX_XX_X
23._PA_72_[PER]
AAGGCCAGCCAACCGTACAAGGX_XX_XX_X
24._PA_72_[PER]
AAGGCCAGCCAACCGTACAAGGX_XX_XX_X
25._PA_72_[PER]
AAGGCCAGCCAACCGTACAAGGX_XX_XX_X
26._PA_72_[PER]
AAGGCCAGCCAACCGTACAAGGX_XX_XX_X
27._PA_72_[PER]
AAGGCCAGCCAACCGTACAAGGX_XX_XX_X
28._PA_72_[PER]
AAGGCCAGCCAACCGTACAAGGX_XX_XX_X
29._PA_72_[PER]
AAGGCCAGCCAACCGTACAAGGX_XX_XX_X
30._PA_72_[PER]
AAGGCCAGCCAACCGTACAAGGX_XX_XX_X
31._PA_72_[PER]
AAGGCCAGCCAACCGTACAAGGX_XX_XX_X
32._NA
AAGGCCGGCCAACCGGCCATGGX_XX_XX_X
33._NA
AAGGCCGGCCAACCGGCCATGGX_XX_XX_X
34._NA
AAGGCCGGCCAACCGGCCATGGX_XX_XX_X
35._NA
AAGGCCGGCCAACCGGCCATGGX_XX_XX_X
36._GC-08-051-1-62
AAGGCCAGCCAACCGTACAAGGX_XX_XX_X
37._GC-08-051-1-62
AAGGCCAGCCAACCGTACAAGGX_XX_XX_X
38._GC-08-051-1-62
AAGGCCAGCCAACCGTACAAGGX_XX_XX_X
39._GC-08-051-1-62
AAGGCCAGCCAACCGTACAAGGX_XX_XX_X
40._GC-08-051-1-62
AAGGCCAGCCAACCGTACAAGGX_XX_XX_X
41._GC-08-051-1-62
AAGGCCAGCCAACCGTACAAGGX_XX_XX_X
42._GC-08-051-1-62
AAGGCCAGCCAACCGTACAAGGX_XX_XX_X
43._GC-08-051-1-62
AAGGCCAGCCAACCGTACAAGGX_XX_XX_X
44._GC-08-051-1-62
AAGGCCAGCCAACCGTACAAGGX_XX_XX_X
45._GC-08-051-1-62
AAGGCCAGCCAACCGTACAAGGX_XX_XX_X

Input profile: PA_56_[PER]

 
Mars Center for Cocoa Science, Brazil
Location: 8176 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

1._PA_56_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 2
 Dapeng Zhang, 2016

2._PA_56_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 3
 Dapeng Zhang, 2016

3._PA_56_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 4
 Dapeng Zhang, 2016

4._PA_56_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 6
 Dapeng Zhang, 2016

5._PA_56_[PER] NA

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

6._PA_56_[PER] NA

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

7._PA_56_[PER] NA

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

8._PA_56_[PER] NA

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: Dead
 Mars, 2018

9._PA_56_[PER] NA

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: Dead
 Mars, 2018

10._PA_56_[PER] RUQ_32

97.8 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

11._PA_56_[PER] RUQ_32

96.2 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

12._PA_56_[PER]

96.2 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 238
 Dapeng Zhang, 2016

13._CRUZ_7_/14 RUQ_1569

93.5 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

14._PA_175_[PER] RUQ_37

93.5 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

15._PA_71_[PER] RUQ_1564

93.5 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

16._MOQ_6_/95 RUQ_1436

91.3 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

17._PA_299_[PER] RUQ_1621

91.3 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

18._PA_175_[PER]

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8127 5
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

19._PA_175_[PER]

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8127 8
 Dapeng Zhang, 2016

20._PA_175_[PER]

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8127 9
 Dapeng Zhang, 2016

21._PA_175_[PER]

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8127 12
 Dapeng Zhang, 2016

22._PA_72_[PER]

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

23._PA_72_[PER]

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 3
 Dapeng Zhang, 2016

24._PA_72_[PER]

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 5
 Dapeng Zhang, 2016

25._PA_72_[PER]

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 6
 Dapeng Zhang, 2016

26._PA_72_[PER]

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 8
 Dapeng Zhang, 2016

27._PA_72_[PER]

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 9
 Dapeng Zhang, 2016

28._PA_72_[PER]

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 10
 Dapeng Zhang, 2016

29._PA_72_[PER]

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 1 > FP
 Dapeng Zhang, 2016

30._PA_72_[PER]

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 4 > FP
 Dapeng Zhang, 2016

31._PA_72_[PER]

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 7 > FP
 Dapeng Zhang, 2016

32._PA_175_[PER] NA

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

33._PA_175_[PER] NA

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

34._PA_175_[PER] NA

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

35._PA_175_[PER] NA

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

36._PA_72_[PER] GC-08-051-1-62

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

37._PA_72_[PER] GC-08-051-1-62

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

38._PA_72_[PER] GC-08-051-1-62

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

39._PA_72_[PER] GC-08-051-1-62

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

40._PA_72_[PER] GC-08-051-1-62

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

41._PA_72_[PER] GC-08-051-1-62

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

42._PA_72_[PER] GC-08-051-1-62

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

43._PA_72_[PER] GC-08-051-1-62

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

44._PA_72_[PER] GC-08-051-1-62

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

45._PA_72_[PER] GC-08-051-1-62

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25