SNP Profiles matching PA 175 [PER]

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 Key

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_Input profile
CCGGCGCTTTACCCTTCCCCAAAGCCAA
1._PA_175_[PER]
CCGGCGCTTTACCCTTCCCCAAAGCCAA
2._PA_175_[PER]
CCGGCGCTTTACCCTTCCCCAAAGCCAA
3._PA_175_[PER]
CCGGCGCTTTACCCTTCCCCAAAGCCAA
4._NA
CCGGCGCTTTACCCTTCCCCAAAGCCAA
5._NA
CCGGCGCTTTACCCTTCCCCAAAGCCAA
6._NA
CCGGCGCTTTACCCTTCCCCAAAGCCAA
7._NA
CCGGCGCTTTACCCTTCCCCAAAGCCAA
8._RUQ_37
__GGCGCT______TT________CCAA
9._RUQ_37
CCGGCGCTTTACCCTTCCCCAAAGCCAA
10._PA_175_[PER]
CCGGCGCTTTACCCTTCCCCAAAGCCAA
11._PA_175_[PER]
CCGGCGCTTTACCCTTCCCCAAAGCCAA
12._RUQ_32
__GGCGCT______TT________CCAG
13._PA_56_[PER]
CCGGCGCTTTACCCTTCCCCAAGGCCAG
14._PA_56_[PER]
CCGGCGCTTTACCCTTCCCCAAGGCCAG
15._PA_56_[PER]
CCGGCGCTTTACCCTTCCCCAAGGCCAG
16._PA_56_[PER]
CCGGCGCTTTACCCTTCCCCAAGGCCAG
17._NA
CCGGCGCTTTACCCTTCCCCAAGGCCAG
18._NA
CCGGCGCTTTACCCTTCCCCAAGGCCAG
19._NA
CCGGCGCTTTACCCTTCCCCAAGGCCAG
20._NA
CCGGCGCTTTACCCTTCCCCAAGGCCAG
21._PA_56_[PER]
CCGGCGCTTTACCCTTCCCCAAGGCCAG
22._NA
CCGGCGCTTTACCCTTCCCCAAGGCCAG
 1516171819202122232425262728
_Input profile
TTAACGCTCCGGGGGGTTACCGGTCTAC
1._PA_175_[PER]
TTAACGCTCCGGGGGGTTACCGGTCTAC
2._PA_175_[PER]
TTAACGCTCCGGGGGGTTACCGGTCTAC
3._PA_175_[PER]
TTAACGCTCCGGGGGGTTACCGGTCTAC
4._NA
TTAACGCTCCGGGGGGTTACCGGTCTAC
5._NA
TTAACGCTCCGGGGGGTTACCGGTCTAC
6._NA
TTAACGCTCCGGGGGGTTACCGGTCTAC
7._NA
TTAACGCTCCGGGGGGTTACCGGTCTAC
8._RUQ_37
________CCGGGG__TTACCGGTCTAC
9._RUQ_37
TTAACGCTCCGGGGAATTACCGGTCTAC
10._PA_175_[PER]
TTAACGCTCCGGGGAATTACCGGTCTAC
11._PA_175_[PER]
TTAACGCTCCGG__AATTACCGGTCTAC
12._RUQ_32
________CCGGGG__TTCCCGGTCTAC
13._PA_56_[PER]
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
14._PA_56_[PER]
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
15._PA_56_[PER]
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
16._PA_56_[PER]
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
17._NA
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
18._NA
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
19._NA
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
20._NA
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
21._PA_56_[PER]
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
22._NA
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
 293031323334353637383940  
_Input profile
AAGGAACCGGCCAACCGGCCATGGX_XX_X
1._PA_175_[PER]
AAGGAACCGGCCAACCGGCCATGGX_XX_X
2._PA_175_[PER]
AAGGAACCGGCCAACCGGCCATGGX_XX_X
3._PA_175_[PER]
AAGGAACCGGCCAACCGGCCATGGX_XX_X
4._NA
AAGGAACCGGCCAACCGGCCATGGX_XX_X
5._NA
AAGGAACCGGCCAACCGGCCATGGX_XX_X
6._NA
AAGGAACCGGCCAACCGGCCATGGX_XX_X
7._NA
AAGGAACCGGCCAACCGGCCATGGX_XX_X
8._RUQ_37
AA__AACCGGCCAACCGGCC____X_XX_X
9._RUQ_37
AAGGAACCGGCCAACCGGCCATGGX_XX_X
10._PA_175_[PER]
AAGGAACCGGCCAACCGGCCATGGX_XX_X
11._PA_175_[PER]
AAGGAACCGGCCAACCGGCCATGGX_XX_X
12._RUQ_32
AA__AACCAGCCACCCGGCC____X_XX_X
13._PA_56_[PER]
AAGGAACCAGCCAACCGGCCAAGGX_XX_X
14._PA_56_[PER]
AAGGAACCAGCCAACCGGCCAAGGX_XX_X
15._PA_56_[PER]
AAGGAACCAGCCAACCGGCCAAGGX_XX_X
16._PA_56_[PER]
AAGGAACCAGCCAACCGGCCAAGGX_XX_X
17._NA
AAGGAACCAGCCAACCGGCCAAGGX_XX_X
18._NA
AAGGAACCAGCCAACCGGCCAAGGX_XX_X
19._NA
AAGGAACCAGCCAACCGGCCAAGGX_XX_X
20._NA
AAGGAACCAGCCAACCGGCCAAGGX_XX_X
21._PA_56_[PER]
AAGG__CCAGCCAACCGGCCAAGGX_XX_X
22._NA
AAGG__CCAGCCAACCGGCCAAGGX_XX_X

Input profile: PA_175_[PER]

 
Mars Center for Cocoa Science, Brazil
Location: 8127 8
 Dapeng Zhang, 2016

1._PA_175_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8127 5
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

2._PA_175_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8127 9
 Dapeng Zhang, 2016

3._PA_175_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8127 12
 Dapeng Zhang, 2016

4._PA_175_[PER] NA

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

5._PA_175_[PER] NA

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

6._PA_175_[PER] NA

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

7._PA_175_[PER] NA

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

8._PA_175_[PER] RUQ_37

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

9._PA_175_[PER] RUQ_37

97.5 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

10._PA_175_[PER]

97.5 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 738
 Dapeng Zhang, 2016

11._PA_175_[PER]

97.4 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B F473 T6
 Dapeng Zhang, 2014

12._PA_56_[PER] RUQ_32

91.7 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

13._PA_56_[PER]

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 2
 Dapeng Zhang, 2016

14._PA_56_[PER]

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 3
 Dapeng Zhang, 2016

15._PA_56_[PER]

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 4
 Dapeng Zhang, 2016

16._PA_56_[PER]

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 6
 Dapeng Zhang, 2016

17._PA_56_[PER] NA

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

18._PA_56_[PER] NA

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

19._PA_56_[PER] NA

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: Dead
 Mars, 2018

20._PA_56_[PER] NA

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: Dead
 Mars, 2018

21._PA_56_[PER]

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

22._PA_56_[PER] NA

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25