SNP Profiles matching PA 56 [PER]

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCGGCGCTTTACCCTTCCCCAAAGCCAA
1._PA_175_[PER]___
CCGGCGCTTTACCCTTCCCCAAAGCCAA
2._PA_175_[PER]___
CCGGCGCTTTACCCTTCCCCAAAGCCAA
3._PA_175_[PER]___
CCGGCGCTTTACCCTTCCCCAAAGCCAA
4._PA_175_[PER]___
CCGGCGCTTTACCCTTCCCCAAAGCCAA
5._PA_175_[PER]___
CCGGCGCTTTACCCTTCCCCAAAGCCAA
6._PA_175_[PER]___
CCGGCGCTTTACCCTTCCCCAAAGCCAA
7._PA_175_[PER]___
CCGGCGCTTTACCCTTCCCCAAAGCCAA
8._PA_175_[PER]___
__GGCGCT______TT________CCAA
9._PA_175_[PER]___
CCGGCGCTTTACCCTTCCCCAAAGCCAA
10._PA_175_[PER]___
CCGGCGCTTTACCCTTCCCCAAAGCCAA
11._PA_175_[PER]___
CCGGCGCTTTACCCTTCCCCAAAGCCAA
12._PA_56_[PER]___
__GGCGCT______TT________CCAG
13._PA_56_[PER]___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
14._PA_56_[PER]___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
15._PA_56_[PER]___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
16._PA_56_[PER]___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
17._PA_56_[PER]___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
18._PA_56_[PER]___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
19._PA_56_[PER]___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
20._PA_56_[PER]___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
21._PA_56_[PER]___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
22._PA_56_[PER]___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
TTAACGCTCCGGGGGGTTACCGGTCTAC
1._PA_175_[PER]___
TTAACGCTCCGGGGGGTTACCGGTCTAC
2._PA_175_[PER]___
TTAACGCTCCGGGGGGTTACCGGTCTAC
3._PA_175_[PER]___
TTAACGCTCCGGGGGGTTACCGGTCTAC
4._PA_175_[PER]___
TTAACGCTCCGGGGGGTTACCGGTCTAC
5._PA_175_[PER]___
TTAACGCTCCGGGGGGTTACCGGTCTAC
6._PA_175_[PER]___
TTAACGCTCCGGGGGGTTACCGGTCTAC
7._PA_175_[PER]___
TTAACGCTCCGGGGGGTTACCGGTCTAC
8._PA_175_[PER]___
________CCGGGG__TTACCGGTCTAC
9._PA_175_[PER]___
TTAACGCTCCGGGGAATTACCGGTCTAC
10._PA_175_[PER]___
TTAACGCTCCGGGGAATTACCGGTCTAC
11._PA_175_[PER]___
TTAACGCTCCGG__AATTACCGGTCTAC
12._PA_56_[PER]___
________CCGGGG__TTCCCGGTCTAC
13._PA_56_[PER]___
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
14._PA_56_[PER]___
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
15._PA_56_[PER]___
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
16._PA_56_[PER]___
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
17._PA_56_[PER]___
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
18._PA_56_[PER]___
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
19._PA_56_[PER]___
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
20._PA_56_[PER]___
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
21._PA_56_[PER]___
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
22._PA_56_[PER]___
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AAGGAACCGGCCAACCGGCCATGGX_XX_X
1._PA_175_[PER]___
AAGGAACCGGCCAACCGGCCATGGX_XX_X
2._PA_175_[PER]___
AAGGAACCGGCCAACCGGCCATGGX_XX_X
3._PA_175_[PER]___
AAGGAACCGGCCAACCGGCCATGGX_XX_X
4._PA_175_[PER]___
AAGGAACCGGCCAACCGGCCATGGX_XX_X
5._PA_175_[PER]___
AAGGAACCGGCCAACCGGCCATGGX_XX_X
6._PA_175_[PER]___
AAGGAACCGGCCAACCGGCCATGGX_XX_X
7._PA_175_[PER]___
AAGGAACCGGCCAACCGGCCATGGX_XX_X
8._PA_175_[PER]___
AA__AACCGGCCAACCGGCC____X_XX_X
9._PA_175_[PER]___
AAGGAACCGGCCAACCGGCCATGGX_XX_X
10._PA_175_[PER]___
AAGGAACCGGCCAACCGGCCATGGX_XX_X
11._PA_175_[PER]___
AAGGAACCGGCCAACCGGCCATGGX_XX_X
12._PA_56_[PER]___
AA__AACCAGCCACCCGGCC____X_XX_X
13._PA_56_[PER]___
AAGGAACCAGCCAACCGGCCAAGGX_XX_X
14._PA_56_[PER]___
AAGGAACCAGCCAACCGGCCAAGGX_XX_X
15._PA_56_[PER]___
AAGGAACCAGCCAACCGGCCAAGGX_XX_X
16._PA_56_[PER]___
AAGGAACCAGCCAACCGGCCAAGGX_XX_X
17._PA_56_[PER]___
AAGGAACCAGCCAACCGGCCAAGGX_XX_X
18._PA_56_[PER]___
AAGGAACCAGCCAACCGGCCAAGGX_XX_X
19._PA_56_[PER]___
AAGGAACCAGCCAACCGGCCAAGGX_XX_X
20._PA_56_[PER]___
AAGGAACCAGCCAACCGGCCAAGGX_XX_X
21._PA_56_[PER]___
AAGG__CCAGCCAACCGGCCAAGGX_XX_X
22._PA_56_[PER]___
AAGG__CCAGCCAACCGGCCAAGGX_XX_X

Input profile: PA_175_[PER]

 
Mars Center for Cocoa Science, Brazil
Location: 8127 5
 Dapeng Zhang, 2016

1._PA_175_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8127 8
 Dapeng Zhang, 2016

2._PA_175_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8127 9
 Dapeng Zhang, 2016

3._PA_175_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8127 12
 Dapeng Zhang, 2016

4._PA_175_[PER] NA

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

5._PA_175_[PER] NA

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

6._PA_175_[PER] NA

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

7._PA_175_[PER] NA

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

8._PA_175_[PER] RUQ_37

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

9._PA_175_[PER] RUQ_37

97.5 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

10._PA_175_[PER]

97.5 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 738
 Dapeng Zhang, 2016

11._PA_175_[PER]

97.4 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B F473 T6
 Dapeng Zhang, 2014

12._PA_56_[PER] RUQ_32

91.7 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

13._PA_56_[PER]

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 2
 Dapeng Zhang, 2016

14._PA_56_[PER]

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 3
 Dapeng Zhang, 2016

15._PA_56_[PER]

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 4
 Dapeng Zhang, 2016

16._PA_56_[PER]

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 6
 Dapeng Zhang, 2016

17._PA_56_[PER] NA

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

18._PA_56_[PER] NA

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

19._PA_56_[PER] NA

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: Dead
 Mars, 2018

20._PA_56_[PER] NA

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: Dead
 Mars, 2018

21._PA_56_[PER]

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 1
 Dapeng Zhang, 2016

22._PA_56_[PER] NA

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25