SNP Profiles matching PA 175 [PER]

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 Key

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_Input profile
CCGGCGCTTTACCCTTCCCCAAAGCCAA
1._RUQ_37
CCGGCGCTTTACCCTTCCCCAAAGCCAA
2._PA_175_[PER]
CCGGCGCTTTACCCTTCCCCAAAGCCAA
3._RUQ_37
__GGCGCT______TT________CCAA
4._PA_175_[PER]
CCGGCGCTTTACCCTTCCCCAAAGCCAA
5._PA_175_[PER]
CCGGCGCTTTACCCTTCCCCAAAGCCAA
6._PA_175_[PER]
CCGGCGCTTTACCCTTCCCCAAAGCCAA
7._PA_175_[PER]
CCGGCGCTTTACCCTTCCCCAAAGCCAA
8._NA
CCGGCGCTTTACCCTTCCCCAAAGCCAA
9._NA
CCGGCGCTTTACCCTTCCCCAAAGCCAA
10._NA
CCGGCGCTTTACCCTTCCCCAAAGCCAA
11._NA
CCGGCGCTTTACCCTTCCCCAAAGCCAA
12._RUQ_32
__GGCGCT______TT________CCAG
13._PA_46_[PER]
CCGGGGCTTTACCCTTCCCCAAGGCCAG
14._RUQ_32
CCGGCGCTTTACCCTTCCCCAAGGCCAG
15._PA_56_[PER]
CCGGCGCTTTACCCTTCCCCAAGGCCAG
 1516171819202122232425262728
_Input profile
TTAACGCTCCGGGGAATTACCGGTCTAC
1._RUQ_37
TTAACGCTCCGGGGAATTACCGGTCTAC
2._PA_175_[PER]
TTAACGCTCCGG__AATTACCGGTCTAC
3._RUQ_37
________CCGGGG__TTACCGGTCTAC
4._PA_175_[PER]
TTAACGCTCCGGGGGGTTACCGGTCTAC
5._PA_175_[PER]
TTAACGCTCCGGGGGGTTACCGGTCTAC
6._PA_175_[PER]
TTAACGCTCCGGGGGGTTACCGGTCTAC
7._PA_175_[PER]
TTAACGCTCCGGGGGGTTACCGGTCTAC
8._NA
TTAACGCTCCGGGGGGTTACCGGTCTAC
9._NA
TTAACGCTCCGGGGGGTTACCGGTCTAC
10._NA
TTAACGCTCCGGGGGGTTACCGGTCTAC
11._NA
TTAACGCTCCGGGGGGTTACCGGTCTAC
12._RUQ_32
________CCGGGG__TTCCCGGTCTAC
13._PA_46_[PER]
CTAACGCTCCGG__AATTACCGGGCTAA
14._RUQ_32
CTAAGGCTCCGGGGAATTCCCGGTCTAC
15._PA_56_[PER]
CTAAGGCTCCGGGGAATTCCCGGTCTAC
 293031323334353637383940  
_Input profile
AAGGAACCGGCCAACCGGCCATGGX_XX_X
1._RUQ_37
AAGGAACCGGCCAACCGGCCATGGX_XX_X
2._PA_175_[PER]
AAGGAACCGGCCAACCGGCCATGGX_XX_X
3._RUQ_37
AA__AACCGGCCAACCGGCC____X_XX_X
4._PA_175_[PER]
AAGGAACCGGCCAACCGGCCATGGX_XX_X
5._PA_175_[PER]
AAGGAACCGGCCAACCGGCCATGGX_XX_X
6._PA_175_[PER]
AAGGAACCGGCCAACCGGCCATGGX_XX_X
7._PA_175_[PER]
AAGGAACCGGCCAACCGGCCATGGX_XX_X
8._NA
AAGGAACCGGCCAACCGGCCATGGX_XX_X
9._NA
AAGGAACCGGCCAACCGGCCATGGX_XX_X
10._NA
AAGGAACCGGCCAACCGGCCATGGX_XX_X
11._NA
AAGGAACCGGCCAACCGGCCATGGX_XX_X
12._RUQ_32
AA__AACCAGCCACCCGGCC____X_XX_X
13._PA_46_[PER]
AAGGAACCGG__AACCGGACATGGX_XX_X
14._RUQ_32
AAGGAACCAGCCACCCGGCCAAGGX_XX_X
15._PA_56_[PER]
AAGGAACCAGCCACCCGGCCAAGGX_XX_X

Input profile: PA_175_[PER]

 
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 738
 Dapeng Zhang, 2016

1._PA_175_[PER] RUQ_37

identical
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

2._PA_175_[PER]

identical
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B F473 T6
 Dapeng Zhang, 2014

3._PA_175_[PER] RUQ_37

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

4._PA_175_[PER]

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8127 5
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

5._PA_175_[PER]

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8127 8
 Dapeng Zhang, 2016

6._PA_175_[PER]

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8127 9
 Dapeng Zhang, 2016

7._PA_175_[PER]

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8127 12
 Dapeng Zhang, 2016

8._PA_175_[PER] NA

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

9._PA_175_[PER] NA

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

10._PA_175_[PER] NA

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

11._PA_175_[PER] NA

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

12._PA_56_[PER] RUQ_32

91.7 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

13._PA_46_[PER]

90.8 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 235
 Dapeng Zhang, 2014

14._PA_56_[PER] RUQ_32

90 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

15._PA_56_[PER]

90 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 238
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25