SNP Profiles matching PA 156 [PER]

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 Key

 1234567891011121314
_Input profile
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
1._PA_156_[PER]
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
2._PA_156_[PER]
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
3._PA_156_[PER]
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
4._GC-05-137-3-39
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
5._GC-05-137-3-39
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
6._GC-05-137-3-39
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
7._GC-05-137-3-39
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
8._RUQ_1531
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
9._PA_156_[PER]
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
10._PA_156_[PER]
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
11._GC-05-137-3-39
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
12._PA_186_[PER]
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
13._PA_156_[PER]
CCAGGGCTTTCCTTTTCC__AAGGCCAG
14._RUQ_1531
__AGGGCT______TT________CCAG
15._RUQ_1567
__AGGGCT______TT________CCAG
16._EET_400_[ECU]
CCAGGGCCTTCCTTTTCCCCAAGGCCAG
 1516171819202122232425262728
_Input profile
CCAACGTTCCGGGGAATTCCCGTTCCAC
1._PA_156_[PER]
CCAACGTTCCGGGGAATTCCCGTTCCAC
2._PA_156_[PER]
CCAACGTTCCGGGGAATTCCCGTTCCAC
3._PA_156_[PER]
CCAACGTTCCGGGGAATTCCCGTTCCAC
4._GC-05-137-3-39
CCAACGTTCCGGGGAATTCCCGTTCCAC
5._GC-05-137-3-39
CCAACGTTCCGGGGAATTCCCGTTCCAC
6._GC-05-137-3-39
CCAACGTTCCGGGGAATTCCCGTTCCAC
7._GC-05-137-3-39
CCAACGTTCCGGGGAATTCCCGTTCCAC
8._RUQ_1531
CCAACGTTCCGGGGAATTCCCGTTCCAC
9._PA_156_[PER]
CCAACGTTCCGGGGAATTCCCGTTCCAC
10._PA_156_[PER]
CCAACGTTCCGGGGAATTCCCGTTCCAC
11._GC-05-137-3-39
CCAACGTTCCGGGGAATTCCCGTTCCAC
12._PA_186_[PER]
CCAACGTTCCGG__AATTCCCGTTCCAC
13._PA_156_[PER]
CCAACGTTCCGGGGAATTCCCGTTCCAC
14._RUQ_1531
________CCGGGG__TTCCCGTTCCAC
15._RUQ_1567
________CCGGGG__TTACCGTTCTCC
16._EET_400_[ECU]
CTAACGTTCCGGGGAATTCCGGTTCCAC
 293031323334353637383940  
_Input profile
AAGGAACCAACCAACCGGACATGGX_XX_X
1._PA_156_[PER]
AAGGAACCAACCAACCGGACATGGX_XX_X
2._PA_156_[PER]
AAGGAACCAACCAACCGGACATGGX_XX_X
3._PA_156_[PER]
AAGGAACCAACCAACCGGACATGGX_XX_X
4._GC-05-137-3-39
AAGGAACCAACCAACCGGACATGGX_XX_X
5._GC-05-137-3-39
AAGGAACCAACCAACCGGACATGGX_XX_X
6._GC-05-137-3-39
AAGGAACCAACCAACCGGACATGGX_XX_X
7._GC-05-137-3-39
AAGGAACCAACCAACCGGACATGGX_XX_X
8._RUQ_1531
AAGGAACCAACCAACCGGACATGGX_XX_X
9._PA_156_[PER]
AAGGAACCAACCAACCGGACATGGX_XX_X
10._PA_156_[PER]
AAGGAACCAACCAA__GGACATGGX_XX_X
11._GC-05-137-3-39
AAGGAACCAACCAA__GGACATGGX_XX_X
12._PA_186_[PER]
AAGGAACCAACCAACCGGACATGGX_XX_X
13._PA_156_[PER]
AAGGAACCAA__AACCGGACATGGX_XX_X
14._RUQ_1531
AA__AACCAACCAACCGGAC____X_XX_X
15._RUQ_1567
AA__AACCAACCAACCGGAC____X_XX_X
16._EET_400_[ECU]
AAGGAACCAACCACCTGGACATGGX_XX_X

Input profile: PA_156_[PER]

 
Mars Center for Cocoa Science, Brazil
Location: 5339 2
 Dapeng Zhang, 2016

1._PA_156_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 5 > FP
 Dapeng Zhang, 2016

2._PA_156_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 4 > FP
 Dapeng Zhang, 2016

3._PA_156_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 3 > FP
 Dapeng Zhang, 2016

4._PA_156_[PER] GC-05-137-3-39

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

5._PA_156_[PER] GC-05-137-3-39

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

6._PA_156_[PER] GC-05-137-3-39

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

7._PA_156_[PER] GC-05-137-3-39

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

8._PA_156_[PER] RUQ_1531

identical
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

9._PA_156_[PER]

identical
40 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row1 C0184 28
 Dapeng Zhang, 2016

10._PA_156_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

11._PA_156_[PER] GC-05-137-3-39

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

12._PA_186_[PER]

identical
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 446
 Dapeng Zhang, 2014

13._PA_156_[PER]

identical
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D295 T1
 Dapeng Zhang, 2016

14._PA_156_[PER] RUQ_1531

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

15._PA_39_[PER] RUQ_1567

93.8 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

16._EET_400_[ECU]

93.8 %
40 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot85/Trial II 2B
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25