SNP Profiles matching PA 156 [PER]

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 Key

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_Input profile
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
1._PA_156_[PER]
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
2._PA_156_[PER]
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
3._PA_156_[PER]
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
4._PA_156_[PER]
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
5._GC-05-137-3-39
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
6._GC-05-137-3-39
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
7._GC-05-137-3-39
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
8._GC-05-137-3-39
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
9._GC-05-137-3-39
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
10._RUQ_1531
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
11._PA_156_[PER]
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
12._PA_186_[PER]
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
13._PA_156_[PER]
CCAGGGCTTTCCTTTTCC__AAGGCCAG
14._RUQ_1531
__AGGGCT______TT________CCAG
15._EET_400_[ECU]
CCAGGGCCTTCCTTTTCCCCAAGGCCAG
16._RUQ_1567
__AGGGCT______TT________CCAG
17._PA_184_[PER]
CCAGCGCTTTCCTTTTCCCCAAGGCCAG
 1516171819202122232425262728
_Input profile
CCAACGTTCCGGGGAATTCCCGTTCCAC
1._PA_156_[PER]
CCAACGTTCCGGGGAATTCCCGTTCCAC
2._PA_156_[PER]
CCAACGTTCCGGGGAATTCCCGTTCCAC
3._PA_156_[PER]
CCAACGTTCCGGGGAATTCCCGTTCCAC
4._PA_156_[PER]
CCAACGTTCCGGGGAATTCCCGTTCCAC
5._GC-05-137-3-39
CCAACGTTCCGGGGAATTCCCGTTCCAC
6._GC-05-137-3-39
CCAACGTTCCGGGGAATTCCCGTTCCAC
7._GC-05-137-3-39
CCAACGTTCCGGGGAATTCCCGTTCCAC
8._GC-05-137-3-39
CCAACGTTCCGGGGAATTCCCGTTCCAC
9._GC-05-137-3-39
CCAACGTTCCGGGGAATTCCCGTTCCAC
10._RUQ_1531
CCAACGTTCCGGGGAATTCCCGTTCCAC
11._PA_156_[PER]
CCAACGTTCCGGGGAATTCCCGTTCCAC
12._PA_186_[PER]
CCAACGTTCCGG__AATTCCCGTTCCAC
13._PA_156_[PER]
CCAACGTTCCGGGGAATTCCCGTTCCAC
14._RUQ_1531
________CCGGGG__TTCCCGTTCCAC
15._EET_400_[ECU]
CTAACGTTCCGGGGAATTCCGGTTCCAC
16._RUQ_1567
________CCGGGG__TTACCGTTCTCC
17._PA_184_[PER]
CTAACGCCCCGG__AATTACCGTTCCAA
 2930313233343536373839   
_Input profile
AAGGAACCAACCAAGGACATGGX_XX_XX_X
1._PA_156_[PER]
AAGGAACCAACCAAGGACATGGX_XX_XX_X
2._PA_156_[PER]
AAGGAACCAACCAAGGACATGGX_XX_XX_X
3._PA_156_[PER]
AAGGAACCAACCAAGGACATGGX_XX_XX_X
4._PA_156_[PER]
AAGGAACCAACCAAGGACATGGX_XX_XX_X
5._GC-05-137-3-39
AAGGAACCAACCAAGGACATGGX_XX_XX_X
6._GC-05-137-3-39
AAGGAACCAACCAAGGACATGGX_XX_XX_X
7._GC-05-137-3-39
AAGGAACCAACCAAGGACATGGX_XX_XX_X
8._GC-05-137-3-39
AAGGAACCAACCAAGGACATGGX_XX_XX_X
9._GC-05-137-3-39
AAGGAACCAACCAAGGACATGGX_XX_XX_X
10._RUQ_1531
AAGGAACCAACCAAGGACATGGX_XX_XX_X
11._PA_156_[PER]
AAGGAACCAACCAAGGACATGGX_XX_XX_X
12._PA_186_[PER]
AAGGAACCAACCAAGGACATGGX_XX_XX_X
13._PA_156_[PER]
AAGGAACCAA__AAGGACATGGX_XX_XX_X
14._RUQ_1531
AA__AACCAACCAAGGAC____X_XX_XX_X
15._EET_400_[ECU]
AAGGAACCAACCACGGACATGGX_XX_XX_X
16._RUQ_1567
AA__AACCAACCAAGGAC____X_XX_XX_X
17._PA_184_[PER]
AAGGAACCAA__AAGGAAATGGX_XX_XX_X

Input profile: PA_156_[PER]

 
Mars Center for Cocoa Science, Brazil
Location: 5339 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

1._PA_156_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 5 > FP
 Dapeng Zhang, 2016

2._PA_156_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 4 > FP
 Dapeng Zhang, 2016

3._PA_156_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 3 > FP
 Dapeng Zhang, 2016

4._PA_156_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 2
 Dapeng Zhang, 2016

5._PA_156_[PER] GC-05-137-3-39

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

6._PA_156_[PER] GC-05-137-3-39

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

7._PA_156_[PER] GC-05-137-3-39

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

8._PA_156_[PER] GC-05-137-3-39

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

9._PA_156_[PER] GC-05-137-3-39

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

10._PA_156_[PER] RUQ_1531

identical
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

11._PA_156_[PER]

identical
39 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row1 C0184 28
 Dapeng Zhang, 2016

12._PA_186_[PER]

identical
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 446
 Dapeng Zhang, 2014

13._PA_156_[PER]

identical
37 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D295 T1
 Dapeng Zhang, 2016

14._PA_156_[PER] RUQ_1531

identical
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

15._EET_400_[ECU]

94.9 %
39 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot85/Trial II 2B
 Dapeng Zhang, 2016

16._PA_39_[PER] RUQ_1567

93.5 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

17._PA_184_[PER]

90.5 %
37 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 723
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25