SNP Profiles matching PA 156 [PER]

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
1._PA_156_[PER]___
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
2._PA_156_[PER]___
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
3._PA_156_[PER]___
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
4._PA_156_[PER]___
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
5._PA_156_[PER]___
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
6._PA_156_[PER]___
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
7._PA_156_[PER]___
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
8._PA_156_[PER]___
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
9._PA_156_[PER]___
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
10._PA_156_[PER]___
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
11._PA_156_[PER]___
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
12._PA_186_[PER]___
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
13._PA_156_[PER]___
CCAGGGCTTTCCTTTTCC__AAGGCCAG
14._PA_156_[PER]___
__AGGGCT______TT________CCAG
15._PA_39_[PER]___
__AGGGCT______TT________CCAG
16._EET_400_[ECU]___
CCAGGGCCTTCCTTTTCCCCAAGGCCAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CCAACGTTCCGGGGAATTCCCGTTCCAC
1._PA_156_[PER]___
CCAACGTTCCGGGGAATTCCCGTTCCAC
2._PA_156_[PER]___
CCAACGTTCCGGGGAATTCCCGTTCCAC
3._PA_156_[PER]___
CCAACGTTCCGGGGAATTCCCGTTCCAC
4._PA_156_[PER]___
CCAACGTTCCGGGGAATTCCCGTTCCAC
5._PA_156_[PER]___
CCAACGTTCCGGGGAATTCCCGTTCCAC
6._PA_156_[PER]___
CCAACGTTCCGGGGAATTCCCGTTCCAC
7._PA_156_[PER]___
CCAACGTTCCGGGGAATTCCCGTTCCAC
8._PA_156_[PER]___
CCAACGTTCCGGGGAATTCCCGTTCCAC
9._PA_156_[PER]___
CCAACGTTCCGGGGAATTCCCGTTCCAC
10._PA_156_[PER]___
CCAACGTTCCGGGGAATTCCCGTTCCAC
11._PA_156_[PER]___
CCAACGTTCCGGGGAATTCCCGTTCCAC
12._PA_186_[PER]___
CCAACGTTCCGG__AATTCCCGTTCCAC
13._PA_156_[PER]___
CCAACGTTCCGGGGAATTCCCGTTCCAC
14._PA_156_[PER]___
________CCGGGG__TTCCCGTTCCAC
15._PA_39_[PER]___
________CCGGGG__TTACCGTTCTCC
16._EET_400_[ECU]___
CTAACGTTCCGGGGAATTCCGGTTCCAC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AAGGAACCAACCAACCGGACATGGX_XX_X
1._PA_156_[PER]___
AAGGAACCAACCAACCGGACATGGX_XX_X
2._PA_156_[PER]___
AAGGAACCAACCAACCGGACATGGX_XX_X
3._PA_156_[PER]___
AAGGAACCAACCAACCGGACATGGX_XX_X
4._PA_156_[PER]___
AAGGAACCAACCAACCGGACATGGX_XX_X
5._PA_156_[PER]___
AAGGAACCAACCAACCGGACATGGX_XX_X
6._PA_156_[PER]___
AAGGAACCAACCAACCGGACATGGX_XX_X
7._PA_156_[PER]___
AAGGAACCAACCAACCGGACATGGX_XX_X
8._PA_156_[PER]___
AAGGAACCAACCAACCGGACATGGX_XX_X
9._PA_156_[PER]___
AAGGAACCAACCAACCGGACATGGX_XX_X
10._PA_156_[PER]___
AAGGAACCAACCAA__GGACATGGX_XX_X
11._PA_156_[PER]___
AAGGAACCAACCAA__GGACATGGX_XX_X
12._PA_186_[PER]___
AAGGAACCAACCAACCGGACATGGX_XX_X
13._PA_156_[PER]___
AAGGAACCAA__AACCGGACATGGX_XX_X
14._PA_156_[PER]___
AA__AACCAACCAACCGGAC____X_XX_X
15._PA_39_[PER]___
AA__AACCAACCAACCGGAC____X_XX_X
16._EET_400_[ECU]___
AAGGAACCAACCACCTGGACATGGX_XX_X

Input profile: PA_156_[PER]

 
Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row1 C0184 28
 Dapeng Zhang, 2016

1._PA_156_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 5 > FP
 Dapeng Zhang, 2016

2._PA_156_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 4 > FP
 Dapeng Zhang, 2016

3._PA_156_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 3 > FP
 Dapeng Zhang, 2016

4._PA_156_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 2
 Dapeng Zhang, 2016

5._PA_156_[PER] GC-05-137-3-39

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

6._PA_156_[PER] GC-05-137-3-39

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

7._PA_156_[PER] GC-05-137-3-39

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

8._PA_156_[PER] GC-05-137-3-39

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

9._PA_156_[PER] RUQ_1531

identical
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

10._PA_156_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 1
 Dapeng Zhang, 2016

11._PA_156_[PER] GC-05-137-3-39

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

12._PA_186_[PER]

identical
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 446
 Dapeng Zhang, 2014

13._PA_156_[PER]

identical
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D295 T1
 Dapeng Zhang, 2016

14._PA_156_[PER] RUQ_1531

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

15._PA_39_[PER] RUQ_1567

93.8 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

16._EET_400_[ECU]

93.8 %
40 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot85/Trial II 2B
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25