SNP Profiles matching PA 156 [PER]

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 Key

 1234567891011121314
_Input profile
CCAGGGCTTTCCTTTTCCAAGGCCAGCC
1._PA_156_[PER]
CCAGGGCTTTCCTTTTCCAAGGCCAGCC
2._PA_156_[PER]
CCAGGGCTTTCCTTTTCCAAGGCCAGCC
3._PA_156_[PER]
CCAGGGCTTTCCTTTTCCAAGGCCAGCC
4._PA_156_[PER]
CCAGGGCTTTCCTTTTCCAAGGCCAGCC
5._GC-05-137-3-39
CCAGGGCTTTCCTTTTCCAAGGCCAGCC
6._GC-05-137-3-39
CCAGGGCTTTCCTTTTCCAAGGCCAGCC
7._GC-05-137-3-39
CCAGGGCTTTCCTTTTCCAAGGCCAGCC
8._GC-05-137-3-39
CCAGGGCTTTCCTTTTCCAAGGCCAGCC
9._RUQ_1531
CCAGGGCTTTCCTTTTCCAAGGCCAGCC
10._PA_156_[PER]
CCAGGGCTTTCCTTTTCCAAGGCCAGCC
11._PA_156_[PER]
CCAGGGCTTTCCTTTTCCAAGGCCAGCC
12._GC-05-137-3-39
CCAGGGCTTTCCTTTTCCAAGGCCAGCC
13._PA_186_[PER]
CCAGGGCTTTCCTTTTCCAAGGCCAGCC
14._RUQ_1531
__AGGGCT______TT______CCAG__
15._RUQ_1567
__AGGGCT______TT______CCAG__
16._EET_400_[ECU]
CCAGGGCCTTCCTTTTCCAAGGCCAGCT
 1516171819202122232425262728
_Input profile
AACGTTCCGGGGAATTCCCGTTCCACAA
1._PA_156_[PER]
AACGTTCCGGGGAATTCCCGTTCCACAA
2._PA_156_[PER]
AACGTTCCGGGGAATTCCCGTTCCACAA
3._PA_156_[PER]
AACGTTCCGGGGAATTCCCGTTCCACAA
4._PA_156_[PER]
AACGTTCCGGGGAATTCCCGTTCCACAA
5._GC-05-137-3-39
AACGTTCCGGGGAATTCCCGTTCCACAA
6._GC-05-137-3-39
AACGTTCCGGGGAATTCCCGTTCCACAA
7._GC-05-137-3-39
AACGTTCCGGGGAATTCCCGTTCCACAA
8._GC-05-137-3-39
AACGTTCCGGGGAATTCCCGTTCCACAA
9._RUQ_1531
AACGTTCCGGGGAATTCCCGTTCCACAA
10._PA_156_[PER]
AACGTTCCGGGGAATTCCCGTTCCACAA
11._PA_156_[PER]
AACGTTCCGGGGAATTCCCGTTCCACAA
12._GC-05-137-3-39
AACGTTCCGGGGAATTCCCGTTCCACAA
13._PA_186_[PER]
AACGTTCCGG__AATTCCCGTTCCACAA
14._RUQ_1531
______CCGGGG__TTCCCGTTCCACAA
15._RUQ_1567
______CCGGGG__TTACCGTTCTCCAA
16._EET_400_[ECU]
AACGTTCCGGGGAATTCCGGTTCCACAA
 29303132333435363738    
_Input profile
GGAACCAAAACCGGACATGGX_XX_XX_XX_X
1._PA_156_[PER]
GGAACCAAAACCGGACATGGX_XX_XX_XX_X
2._PA_156_[PER]
GGAACCAAAACCGGACATGGX_XX_XX_XX_X
3._PA_156_[PER]
GGAACCAAAACCGGACATGGX_XX_XX_XX_X
4._PA_156_[PER]
GGAACCAAAACCGGACATGGX_XX_XX_XX_X
5._GC-05-137-3-39
GGAACCAAAACCGGACATGGX_XX_XX_XX_X
6._GC-05-137-3-39
GGAACCAAAACCGGACATGGX_XX_XX_XX_X
7._GC-05-137-3-39
GGAACCAAAACCGGACATGGX_XX_XX_XX_X
8._GC-05-137-3-39
GGAACCAAAACCGGACATGGX_XX_XX_XX_X
9._RUQ_1531
GGAACCAAAACCGGACATGGX_XX_XX_XX_X
10._PA_156_[PER]
GGAACCAAAACCGGACATGGX_XX_XX_XX_X
11._PA_156_[PER]
GGAACCAAAA__GGACATGGX_XX_XX_XX_X
12._GC-05-137-3-39
GGAACCAAAA__GGACATGGX_XX_XX_XX_X
13._PA_186_[PER]
GGAACCAAAACCGGACATGGX_XX_XX_XX_X
14._RUQ_1531
__AACCAAAACCGGAC____X_XX_XX_XX_X
15._RUQ_1567
__AACCAAAACCGGAC____X_XX_XX_XX_X
16._EET_400_[ECU]
GGAACCAAACCTGGACATGGX_XX_XX_XX_X

Input profile: PA_156_[PER]

 
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D295 T1
 Dapeng Zhang, 2016

1._PA_156_[PER]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 5 > FP
 Dapeng Zhang, 2016

2._PA_156_[PER]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 4 > FP
 Dapeng Zhang, 2016

3._PA_156_[PER]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 3 > FP
 Dapeng Zhang, 2016

4._PA_156_[PER]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 2
 Dapeng Zhang, 2016

5._PA_156_[PER] GC-05-137-3-39

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

6._PA_156_[PER] GC-05-137-3-39

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

7._PA_156_[PER] GC-05-137-3-39

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

8._PA_156_[PER] GC-05-137-3-39

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

9._PA_156_[PER] RUQ_1531

identical
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

10._PA_156_[PER]

identical
38 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row1 C0184 28
 Dapeng Zhang, 2016

11._PA_156_[PER]

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

12._PA_156_[PER] GC-05-137-3-39

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

13._PA_186_[PER]

identical
37 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 446
 Dapeng Zhang, 2014

14._PA_156_[PER] RUQ_1531

identical
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

15._PA_39_[PER] RUQ_1567

93.5 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

16._EET_400_[ECU]

93.4 %
38 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot85/Trial II 2B
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP193 34TcSNP151 35TcSNP150
36TcSNP144 37TcSNP32 38TcSNP25