SNP Profiles matching PA 150 [PER]

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CTGGGGCCTTACCTTTCCCCAAAGCCAG
1._EET_272_[ECU]___
CTGGGGCCTTACCTTTCCCCAAAGCCAG
2._EET_272_[ECU]___
CTGGGGCCTTACCTTTCCCCAAAGCCAG
3._PA_150_[PER]___
CTGGGGCCTTACCTTTCCCCAAAGCCAG
4._PA_150_[PER]___
CTGGGGCCTTACCTTTCCCCAAAGCCAG
5._PA_150_[PER]___
CTGGGGCCTTACCTTTCCCCAAAGCCAG
6._PA_150_[PER]___
CTGGGGCCTTACCTTTCCCCAAAGCCAG
7._PA_150_[PER]___
CTGGGGCCTTACCTTTCCCCAAAGCCAG
8._PA_150_[PER]___
CTGGGGCCTTACCTTTCCCCAAAGCCAG
9._PA_150_[PER]___
CTGGGGCCTTACCTTTCCCCAAAGCCAG
10._EET_272_[ECU]___
CTGGGGCCTTACCTTTCCCCAAAGCCAG
11._EET_272_[ECU]___
CTGGGGCCTTACCTTTCCCCAAAGCCAG
12._MOQ_6_/95___
__GGGGCC______TT________CCAG
13._EQX_/O_[CHA]___
CCGGGGCCTTACCCTTCCCCAAAGCC__
14._EQX_/O_[CHA]___
CCGGGGCCTTACCCTTCCCCAAAGCC__
15._CRUZ_7_/14___
__AGCGCC______TT________CCAG
16._PA_56_[PER]___
__GGCGCT______TT________CCAG
17._PA_71_[PER]___
__AGCGCC______TT________CCAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CTAACCCTCCGGGGAGTTCCCGGTCCAC
1._EET_272_[ECU]___
CTAACCCTCCGGGGAGTTCCCGGTCCAC
2._EET_272_[ECU]___
CTAACCCTCCGGGGAGTTCCCGGTCCAC
3._PA_150_[PER]___
CTAACCCTCCGGGGAGTTCCCGGTCCAC
4._PA_150_[PER]___
CTAACCCTCCGGGGAGTTCCCGGTCCAC
5._PA_150_[PER]___
CTAACCCTCCGGGGAGTTCCCGGTCCAC
6._PA_150_[PER]___
CTAACCCTCCGGGGAGTTCCCGGTCCAC
7._PA_150_[PER]___
CTAACCCTCCGGGGAGTTCCCGGTCCAC
8._PA_150_[PER]___
CTAACCCTCCGGGGAGTTCCCGGTCCAC
9._PA_150_[PER]___
CTAACCCTCCGGGGAGTTCCCGGTCCAC
10._EET_272_[ECU]___
CTAACCCTCCGGGGAGTTCCCGGTCCAC
11._EET_272_[ECU]___
CTAACCCTCCGGGGAGTTCCCGGTCCAC
12._MOQ_6_/95___
________CCGGGG__TTCCCGGTCCAC
13._EQX_/O_[CHA]___
CTAACCCTCCGGGGAGTTCCCGGTCCAC
14._EQX_/O_[CHA]___
CTAACCCTCCGGGGAGTTCCCGGTCCAC
15._CRUZ_7_/14___
________CCGGGG__TTCCCGGTCTAC
16._PA_56_[PER]___
________CCGGGG__TTCCCGGTCTAC
17._PA_71_[PER]___
________CCGGGG__TTCCCGGTCTAC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AAGGAACCAGCCAACCGGCCATGGX_XX_X
1._EET_272_[ECU]___
AAGGAACCAGCCAACCGGCCATGGX_XX_X
2._EET_272_[ECU]___
AAGGAACCAGCCAACCGGCCATGGX_XX_X
3._PA_150_[PER]___
AAGGAACCAGCCAACCGGCCATGGX_XX_X
4._PA_150_[PER]___
AAGGAACCAGCCAACCGGCCATGGX_XX_X
5._PA_150_[PER]___
AAGGAACCAGCCAACCGGCCATGGX_XX_X
6._PA_150_[PER]___
AAGGAACCAGCCAACCGGCCATGGX_XX_X
7._PA_150_[PER]___
AAGGAACCAGCCAACCGGCCATGGX_XX_X
8._PA_150_[PER]___
AAGGAACCAGCCAACCGGCCATGGX_XX_X
9._PA_150_[PER]___
AAGGAACCAGCCAACCGGCCATGGX_XX_X
10._EET_272_[ECU]___
AAGGAACCAGCC__CCGGCCATGGX_XX_X
11._EET_272_[ECU]___
AAGGAACCAGCC__CCGGCCATGGX_XX_X
12._MOQ_6_/95___
AA__AACCAGCCACCCGGCC____X_XX_X
13._EQX_/O_[CHA]___
AAGGAACCAGCCCCCCGGCCATGGX_XX_X
14._EQX_/O_[CHA]___
AAGGAACCAGCCCCCCGGCCATGGX_XX_X
15._CRUZ_7_/14___
AA__AACCAGCCAACCGGAC____X_XX_X
16._PA_56_[PER]___
AA__AACCAGCCACCCGGCC____X_XX_X
17._PA_71_[PER]___
AA__AACCAGCCAACCGGAC____X_XX_X

Input profile: PA_150_[PER]

 
Mars Center for Cocoa Science, Brazil
Location: 1209 2
 Dapeng Zhang, 2016

1._EET_272_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 8
 Dapeng Zhang, 2016

2._EET_272_[ECU] GC-03-032-3-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

3._PA_150_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 7 > FP
 Dapeng Zhang, 2016

4._PA_150_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 10
 Dapeng Zhang, 2016

5._PA_150_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 3
 Dapeng Zhang, 2016

6._PA_150_[PER] GC-01-034-2-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

7._PA_150_[PER] GC-01-034-2-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

8._PA_150_[PER] GC-01-034-2-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP4
 Mars, 2018

9._PA_150_[PER] GC-01-034-2-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

10._EET_272_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 7
 Dapeng Zhang, 2016

11._EET_272_[ECU] GC-03-032-3-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

12._MOQ_6_/95 RUQ_1436

97.9 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

13._EQX_/O_[CHA]

94.9 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7421 2
 Dapeng Zhang, 2016

14._EQX_/O_[CHA] GC-07-077-4-21

94.9 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

15._CRUZ_7_/14 RUQ_1569

91.7 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

16._PA_56_[PER] RUQ_32

91.7 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

17._PA_71_[PER] RUQ_1564

91.7 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25