SNP Profiles matching PA 121

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 Key

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_Input profile
CCGGCGCTTTCCGTTTCCTTAGCCAGCT
1._B_12_/1_[POU]
CCGGCGCTTTCCGTTTCCTTAGCCAGCT
2._B_12_/1_[POU]
CCGGCGCTTTCCGTTTCCTTAGCCAGCT
3._B_12_/1_[POU]
CCGGCGCTTTCCGTTTCCTTAGCCAGCT
4._B_12_/1_[POU]
CCGGCGCTTTCCGTTTCCTTAGCCAGCT
5._GC-05-093-2-44
CCGGCGCTTTCCGTTTCCTTAGCCAGCT
6._GC-05-093-2-44
CCGGCGCTTTCCGTTTCCTTAGCCAGCT
7._GC-05-093-2-44
CCGGCGCTTTCCGTTTCCTTAGCCAGCT
8._GC-05-093-2-44
CCGGCGCTTTCCGTTTCCTTAGCCAGCT
9._GC-05-011-1-11
CCGGCGCTTTCCGTTTCCTTAGCCAGCT
10._B_12_/1_[POU]
CCGGCGCTTTCCGTTTCCTTAGCCAGCT
11._B_12_/1_[POU]
CCGGCGCTTTCCGTTTCCTTAGCCAGCT
12._GC-05-093-2-44
CCGGCGCTTTCCGTTTCCTTAGCCAGCT
13._RUQ_1541
__GGCGCT____GT________CCAG__
14._RUQ_1541
CCGGCGCTTTCCGTTTCCTTAGCCAGCT
 1516171819202122232425262728
_Input profile
AAGGCTTTGGGTAACCCCGGGTCTCCAA
1._B_12_/1_[POU]
AAGGCTTTGGGTAACCCCGGGTCTCCAA
2._B_12_/1_[POU]
AAGGCTTTGGGTAACCCCGGGTCTCCAA
3._B_12_/1_[POU]
AAGGCTTTGGGTAACCCCGGGTCTCCAA
4._B_12_/1_[POU]
AAGGCTTTGGGTAACCCCGGGTCTCCAA
5._GC-05-093-2-44
AAGGCTTTGGGTAACCCCGGGTCTCCAA
6._GC-05-093-2-44
AAGGCTTTGGGTAACCCCGGGTCTCCAA
7._GC-05-093-2-44
AAGGCTTTGGGTAACCCCGGGTCTCCAA
8._GC-05-093-2-44
AAGGCTTTGGGTAACCCCGGGTCTCCAA
9._GC-05-011-1-11
AAGGCTTTGGGTAACCCCGGGTCTCCAA
10._B_12_/1_[POU]
AAGGCTTTGGGTAACCCCGGGTCTCCAA
11._B_12_/1_[POU]
AAGGCTTTGGGTAACCCCGGGTCTCCAA
12._GC-05-093-2-44
AAGGCTTTGGGTAACCCCGGGTCTCCAA
13._RUQ_1541
______TTGGGT__CCCCGGGTCTCCAA
14._RUQ_1541
AAGGCTCTGGGTAACCCCGGGTCTCCAA
 2930313233343536373839   
_Input profile
AGTTCCAACCAACTGTCCAAGGX_XX_XX_X
1._B_12_/1_[POU]
AGTTCCAACCAACTGTCCAAGGX_XX_XX_X
2._B_12_/1_[POU]
AGTTCCAACCAACTGTCCAAGGX_XX_XX_X
3._B_12_/1_[POU]
AGTTCCAACCAACTGTCCAAGGX_XX_XX_X
4._B_12_/1_[POU]
AGTTCCAACCAACTGTCCAAGGX_XX_XX_X
5._GC-05-093-2-44
AGTTCCAACCAACTGTCCAAGGX_XX_XX_X
6._GC-05-093-2-44
AGTTCCAACCAACTGTCCAAGGX_XX_XX_X
7._GC-05-093-2-44
AGTTCCAACCAACTGTCCAAGGX_XX_XX_X
8._GC-05-093-2-44
AGTTCCAACCAACTGTCCAAGGX_XX_XX_X
9._GC-05-011-1-11
AGTTCCAACCAACTGTCCAAGGX_XX_XX_X
10._B_12_/1_[POU]
AGTTCCAACCAACTGTCCAAGGX_XX_XX_X
11._B_12_/1_[POU]
AGTTCCAACCAA__GTCCAAGGX_XX_XX_X
12._GC-05-093-2-44
AGTTCCAACCAA__GTCCAAGGX_XX_XX_X
13._RUQ_1541
__TTCCAACCAACTGTCC____X_XX_XX_X
14._RUQ_1541
AGTTCCAACCAACTGTCCAAGGX_XX_XX_X

Input profile: PA_121_[PER]

 
Mars Center for Cocoa Science, Brazil
Location: 5111 2 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

1._B_12_/1_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5244 1 > FP
 Dapeng Zhang, 2016

2._B_12_/1_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5244 5
 Dapeng Zhang, 2016

3._B_12_/1_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5244 4
 Dapeng Zhang, 2016

4._B_12_/1_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5244 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

5._B_12_/1_[POU] GC-05-093-2-44

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

6._B_12_/1_[POU] GC-05-093-2-44

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

7._B_12_/1_[POU] GC-05-093-2-44

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

8._B_12_/1_[POU] GC-05-093-2-44

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

9._PA_121_[PER] GC-05-011-1-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP4
 Mars, 2018

10._B_12_/1_[POU]

identical
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F461 T10
 Dapeng Zhang, 2016

11._B_12_/1_[POU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5244 3
 Dapeng Zhang, 2016

12._B_12_/1_[POU] GC-05-093-2-44

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

13._B_12_/1_[POU] RUQ_1541

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

14._B_12_/1_[POU] RUQ_1541

98.7 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25