SNP Profiles matching PA 121 [PER]

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 Key

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_Input profile
CTGGGGCTTTACTTTTCCCCAAGGCCAG
1._PA_121_[PER]
CTGGGGCTTTACTTTTCCCCAAGGCCAG
2._GC-05-011-1-11
CTGGGGCTTTACTTTTCCCCAAGGCCAG
3._GC-05-011-1-11
CTGGGGCTTTACTTTTCCCCAAGGCCAG
4._ICS_1
CTGGGGCTTTACTTTTCCCCAAGGCCAG
5._RUQ_1059
CTGGGGCTTTACTTTTCCCCAAGGCCAG
6._PA_121_[PER]
CTGGGGCTTTACTTTTCCCCAAGGCCAG
7._PA_121_[PER]
CTGGGGCTTTACTTTTCCCCAAGGCCAG
8._PA_121_[PER]
CTGGGGCTTTACTTTTCCCCAAGGCCAG
9._GC-05-011-1-11
CTGGGGCTTTACTTTTCCCCAAGGCCAG
10._PA_121_[PER]
CTGGGGCTTTACTTTTCC__AAGGCCAG
11._RUQ_1059
__GGGGCT______TT________CCAG
12._RUQ_952
__GGGGCT______TT________CCAG
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_Input profile
TTAACGTTCCGGGGAATTCCCGGGCTAA
1._PA_121_[PER]
TTAACGTTCCGGGGAATTCCCGGGCTAA
2._GC-05-011-1-11
TTAACGTTCCGGGGAATTCCCGGGCTAA
3._GC-05-011-1-11
TTAACGTTCCGGGGAATTCCCGGGCTAA
4._ICS_1
TTAACGTTCCGGGGAATTCCCGGGCTAA
5._RUQ_1059
TTAACGTTCCGGGGAATTCCCGGGCTAA
6._PA_121_[PER]
TTAACGTTCCGGGGAATTCCCGGGCTAA
7._PA_121_[PER]
TTAACGTTCCGGGGAATTCCCGGGCTAA
8._PA_121_[PER]
TTAACGTTCCGGGGAATTCCCGGGCTAA
9._GC-05-011-1-11
TTAACGTTCCGGGGAATTCCCGGGCTAA
10._PA_121_[PER]
TTAACGTTCCGGGGAATTCCCGGGCTAA
11._RUQ_1059
________CCGGGG__TTCCCGGGCTAA
12._RUQ_952
________CCGGGG__TTCCCGGGCTAA
 293031323334353637383940  
_Input profile
AGGGAACCAACCAACCGTACATGGX_XX_X
1._PA_121_[PER]
AGGGAACCAACCAACCGTACATGGX_XX_X
2._GC-05-011-1-11
AGGGAACCAACCAACCGTACATGGX_XX_X
3._GC-05-011-1-11
AGGGAACCAACCAACCGTACATGGX_XX_X
4._ICS_1
AGGGAACCAACCAACCGTACATGGX_XX_X
5._RUQ_1059
AGGGAACCAACCAACCGTACATGGX_XX_X
6._PA_121_[PER]
AGGGAACCAACCAACCGTACATGGX_XX_X
7._PA_121_[PER]
AGGGAACCAACCAACCGTACATGGX_XX_X
8._PA_121_[PER]
AGGGAACCAACCAA__GTACATGGX_XX_X
9._GC-05-011-1-11
AGGGAACCAACCAA__GTACATGGX_XX_X
10._PA_121_[PER]
AGGGAACCAA__AACCGTACATGGX_XX_X
11._RUQ_1059
AG__AACCAACCAACCGTAC____X_XX_X
12._RUQ_952
AA__AACCGGCCAACTGTAC____X_XX_X

Input profile: PA_121_[PER]

 
Mars Center for Cocoa Science, Brazil
Location: 5111 1 > FP
 Dapeng Zhang, 2016

1._PA_121_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5111 3
 Dapeng Zhang, 2016

2._PA_121_[PER] GC-05-011-1-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

3._PA_121_[PER] GC-05-011-1-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

4._ICS_1

identical
40 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

5._PA_121_[PER] RUQ_1059

identical
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

6._PA_121_[PER]

identical
40 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P60 102
 Dapeng Zhang, 2016

7._PA_121_[PER]

identical
40 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: C0233
 Dapeng Zhang, 2016

8._PA_121_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5111 5 > FP
 Dapeng Zhang, 2016

9._PA_121_[PER] GC-05-011-1-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP3
 Mars, 2018

10._PA_121_[PER]

identical
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D393
 Dapeng Zhang, 2016

11._PA_121_[PER] RUQ_1059

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

12._PA_289_[PER] RUQ_952

91.7 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25