SNP Profiles matching ICS 1

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTAAGGCTTTAACCTTCTTTAAAATTAG
1._OC_61_[VEN]___
TTAAGGCTTTAACCTTCTTTAAAATTAG
2._OC_61_[VEN]___
TTAAGGCTTTAACCTTCTTTAAAATTAG
3._OC_61_[VEN]___
TTAAGGCTTTAACCTTCTTTAAAATTAG
4._OC_61_[VEN]___
TTAAGGCTTTAACCTTCTTTAAAATTAG
5._OC_61_[VEN]___
TTAAGGCTTTAACCTTCTTTAAAATTAG
6._OC_61_[VEN]___
TTAAGGCTTTAACCTTCTTTAAAATTAG
7._OC_61_[VEN]___
TTAAGGCTTTAACCTTCTTTAAAATTAG
8._OC_61_[VEN]___
TTAAGGCTTTAACCTTCTTTAAAATTAG
9._OC_61_[VEN]___
TTAAGGCTTTAACCTTCTTTAAAATTAG
10._OC_61_[VEN]___
TTAAGGCTTTAACCTTCTTTAAAATTAG
11._OC_61_[VEN]___
TTAAGGCTTTAACCTTCTTTAAAATTAG
12._OC_61_[VEN]___
TTAAGGCTTTAACCTTCTTTAAAATTAG
13._OC_61_[VEN]___
TTAAGGCTTTAACCTTCTTTAAAATTAG
14._OC_61_[VEN]___
TTAAGGCTTTAACCTTCTTTAAAATTAG
15._OC_61_[VEN]___
TTAAGGCTTTAACCTTCTTTAAAATTAG
16._OC_61_[VEN]___
TTAAGGCTTTAACCTTCTTTAAAATTAG
17._OC_61_[VEN]___
TTAAGGCTTTAACCTTCTTTAAAATTAG
18._ICS_1___
TTAAGGCTTTAACCTTCTTTAAAATTAG
19._MARPER_45___
TTAAGGCT__AACC__CT__AAAA__AG
20._ICS_1___
TTAAGGCTTTAACCTTCTTTAAAATTAG
21._ICS_1___
TTAAGGCTTTAACCTTCTTTAAAATTAG
22._ICS_1___
TTAAGGCTTTAACCTTCTTTAAAATTAG
23._ICS_1___
TTAAGGCTTTAACCTTCTTTAAAATTAG
24._ICS_1___
TTAAGGCTTTAACCTTCTTTAAAATTAG
25._ICS_1___
TTAAGGCTTTAACCTTCTTTAAAATTAG
26._ICS_1___
TTAAGGCTTTAACCTTCTTTAAAATTAG
27._ICS_1___
TTAAGGCTTTAACCTTCTTTAAAATTAG
28._ICS_1___
TTAAGGCTTTAACCTTCTTTAAAATTAG
29._ICS_1___
TTAAGGCTTTAACCTTCTTTAAAATTAG
30._PA_70_[PER]___
TTAAGGCTTTAACCTTCTTTAAAATTAG
31._PA_70_[PER]___
TTAAGGCTTTAACCTTCTTTAAAATTAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
TTAAGGTTCCCGGGGGTTCCCCTTTTCC
1._OC_61_[VEN]___
TTAAGGTTCCCGGGGGTTCCCCTTTTCC
2._OC_61_[VEN]___
TTAAGGTTCCCGGGGGTTCCCCTTTTCC
3._OC_61_[VEN]___
TTAAGGTTCCCGGGGGTTCCCCTTTTCC
4._OC_61_[VEN]___
TTAAGGTTCCCGGGGGTTCCCCTTTTCC
5._OC_61_[VEN]___
TTAAGGTTCCCGGGGGTTCCCCTTTTCC
6._OC_61_[VEN]___
TTAAGGTTCCCGGGGGTTCCCCTTTTCC
7._OC_61_[VEN]___
TTAAGGTTCCCGGGGGTTCCCCTTTTCC
8._OC_61_[VEN]___
TTAAGGTTCCCGGGGGTTCCCCTTTTCC
9._OC_61_[VEN]___
TTAAGGTTCCCGGGGGTTCCCCTTTTCC
10._OC_61_[VEN]___
TTAAGGTTCCCGGGGGTTCCCCTTTTCC
11._OC_61_[VEN]___
TTAAGGTTCCCGGGGGTTCCCCTTTTCC
12._OC_61_[VEN]___
TTAAGGTTCCCGGGGGTTCCCCTTTTCC
13._OC_61_[VEN]___
TTAAGGTTCCCGGGGGTTCCCCTTTTCC
14._OC_61_[VEN]___
TTAAGGTTCCCGGGGGTTCCCCTTTTCC
15._OC_61_[VEN]___
TTAAGGTTCCCGGGGGTTCCCCTTTTCC
16._OC_61_[VEN]___
TTAAGGTTCCCGGGGGTTCCCCTTTTCC
17._OC_61_[VEN]___
TTAAGGTTCCCGGGGGTTCCCCTTTTCC
18._ICS_1___
TTAAGGTTCC__GTGGTTACCCTTTTCC
19._MARPER_45___
TTAAGG__CC__GTGGTT__CC__TTCC
20._ICS_1___
TTAAGGTTCCCGGTGGTTACCCTTTTCC
21._ICS_1___
TTAAGGTTCCCGGTGGTTACCCTTTTCC
22._ICS_1___
TTAAGGTTCCCGGTGGTTACCCTTTTCC
23._ICS_1___
TTAAGGTTCCCGGTGGTTACCCTTTTCC
24._ICS_1___
TTAAGGTTCCCGGTGGTTACCCTTTTCC
25._ICS_1___
TTAAGGTTCCCGGTGGTTACCCTTTTCC
26._ICS_1___
TTAAGGTTCCCGGTGGTTACCCTTTTCC
27._ICS_1___
TTAAGGTTCCCGGTGGTTACCCTTTTCC
28._ICS_1___
TTAAGGTTCCCGGTGGTTACCCTTTTCC
29._ICS_1___
TTAAGGTTCCCGGTGGTTACCCTTTTCC
30._PA_70_[PER]___
TTAAGGTTCCCGGTGGTTACCCTTTTCC
31._PA_70_[PER]___
TTAAGGTTCCCGGTGGTTACCCTTTTCC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AAGGAACCAGCGAACCTTACTTGGX_XX_X
1._OC_61_[VEN]___
AAGGAACCAGCGAACCTTACTTGGX_XX_X
2._OC_61_[VEN]___
AAGGAACCAGCGAACCTTACTTGGX_XX_X
3._OC_61_[VEN]___
AAGGAACCAGCGAACCTTACTTGGX_XX_X
4._OC_61_[VEN]___
AAGGAACCAGCGAACCTTCCTTGGX_XX_X
5._OC_61_[VEN]___
AAGGAACCAGCGAACCTTCCTTGGX_XX_X
6._OC_61_[VEN]___
AAGGAACCAGCGAACCTTCCTTGGX_XX_X
7._OC_61_[VEN]___
AAGGAACCAGCGAACCTTCCTTGGX_XX_X
8._OC_61_[VEN]___
AAGGAACCAGCGAACCTTCCTTGGX_XX_X
9._OC_61_[VEN]___
AAGGAACCAGCGAACCTTCCTTGGX_XX_X
10._OC_61_[VEN]___
AAGGAACCAGCGAACCTTCCTTGGX_XX_X
11._OC_61_[VEN]___
AAGGAACCAGCGAACCTTCCTTGGX_XX_X
12._OC_61_[VEN]___
AAGGAACCAGCGAACCTTCCTTGGX_XX_X
13._OC_61_[VEN]___
AAGGAACCAGCGAACCTTCCTTGGX_XX_X
14._OC_61_[VEN]___
AAGGAACCAGCGAACCTTCCTTGGX_XX_X
15._OC_61_[VEN]___
AAGGAACCAGCGAACCTTCCTTGGX_XX_X
16._OC_61_[VEN]___
AAGGAACCAGCGAACCTTCCTTGGX_XX_X
17._OC_61_[VEN]___
AAGGAACCAGCGAACCTTCCTTGGX_XX_X
18._ICS_1___
__GGATCTAGCGAACCGTAAATGGX_XX_X
19._MARPER_45___
AGGG__CTAG______GT__AT__X_XX_X
20._ICS_1___
AGGGATCTAGCGAACCGTAAATGGX_XX_X
21._ICS_1___
AGGGATCTAGCGAACCGTAAATGGX_XX_X
22._ICS_1___
AGGGATCTAGCGAACCGTAAATGGX_XX_X
23._ICS_1___
AGGGATCTAGCGAACCGTAAATGGX_XX_X
24._ICS_1___
AGGGATCTAGCGAACCGTAAATGGX_XX_X
25._ICS_1___
AGGGATCTAGCGAACCGTAAATGGX_XX_X
26._ICS_1___
AGGGATCTAGCGAACCGTAAATGGX_XX_X
27._ICS_1___
AGGGATCTAGCGAACCGTAAATGGX_XX_X
28._ICS_1___
AGGGATCTAGCGAACCGTAAATGGX_XX_X
29._ICS_1___
AGGGATCTAGCGAACCGTAAATGGX_XX_X
30._PA_70_[PER]___
AGGGATCTAGCGAACCGTAAATGGX_XX_X
31._PA_70_[PER]___
AGGGATCTAGCGAACCGTAAATGGX_XX_X

Input profile: OC_61_[VEN]

 
Mars Center for Cocoa Science, Brazil
Location: 5139 2
 Dapeng Zhang, 2016

1._OC_61_[VEN]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5139 1 > FP
 Dapeng Zhang, 2016

2._OC_61_[VEN] GC-05-039-1-39

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

3._OC_61_[VEN] GC-05-039-1-39

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

4._OC_61_[VEN]

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5139 5 > FP
 Dapeng Zhang, 2016

5._OC_61_[VEN]

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5139 4 > FP
 Dapeng Zhang, 2016

6._OC_61_[VEN]

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5139 3 > FP
 Dapeng Zhang, 2016

7._OC_61_[VEN]

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5140 1 > FP
 Dapeng Zhang, 2016

8._OC_61_[VEN]

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5140 5 > FP
 Dapeng Zhang, 2016

9._OC_61_[VEN]

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5140 4 > FP
 Dapeng Zhang, 2016

10._OC_61_[VEN]

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5140 3 > FP
 Dapeng Zhang, 2016

11._OC_61_[VEN] GC-05-039-1-39

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

12._OC_61_[VEN] GC-05-039-1-39

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

13._OC_61_[VEN] GC-05-039-1-39

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP3
 Mars, 2018

14._OC_61_[VEN] GC-05-040-1-40

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

15._OC_61_[VEN] GC-05-040-1-40

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

16._OC_61_[VEN] GC-05-040-1-40

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

17._OC_61_[VEN] GC-05-040-1-40

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

18._ICS_1

90.8 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block4
 Dapeng Zhang, 2016

19._MARPER_45

90.4 %
26 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 251A
 Dapeng Zhang, 2014

20._ICS_1

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 8
 Dapeng Zhang, 2016

21._ICS_1

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 6
 Dapeng Zhang, 2016

22._ICS_1

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 5
 Dapeng Zhang, 2016

23._ICS_1

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 3
 Dapeng Zhang, 2016

24._ICS_1

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 1
 Dapeng Zhang, 2016

25._ICS_1 NA

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

26._ICS_1 NA

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

27._ICS_1 NA

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

28._ICS_1 NA

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

29._ICS_1 NA

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

30._PA_70_[PER]

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4317 2 > FP
 Dapeng Zhang, 2016

31._PA_70_[PER] GC-04-053-3-17

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1 (roxo)
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25