SNP Profiles matching NA 45

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 Key

 1234567891011121314
_Input profile
CCAACGTTTTCTTTCCCCAAGGCCAGTT
1._NA_45
CCAACGTTTTCTTTCCCCAAGGCCAGTT
2._NA_45
CCAACGTTTTCTTTCCCCAAGGCCAGTT
3._NA_45
CCAACGTTTTCTTTCCCCAAGGCCAGTT
4._NA_45
CCAACGTTTTCTTTCCCCAAGGCCAGTT
5._NA_45
CCAACGTTTTCTTTCCCCAAGGCCAGTT
6._NA_45
CCAACGTTTTCTTTCCCCAAGGCCAGTT
7._NA_45
CCAACGTTTTCTTTCCCCAAGGCCAGTT
8._GC-01-111-6-08
CCAACGTTTTCTTTCCCCAAGGCCAGTT
9._GC-01-111-6-08
CCAACGTTTTCTTTCCCCAAGGCCAGTT
10._GC-01-111-6-08
CCAACGTTTTCTTTCCCCAAGGCCAGTT
11._GC-01-111-6-08
CCAACGTTTTCTTTCCCCAAGGCCAGTT
12._GC-01-111-6-08
CCAACGTTTTCTTTCCCCAAGGCCAGTT
13._GC-01-111-6-08
CCAACGTTTTCTTTCCCCAAGGCCAGTT
14._GC-01-111-6-08
CCAACGTTTTCTTTCCCCAAGGCCAGTT
15._GC-01-111-6-08
CCAACGTTTTCTTTCCCCAAGGCCAGTT
16._NA_45
CCAACGTTTTCTTTCCCCAAGGCCAGTT
17._SPA_9_[COL]
CCAACGTTTTTTGTCCCCAAGGCCAGTT
18._RUQ_691
__AACGTT____GT________CCAG__
19._MATINA_2_/8
CCAACGTTTTTTGTCCCTAAGGCCAGTT
 1516171819202122232425262728
_Input profile
AAGGCTCCCGGGAACCAAGGGTTTCCAA
1._NA_45
AAGGCTCCCGGGAACCAAGGGTTTCCAA
2._NA_45
AAGGCTCCCGGGAACCAAGGGTTTCCAA
3._NA_45
AAGGCTCCCGGGAACCAAGGGTTTCCAA
4._NA_45
AAGGCTCCCGGGAACCAAGGGTTTCCAA
5._NA_45
AAGGCTCCCGGGAACCAAGGGTTTCCAA
6._NA_45
AAGGCTCCCGGGAACCAAGGGTTTCCAA
7._NA_45
AAGGCTCCCGGGAACCAAGGGTTTCCAA
8._GC-01-111-6-08
AAGGCTCCCGGGAACCAAGGGTTTCCAA
9._GC-01-111-6-08
AAGGCTCCCGGGAACCAAGGGTTTCCAA
10._GC-01-111-6-08
AAGGCTCCCGGGAACCAAGGGTTTCCAA
11._GC-01-111-6-08
AAGGCTCCCGGGAACCAAGGGTTTCCAA
12._GC-01-111-6-08
AAGGCTCCCGGGAACCAAGGGTTTCCAA
13._GC-01-111-6-08
AAGGCTCCCGGGAACCAAGGGTTTCCAA
14._GC-01-111-6-08
AAGGCTCCCGGGAACCAAGGGTTTCCAA
15._GC-01-111-6-08
AAGGCTCCCGGGAACCAAGGGTTTCCAA
16._NA_45
AAGGCTCCCGGGAACCAAGGGTTTCCAA
17._SPA_9_[COL]
AAGGCCCCCGGGAACCAAGGGGTTCCAA
18._RUQ_691
______CCCGGG__CCAAGGGGTTCCAA
19._MATINA_2_/8
AAGGCCCCCG__AACCAAGGGGTTCCAA
 29303132333435363738    
_Input profile
GGAACTAGCGAAGGACTTGGX_XX_XX_XX_X
1._NA_45
GGAACTAGCGAAGGACTTGGX_XX_XX_XX_X
2._NA_45
GGAACTAGCGAAGGACTTGGX_XX_XX_XX_X
3._NA_45
GGAACTAGCGAAGGACTTGGX_XX_XX_XX_X
4._NA_45
GGAACTAGCGAAGGACTTGGX_XX_XX_XX_X
5._NA_45
GGAACTAGCGAAGGACTTGGX_XX_XX_XX_X
6._NA_45
GGAACTAGCGAAGGACTTGGX_XX_XX_XX_X
7._NA_45
GGAACTAGCGAAGGACTTGGX_XX_XX_XX_X
8._GC-01-111-6-08
GGAACTAGCGAAGGACTTGGX_XX_XX_XX_X
9._GC-01-111-6-08
GGAACTAGCGAAGGACTTGGX_XX_XX_XX_X
10._GC-01-111-6-08
GGAACTAGCGAAGGACTTGGX_XX_XX_XX_X
11._GC-01-111-6-08
GGAACTAGCGAAGGACTTGGX_XX_XX_XX_X
12._GC-01-111-6-08
GGAACTAGCGAAGGACTTGGX_XX_XX_XX_X
13._GC-01-111-6-08
GGAACTAGCGAAGGACTTGGX_XX_XX_XX_X
14._GC-01-111-6-08
GGAACTAGCGAAGGACTTGGX_XX_XX_XX_X
15._GC-01-111-6-08
GGAACTAGCGAAGGACTTGGX_XX_XX_XX_X
16._NA_45
GGAACTAGCGAAGGACTTGGX_XX_XX_XX_X
17._SPA_9_[COL]
GGAACTAACGACGGACTTGGX_XX_XX_XX_X
18._RUQ_691
__AACTAACGACGGAC____X_XX_XX_XX_X
19._MATINA_2_/8
GGAACTAA__ACGGACTTGGX_XX_XX_XX_X

Input profile: NA_45

 
Mars Center for Cocoa Science, Brazil
Location: 1608 14 > F
 Dapeng Zhang, 2016

1._NA_45

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 3 > FP
 Dapeng Zhang, 2016

2._NA_45

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 11 > F
 Dapeng Zhang, 2016

3._NA_45

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 1 > FP
 Dapeng Zhang, 2016

4._NA_45

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 10
 Dapeng Zhang, 2016

5._NA_45

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 9
 Dapeng Zhang, 2016

6._NA_45

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 4
 Dapeng Zhang, 2016

7._NA_45

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

8._NA_45 GC-01-111-6-08

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

9._NA_45 GC-01-111-6-08

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

10._NA_45 GC-01-111-6-08

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

11._NA_45 GC-01-111-6-08

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

12._NA_45 GC-01-111-6-08

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

13._NA_45 GC-01-111-6-08

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

14._NA_45 GC-01-111-6-08

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP2
 Mars, 2018

15._NA_45 GC-01-111-6-08

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

16._NA_45

identical
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 673
 Dapeng Zhang, 2016

17._SPA_9_[COL]

92.1 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 2 X1 Y17
 Dapeng Zhang, 2016

18._SPA_16_[COL] RUQ_691

91.3 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

19._MATINA_2_/8

90.3 %
36 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B B106 T16
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP150
36TcSNP144 37TcSNP32 38TcSNP25