SNP Profiles matching NA 45

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 Key

 1234567891011121314
_Input profile
CCAACGTTTTCTTTCCCCAAGGCCAGTT
1._NA_45
CCAACGTTTTCTTTCCCCAAGGCCAGTT
2._NA_45
CCAACGTTTTCTTTCCCCAAGGCCAGTT
3._NA_45
CCAACGTTTTCTTTCCCCAAGGCCAGTT
4._NA_45
CCAACGTTTTCTTTCCCCAAGGCCAGTT
5._NA_45
CCAACGTTTTCTTTCCCCAAGGCCAGTT
6._GC-01-111-6-08
CCAACGTTTTCTTTCCCCAAGGCCAGTT
7._GC-01-111-6-08
CCAACGTTTTCTTTCCCCAAGGCCAGTT
8._GC-01-111-6-08
CCAACGTTTTCTTTCCCCAAGGCCAGTT
9._GC-01-111-6-08
CCAACGTTTTCTTTCCCCAAGGCCAGTT
10._GC-01-111-6-08
CCAACGTTTTCTTTCCCCAAGGCCAGTT
11._GC-01-111-6-08
CCAACGTTTTCTTTCCCCAAGGCCAGTT
12._NA_45
CCAACGTTTTCTTTCCCCAAGGCCAGTT
13._NA_45
CCAACGTTTTCTTTCCCCAAGGCCAGTT
14._GC-01-111-6-08
CCAACGTTTTCTTTCCCCAAGGCCAGTT
15._NA_45
CCAACGTTTTCTTTCCCCAAGGCCAGTT
16._GC-01-111-6-08
CCAACGTTTTCTTTCCCCAAGGCCAGTT
17._SPA_9_[COL]
CCAACGTTTTTTGTCCCCAAGGCCAGTT
 1516171819202122232425262728
_Input profile
AAGGCTCCCGGGAACCAAGGGTTTCCAA
1._NA_45
AAGGCTCCCGGGAACCAAGGGTTTCCAA
2._NA_45
AAGGCTCCCGGGAACCAAGGGTTTCCAA
3._NA_45
AAGGCTCCCGGGAACCAAGGGTTTCCAA
4._NA_45
AAGGCTCCCGGGAACCAAGGGTTTCCAA
5._NA_45
AAGGCTCCCGGGAACCAAGGGTTTCCAA
6._GC-01-111-6-08
AAGGCTCCCGGGAACCAAGGGTTTCCAA
7._GC-01-111-6-08
AAGGCTCCCGGGAACCAAGGGTTTCCAA
8._GC-01-111-6-08
AAGGCTCCCGGGAACCAAGGGTTTCCAA
9._GC-01-111-6-08
AAGGCTCCCGGGAACCAAGGGTTTCCAA
10._GC-01-111-6-08
AAGGCTCCCGGGAACCAAGGGTTTCCAA
11._GC-01-111-6-08
AAGGCTCCCGGGAACCAAGGGTTTCCAA
12._NA_45
AAGGCTCCCGGGAACCAAGGGTTTCCAA
13._NA_45
AAGGCTCCCGGGAACCAAGGGTTTCCAA
14._GC-01-111-6-08
AAGGCTCCCGGGAACCAAGGGTTTCCAA
15._NA_45
AAGGCTCCCGGGAACCAAGGGTTTCCAA
16._GC-01-111-6-08
AAGGCTCCCGGGAACCAAGGGTTTCCAA
17._SPA_9_[COL]
AAGGCCCCCGGGAACCAAGGGGTTCCAA
 2930313233343536373839   
_Input profile
GGAACTAGCGAACCGGACTTGGX_XX_XX_X
1._NA_45
GGAACTAGCGAACCGGACTTGGX_XX_XX_X
2._NA_45
GGAACTAGCGAACCGGACTTGGX_XX_XX_X
3._NA_45
GGAACTAGCGAACCGGACTTGGX_XX_XX_X
4._NA_45
GGAACTAGCGAACCGGACTTGGX_XX_XX_X
5._NA_45
GGAACTAGCGAACCGGACTTGGX_XX_XX_X
6._GC-01-111-6-08
GGAACTAGCGAACCGGACTTGGX_XX_XX_X
7._GC-01-111-6-08
GGAACTAGCGAACCGGACTTGGX_XX_XX_X
8._GC-01-111-6-08
GGAACTAGCGAACCGGACTTGGX_XX_XX_X
9._GC-01-111-6-08
GGAACTAGCGAACCGGACTTGGX_XX_XX_X
10._GC-01-111-6-08
GGAACTAGCGAACCGGACTTGGX_XX_XX_X
11._GC-01-111-6-08
GGAACTAGCGAACCGGACTTGGX_XX_XX_X
12._NA_45
GGAACTAGCGAACCGGACTTGGX_XX_XX_X
13._NA_45
GGAACTAGCGAA__GGACTTGGX_XX_XX_X
14._GC-01-111-6-08
GGAACTAGCGAA__GGACTTGGX_XX_XX_X
15._NA_45
GGAACTAGCGAACTGGACTTGGX_XX_XX_X
16._GC-01-111-6-08
GGAACTAGCGAACTGGACTTGGX_XX_XX_X
17._SPA_9_[COL]
GGAACTAACGACCTGGACTTGGX_XX_XX_X

Input profile: NA_45

 
Mars Center for Cocoa Science, Brazil
Location: 1608 10
 Dapeng Zhang, 2016

1._NA_45

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 3 > FP
 Dapeng Zhang, 2016

2._NA_45

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 11 > F
 Dapeng Zhang, 2016

3._NA_45

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 1 > FP
 Dapeng Zhang, 2016

4._NA_45

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 4
 Dapeng Zhang, 2016

5._NA_45

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

6._NA_45 GC-01-111-6-08

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

7._NA_45 GC-01-111-6-08

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

8._NA_45 GC-01-111-6-08

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

9._NA_45 GC-01-111-6-08

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

10._NA_45 GC-01-111-6-08

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

11._NA_45 GC-01-111-6-08

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP2
 Mars, 2018

12._NA_45

identical
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 673
 Dapeng Zhang, 2016

13._NA_45

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 14 > F
 Dapeng Zhang, 2016

14._NA_45 GC-01-111-6-08

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

15._NA_45

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 9
 Dapeng Zhang, 2016

16._NA_45 GC-01-111-6-08

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

17._SPA_9_[COL]

91 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 2 X1 Y17
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25