SNP Profiles matching NA 45

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 Key

 1234567891011121314
_Input profile
CCAACGTTTTCCCTTTCCCCAAGGCCAG
1._NA_45
CCAACGTTTT__CTTTCCCCAAGGCCAG
2._NA_45
CCAACGTTTT__CTTTCCCCAAGGCCAG
3._NA_45
CCAACGTTTT__CTTTCCCCAAGGCCAG
4._NA_45
CCAACGTTTT__CTTTCCCCAAGGCCAG
5._NA_45
CCAACGTTTT__CTTTCCCCAAGGCCAG
6._NA_45
CCAACGTTTT__CTTTCCCCAAGGCCAG
7._GC-01-111-6-08
CCAACGTTTT__CTTTCCCCAAGGCCAG
8._GC-01-111-6-08
CCAACGTTTT__CTTTCCCCAAGGCCAG
9._GC-01-111-6-08
CCAACGTTTT__CTTTCCCCAAGGCCAG
10._GC-01-111-6-08
CCAACGTTTT__CTTTCCCCAAGGCCAG
11._GC-01-111-6-08
CCAACGTTTT__CTTTCCCCAAGGCCAG
12._GC-01-111-6-08
CCAACGTTTT__CTTTCCCCAAGGCCAG
13._NA_45
CCAACGTTTT__CTTTCCCCAAGGCCAG
14._GC-01-111-6-08
CCAACGTTTT__CTTTCCCCAAGGCCAG
15._NA_45
CCAACGTTTT__CTTTCCCCAAGGCCAG
16._GC-01-111-6-08
CCAACGTTTT__CTTTCCCCAAGGCCAG
17._SPA_9_[COL]
CCAACGTTTTACTTGTCCCCAAGGCCAG
 1516171819202122232425262728
_Input profile
TTAAGGCTCCCGGGAACCAAGGGTTTCC
1._NA_45
TTAAGGCTCCCGGGAACCAAGGGTTTCC
2._NA_45
TTAAGGCTCCCGGGAACCAAGGGTTTCC
3._NA_45
TTAAGGCTCCCGGGAACCAAGGGTTTCC
4._NA_45
TTAAGGCTCCCGGGAACCAAGGGTTTCC
5._NA_45
TTAAGGCTCCCGGGAACCAAGGGTTTCC
6._NA_45
TTAAGGCTCCCGGGAACCAAGGGTTTCC
7._GC-01-111-6-08
TTAAGGCTCCCGGGAACCAAGGGTTTCC
8._GC-01-111-6-08
TTAAGGCTCCCGGGAACCAAGGGTTTCC
9._GC-01-111-6-08
TTAAGGCTCCCGGGAACCAAGGGTTTCC
10._GC-01-111-6-08
TTAAGGCTCCCGGGAACCAAGGGTTTCC
11._GC-01-111-6-08
TTAAGGCTCCCGGGAACCAAGGGTTTCC
12._GC-01-111-6-08
TTAAGGCTCCCGGGAACCAAGGGTTTCC
13._NA_45
TTAAGGCTCCCGGGAACCAAGGGTTTCC
14._GC-01-111-6-08
TTAAGGCTCCCGGGAACCAAGGGTTTCC
15._NA_45
TTAAGGCTCCCGGGAACCAAGGGTTTCC
16._GC-01-111-6-08
TTAAGGCTCCCGGGAACCAAGGGTTTCC
17._SPA_9_[COL]
TTAAGGCCCCCGGGAACCAAGGGGTTCC
 293031323334353637383940  
_Input profile
AAGGAACTAGCGAACCGGACTTGGX_XX_X
1._NA_45
AAGGAACTAGCGAACCGGACTTGGX_XX_X
2._NA_45
AAGGAACTAGCGAACCGGACTTGGX_XX_X
3._NA_45
AAGGAACTAGCGAACCGGACTTGGX_XX_X
4._NA_45
AAGGAACTAGCGAACCGGACTTGGX_XX_X
5._NA_45
AAGGAACTAGCGAACCGGACTTGGX_XX_X
6._NA_45
AAGGAACTAGCGAACCGGACTTGGX_XX_X
7._GC-01-111-6-08
AAGGAACTAGCGAACCGGACTTGGX_XX_X
8._GC-01-111-6-08
AAGGAACTAGCGAACCGGACTTGGX_XX_X
9._GC-01-111-6-08
AAGGAACTAGCGAACCGGACTTGGX_XX_X
10._GC-01-111-6-08
AAGGAACTAGCGAACCGGACTTGGX_XX_X
11._GC-01-111-6-08
AAGGAACTAGCGAACCGGACTTGGX_XX_X
12._GC-01-111-6-08
AAGGAACTAGCGAACCGGACTTGGX_XX_X
13._NA_45
AAGGAACTAGCGAA__GGACTTGGX_XX_X
14._GC-01-111-6-08
AAGGAACTAGCGAA__GGACTTGGX_XX_X
15._NA_45
AAGGAACTAGCGAACTGGACTTGGX_XX_X
16._GC-01-111-6-08
AAGGAACTAGCGAACTGGACTTGGX_XX_X
17._SPA_9_[COL]
AAGGAACTAACGACCTGGACTTGGX_XX_X

Input profile: NA_45

 
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 673
 Dapeng Zhang, 2016

1._NA_45

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 3 > FP
 Dapeng Zhang, 2016

2._NA_45

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 11 > F
 Dapeng Zhang, 2016

3._NA_45

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 1 > FP
 Dapeng Zhang, 2016

4._NA_45

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 10
 Dapeng Zhang, 2016

5._NA_45

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 4
 Dapeng Zhang, 2016

6._NA_45

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

7._NA_45 GC-01-111-6-08

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

8._NA_45 GC-01-111-6-08

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

9._NA_45 GC-01-111-6-08

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

10._NA_45 GC-01-111-6-08

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

11._NA_45 GC-01-111-6-08

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

12._NA_45 GC-01-111-6-08

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP2
 Mars, 2018

13._NA_45

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 14 > F
 Dapeng Zhang, 2016

14._NA_45 GC-01-111-6-08

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

15._NA_45

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 9
 Dapeng Zhang, 2016

16._NA_45 GC-01-111-6-08

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

17._SPA_9_[COL]

90 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 2 X1 Y17
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25