SNP Profiles matching NA 33

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 Key

 1234567891011121314
_Input profile
CCAGCCTTTTAATTCCCCAAAGCCAGCT
1._AMAZ_3_/2
CCAGCCTTTTAATTCCCCAAAGCCAGCT
2._AMAZ_3_/2
CCAGCCTTTTAATTCCCCAAAGCCAGCT
3._AMAZ_3_/2
CCAGCCTTTTAATTCCCCAAAGCCAGCT
4._GC-03-022-2-11
CCAGCCTTTTAATTCCCCAAAGCCAGCT
5._GC-03-022-2-11
CCAGCCTTTTAATTCCCCAAAGCCAGCT
6._GC-03-022-2-11
CCAGCCTTTTAATTCCCCAAAGCCAGCT
7._NA_33
CCAGCCTTTTAATTCCCCAAAGCCAGCT
8._NA_33
CCAGCCTTTTAATTCCCCAAAGCCAGCT
9._NA_33
CCAGCCTTTTAATTCCCCAAAGCCAGCT
10._NA_33
CCAGCCTTTTAATTCCCCAAAGCCAGCT
11._NA_33
CCAGCCTTTTAATTCCCCAAAGCCAGCT
12._NA_33
CCAGCCTTTTAATTCCCCAAAGCCAGCT
13._NA_33
CCAGCCTTTTAATTCCCCAAAGCCAGCT
14._NA_33
CCAGCCTTTTAATTCCCCAAAGCCAGCT
15._NA_33
CCAGCCTTTTAATTCCCCAAAGCCAGCT
16._NA_33
CCAGCCTTTTAATTCCCCAAAGCCAGCT
17._NA_33
CCAGCCTTTTAATTCCCCAAAGCCAGCT
18._GC-01-6-1-06
CCAGCCTTTTAATTCCCCAAAGCCAGCT
19._GC-01-6-1-06
CCAGCCTTTTAATTCCCCAAAGCCAGCT
20._GC-01-6-1-06
CCAGCCTTTTAATTCCCCAAAGCCAGCT
21._GC-01-6-1-06
CCAGCCTTTTAATTCCCCAAAGCCAGCT
22._GC-01-006-1-06
CCAGCCTTTTAATTCCCCAAAGCCAGCT
23._GC-01-006-1-06
CCAGCCTTTTAATTCCCCAAAGCCAGCT
24._GC-01-006-1-06
CCAGCCTTTTAATTCCCCAAAGCCAGCT
25._GC-01-006-1-06
CCAGCCTTTTAATTCCCCAAAGCCAGCT
26._GC-01-006-1-06
CCAGCCTTTTAATTCCCCAAAGCCAGCT
27._GC-01-006-1-06
CCAGCCTTTTAATTCCCCAAAGCCAGCT
28._GC-01-006-1-06
CCAGCCTTTTAATTCCCCAAAGCCAGCT
29._GC-01-006-1-06
CCAGCCTTTTAATTCCCCAAAGCCAGCT
30._AMAZ_3_/2
CCAGCCTTTTAATTCCCCAAAGCCAGCT
31._GC-03-022-2-11
CCAGCCTTTTAATTCCCCAAAGCCAGCT
32._NA_33
CCAGCCTTTTACTTCCCCAAAGCCAGCT
33._NA_33
CCAGCCTTTTACTTCCCCAAAGCCAGCT
 1516171819202122232425262728
_Input profile
AACGCCCTGGGGAACTACGGGGCTCCAG
1._AMAZ_3_/2
AACGCCCTGGGGAACTACGGGGCTCCAG
2._AMAZ_3_/2
AACGCCCTGGGGAACTACGGGGCTCCAG
3._AMAZ_3_/2
AACGCCCTGGGGAACTACGGGGCTCCAG
4._GC-03-022-2-11
AACGCCCTGGGGAACTACGGGGCTCCAG
5._GC-03-022-2-11
AACGCCCTGGGGAACTACGGGGCTCCAG
6._GC-03-022-2-11
AACGCCCTGGGGAACTACGGGGCTCCAG
7._NA_33
AACGCCCTGGGGAACTACGGGGCTCCAG
8._NA_33
AACGCCCTGGGGAACTACGGGGCTCCAG
9._NA_33
AACGCCCTGGGGAACTACGGGGCTCCAG
10._NA_33
AACGCCCTGGGGAACTACGGGGCTCCAG
11._NA_33
AACGCCCTGGGGAACTACGGGGCTCCAG
12._NA_33
AACGCCCTGGGGAACTACGGGGCTCCAG
13._NA_33
AACGCCCTGGGGAACTACGGGGCTCCAG
14._NA_33
AACGCCCTGGGGAACTACGGGGCTCCAG
15._NA_33
AACGCCCTGGGGAACTACGGGGCTCCAG
16._NA_33
AACGCCCTGGGGAACTACGGGGCTCCAG
17._NA_33
AACGCCCTGGGGAACTACGGGGCTCCAG
18._GC-01-6-1-06
AACGCCCTGGGGAACTACGGGGCTCCAG
19._GC-01-6-1-06
AACGCCCTGGGGAACTACGGGGCTCCAG
20._GC-01-6-1-06
AACGCCCTGGGGAACTACGGGGCTCCAG
21._GC-01-6-1-06
AACGCCCTGGGGAACTACGGGGCTCCAG
22._GC-01-006-1-06
AACGCCCTGGGGAACTACGGGGCTCCAG
23._GC-01-006-1-06
AACGCCCTGGGGAACTACGGGGCTCCAG
24._GC-01-006-1-06
AACGCCCTGGGGAACTACGGGGCTCCAG
25._GC-01-006-1-06
AACGCCCTGGGGAACTACGGGGCTCCAG
26._GC-01-006-1-06
AACGCCCTGGGGAACTACGGGGCTCCAG
27._GC-01-006-1-06
AACGCCCTGGGGAACTACGGGGCTCCAG
28._GC-01-006-1-06
AACGCCCTGGGGAACTACGGGGCTCCAG
29._GC-01-006-1-06
AACGCCCTGGGGAACTACGGGGCTCCAG
30._AMAZ_3_/2
AACGCCCTGGGG__CTACGGGGCTCCAG
31._GC-03-022-2-11
AACGCCCTGGGG__CTACGGGGCTCCAG
32._NA_33
AACGCCCTGGGGAGCTACGGGGCTCCAG
33._NA_33
AACGCCCTGGGGAGCTACGGGGCTCCAG
 2930313233343536373839   
_Input profile
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
1._AMAZ_3_/2
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
2._AMAZ_3_/2
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
3._AMAZ_3_/2
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
4._GC-03-022-2-11
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
5._GC-03-022-2-11
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
6._GC-03-022-2-11
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
7._NA_33
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
8._NA_33
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
9._NA_33
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
10._NA_33
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
11._NA_33
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
12._NA_33
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
13._NA_33
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
14._NA_33
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
15._NA_33
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
16._NA_33
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
17._NA_33
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
18._GC-01-6-1-06
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
19._GC-01-6-1-06
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
20._GC-01-6-1-06
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
21._GC-01-6-1-06
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
22._GC-01-006-1-06
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
23._GC-01-006-1-06
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
24._GC-01-006-1-06
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
25._GC-01-006-1-06
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
26._GC-01-006-1-06
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
27._GC-01-006-1-06
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
28._GC-01-006-1-06
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
29._GC-01-006-1-06
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
30._AMAZ_3_/2
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
31._GC-03-022-2-11
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
32._NA_33
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
33._NA_33
GGATCTGGCCACCTGGACTTGGX_XX_XX_X

Input profile: NA_33

 
Mars Center for Cocoa Science, Brazil
Location: 1104 9 > FP
 Dapeng Zhang, 2016

1._AMAZ_3_/2

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 10
 Dapeng Zhang, 2016

2._AMAZ_3_/2

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 3 > FP
 Dapeng Zhang, 2016

3._AMAZ_3_/2

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

4._AMAZ_3_/2 GC-03-022-2-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

5._AMAZ_3_/2 GC-03-022-2-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

6._AMAZ_3_/2 GC-03-022-2-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

7._NA_33

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 7 > FP
 Dapeng Zhang, 2016

8._NA_33

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 6 > FP
 Dapeng Zhang, 2016

9._NA_33

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 3 > FP
 Dapeng Zhang, 2016

10._NA_33

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 2 > FP
 Dapeng Zhang, 2016

11._NA_33

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 16 > F
 Dapeng Zhang, 2016

12._NA_33

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 15 > F
 Dapeng Zhang, 2016

13._NA_33

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 14 > F
 Dapeng Zhang, 2016

14._NA_33

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 12 > F
 Dapeng Zhang, 2016

15._NA_33

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 11 > F
 Dapeng Zhang, 2016

16._NA_33

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 10 > F
 Dapeng Zhang, 2016

17._NA_33

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 1 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

18._NA_33 GC-01-6-1-06

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 4, Tree: PL3
Notes: PL3 FP2
 Mars, 2018

19._NA_33 GC-01-6-1-06

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 4, Tree: PL9
Notes: PL9 FP1
 Mars, 2018

20._NA_33 GC-01-6-1-06

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 4, Tree: PL12
Notes: PL12 FP4
 Mars, 2018

21._NA_33 GC-01-6-1-06

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 4, Tree: PL14
Notes: PL14 FP3
 Mars, 2018

22._NA_33 GC-01-006-1-06

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP5
 Mars, 2018

23._NA_33 GC-01-006-1-06

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP6
 Mars, 2018

24._NA_33 GC-01-006-1-06

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP11
 Mars, 2018

25._NA_33 GC-01-006-1-06

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP12
 Mars, 2018

26._NA_33 GC-01-006-1-06

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP8
 Mars, 2018

27._NA_33 GC-01-006-1-06

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP9
 Mars, 2018

28._NA_33 GC-01-006-1-06

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP13
 Mars, 2018

29._NA_33 GC-01-006-1-06

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16 > FP14
 Mars, 2018

30._AMAZ_3_/2

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 4
 Dapeng Zhang, 2016

31._AMAZ_3_/2 GC-03-022-2-11

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

32._NA_33

97.4 %
39 shared markers

Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia
Location: KW 397 I-032
 Dapeng Zhang, 2016

33._NA_33

97.4 %
39 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Row 24 C0211 44
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25