SNP Profiles matching NA 33

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 Key

 1234567891011121314
_Input profile
CCAGCCTTTTAATTGTCCCCAAAGCCAG
1._AMAZ_3_/2
CCAGCCTTTTAATTGTCCCCAAAGCCAG
2._AMAZ_3_/2
CCAGCCTTTTAATTGTCCCCAAAGCCAG
3._AMAZ_3_/2
CCAGCCTTTTAATTGTCCCCAAAGCCAG
4._GC-03-022-2-11
CCAGCCTTTTAATTGTCCCCAAAGCCAG
5._GC-03-022-2-11
CCAGCCTTTTAATTGTCCCCAAAGCCAG
6._GC-03-022-2-11
CCAGCCTTTTAATTGTCCCCAAAGCCAG
7._NA_33
CCAGCCTTTTAATTGTCCCCAAAGCCAG
8._NA_33
CCAGCCTTTTAATTGTCCCCAAAGCCAG
9._NA_33
CCAGCCTTTTAATTGTCCCCAAAGCCAG
10._NA_33
CCAGCCTTTTAATTGTCCCCAAAGCCAG
11._NA_33
CCAGCCTTTTAATTGTCCCCAAAGCCAG
12._NA_33
CCAGCCTTTTAATTGTCCCCAAAGCCAG
13._NA_33
CCAGCCTTTTAATTGTCCCCAAAGCCAG
14._NA_33
CCAGCCTTTTAATTGTCCCCAAAGCCAG
15._NA_33
CCAGCCTTTTAATTGTCCCCAAAGCCAG
16._NA_33
CCAGCCTTTTAATTGTCCCCAAAGCCAG
17._GC-01-6-1-06
CCAGCCTTTTAATTGTCCCCAAAGCCAG
18._GC-01-6-1-06
CCAGCCTTTTAATTGTCCCCAAAGCCAG
19._GC-01-6-1-06
CCAGCCTTTTAATTGTCCCCAAAGCCAG
20._GC-01-006-1-06
CCAGCCTTTTAATTGTCCCCAAAGCCAG
21._GC-01-006-1-06
CCAGCCTTTTAATTGTCCCCAAAGCCAG
22._GC-01-006-1-06
CCAGCCTTTTAATTGTCCCCAAAGCCAG
23._GC-01-006-1-06
CCAGCCTTTTAATTGTCCCCAAAGCCAG
24._GC-01-006-1-06
CCAGCCTTTTAATTGTCCCCAAAGCCAG
25._GC-01-006-1-06
CCAGCCTTTTAATTGTCCCCAAAGCCAG
26._GC-01-006-1-06
CCAGCCTTTTAATTGTCCCCAAAGCCAG
27._GC-01-006-1-06
CCAGCCTTTTAATTGTCCCCAAAGCCAG
28._AMAZ_3_/2
CCAGCCTTTTAATTGTCCCCAAAGCCAG
29._GC-03-022-2-11
CCAGCCTTTTAATTGTCCCCAAAGCCAG
30._NA_33
CCAGCCTTTTAATT__CCCCAAAGCCAG
31._GC-01-6-1-06
CCAGCCTTTTAATT__CCCCAAAGCCAG
32._NA_33
CCAGCCTTTTACTTGTCCCCAAAGCCAG
33._NA_33
CCAGCCTTTTACTTGTCCCCAAAGCCAG
 1516171819202122232425262728
_Input profile
CTAACGCCCTGGGGAACTACGGGGCTCC
1._AMAZ_3_/2
CTAACGCCCTGGGGAACTACGGGGCTCC
2._AMAZ_3_/2
CTAACGCCCTGGGGAACTACGGGGCTCC
3._AMAZ_3_/2
CTAACGCCCTGGGGAACTACGGGGCTCC
4._GC-03-022-2-11
CTAACGCCCTGGGGAACTACGGGGCTCC
5._GC-03-022-2-11
CTAACGCCCTGGGGAACTACGGGGCTCC
6._GC-03-022-2-11
CTAACGCCCTGGGGAACTACGGGGCTCC
7._NA_33
CTAACGCCCTGGGGAACTACGGGGCTCC
8._NA_33
CTAACGCCCTGGGGAACTACGGGGCTCC
9._NA_33
CTAACGCCCTGGGGAACTACGGGGCTCC
10._NA_33
CTAACGCCCTGGGGAACTACGGGGCTCC
11._NA_33
CTAACGCCCTGGGGAACTACGGGGCTCC
12._NA_33
CTAACGCCCTGGGGAACTACGGGGCTCC
13._NA_33
CTAACGCCCTGGGGAACTACGGGGCTCC
14._NA_33
CTAACGCCCTGGGGAACTACGGGGCTCC
15._NA_33
CTAACGCCCTGGGGAACTACGGGGCTCC
16._NA_33
CTAACGCCCTGGGGAACTACGGGGCTCC
17._GC-01-6-1-06
CTAACGCCCTGGGGAACTACGGGGCTCC
18._GC-01-6-1-06
CTAACGCCCTGGGGAACTACGGGGCTCC
19._GC-01-6-1-06
CTAACGCCCTGGGGAACTACGGGGCTCC
20._GC-01-006-1-06
CTAACGCCCTGGGGAACTACGGGGCTCC
21._GC-01-006-1-06
CTAACGCCCTGGGGAACTACGGGGCTCC
22._GC-01-006-1-06
CTAACGCCCTGGGGAACTACGGGGCTCC
23._GC-01-006-1-06
CTAACGCCCTGGGGAACTACGGGGCTCC
24._GC-01-006-1-06
CTAACGCCCTGGGGAACTACGGGGCTCC
25._GC-01-006-1-06
CTAACGCCCTGGGGAACTACGGGGCTCC
26._GC-01-006-1-06
CTAACGCCCTGGGGAACTACGGGGCTCC
27._GC-01-006-1-06
CTAACGCCCTGGGGAACTACGGGGCTCC
28._AMAZ_3_/2
CTAACGCCCTGGGG__CTACGGGGCTCC
29._GC-03-022-2-11
CTAACGCCCTGGGG__CTACGGGGCTCC
30._NA_33
CTAACGCCCTGGGGAACTACGGGGCTCC
31._GC-01-6-1-06
CTAACGCCCTGGGGAACTACGGGGCTCC
32._NA_33
CTAACGCCCTGGGGAGCTACGGGGCTCC
33._NA_33
CTAACGCCCTGGGGAGCTACGGGGCTCC
 293031323334353637383940  
_Input profile
AGGGATCTGGCCACCTGGACTTGGX_XX_X
1._AMAZ_3_/2
AGGGATCTGGCCACCTGGACTTGGX_XX_X
2._AMAZ_3_/2
AGGGATCTGGCCACCTGGACTTGGX_XX_X
3._AMAZ_3_/2
AGGGATCTGGCCACCTGGACTTGGX_XX_X
4._GC-03-022-2-11
AGGGATCTGGCCACCTGGACTTGGX_XX_X
5._GC-03-022-2-11
AGGGATCTGGCCACCTGGACTTGGX_XX_X
6._GC-03-022-2-11
AGGGATCTGGCCACCTGGACTTGGX_XX_X
7._NA_33
AGGGATCTGGCCACCTGGACTTGGX_XX_X
8._NA_33
AGGGATCTGGCCACCTGGACTTGGX_XX_X
9._NA_33
AGGGATCTGGCCACCTGGACTTGGX_XX_X
10._NA_33
AGGGATCTGGCCACCTGGACTTGGX_XX_X
11._NA_33
AGGGATCTGGCCACCTGGACTTGGX_XX_X
12._NA_33
AGGGATCTGGCCACCTGGACTTGGX_XX_X
13._NA_33
AGGGATCTGGCCACCTGGACTTGGX_XX_X
14._NA_33
AGGGATCTGGCCACCTGGACTTGGX_XX_X
15._NA_33
AGGGATCTGGCCACCTGGACTTGGX_XX_X
16._NA_33
AGGGATCTGGCCACCTGGACTTGGX_XX_X
17._GC-01-6-1-06
AGGGATCTGGCCACCTGGACTTGGX_XX_X
18._GC-01-6-1-06
AGGGATCTGGCCACCTGGACTTGGX_XX_X
19._GC-01-6-1-06
AGGGATCTGGCCACCTGGACTTGGX_XX_X
20._GC-01-006-1-06
AGGGATCTGGCCACCTGGACTTGGX_XX_X
21._GC-01-006-1-06
AGGGATCTGGCCACCTGGACTTGGX_XX_X
22._GC-01-006-1-06
AGGGATCTGGCCACCTGGACTTGGX_XX_X
23._GC-01-006-1-06
AGGGATCTGGCCACCTGGACTTGGX_XX_X
24._GC-01-006-1-06
AGGGATCTGGCCACCTGGACTTGGX_XX_X
25._GC-01-006-1-06
AGGGATCTGGCCACCTGGACTTGGX_XX_X
26._GC-01-006-1-06
AGGGATCTGGCCACCTGGACTTGGX_XX_X
27._GC-01-006-1-06
AGGGATCTGGCCACCTGGACTTGGX_XX_X
28._AMAZ_3_/2
AGGGATCTGGCCACCTGGACTTGGX_XX_X
29._GC-03-022-2-11
AGGGATCTGGCCACCTGGACTTGGX_XX_X
30._NA_33
AGGGATCTGGCCACCTGGACTTGGX_XX_X
31._GC-01-6-1-06
AGGGATCTGGCCACCTGGACTTGGX_XX_X
32._NA_33
AGGGATCTGGCCACCTGGACTTGGX_XX_X
33._NA_33
AGGGATCTGGCCACCTGGACTTGGX_XX_X

Input profile: NA_33

 
Mars Center for Cocoa Science, Brazil
Location: 1104 3 > FP
 Dapeng Zhang, 2016

1._AMAZ_3_/2

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 10
 Dapeng Zhang, 2016

2._AMAZ_3_/2

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 3 > FP
 Dapeng Zhang, 2016

3._AMAZ_3_/2

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

4._AMAZ_3_/2 GC-03-022-2-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

5._AMAZ_3_/2 GC-03-022-2-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

6._AMAZ_3_/2 GC-03-022-2-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

7._NA_33

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 7 > FP
 Dapeng Zhang, 2016

8._NA_33

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 6 > FP
 Dapeng Zhang, 2016

9._NA_33

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 2 > FP
 Dapeng Zhang, 2016

10._NA_33

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 16 > F
 Dapeng Zhang, 2016

11._NA_33

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 15 > F
 Dapeng Zhang, 2016

12._NA_33

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 14 > F
 Dapeng Zhang, 2016

13._NA_33

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 12 > F
 Dapeng Zhang, 2016

14._NA_33

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 11 > F
 Dapeng Zhang, 2016

15._NA_33

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 10 > F
 Dapeng Zhang, 2016

16._NA_33

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 1 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

17._NA_33 GC-01-6-1-06

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 4, Tree: PL3
Notes: PL3 FP2
 Mars, 2018

18._NA_33 GC-01-6-1-06

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 4, Tree: PL12
Notes: PL12 FP4
 Mars, 2018

19._NA_33 GC-01-6-1-06

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 4, Tree: PL14
Notes: PL14 FP3
 Mars, 2018

20._NA_33 GC-01-006-1-06

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP5
 Mars, 2018

21._NA_33 GC-01-006-1-06

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP6
 Mars, 2018

22._NA_33 GC-01-006-1-06

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP11
 Mars, 2018

23._NA_33 GC-01-006-1-06

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP12
 Mars, 2018

24._NA_33 GC-01-006-1-06

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP8
 Mars, 2018

25._NA_33 GC-01-006-1-06

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP9
 Mars, 2018

26._NA_33 GC-01-006-1-06

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP13
 Mars, 2018

27._NA_33 GC-01-006-1-06

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16 > FP14
 Mars, 2018

28._AMAZ_3_/2

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 4
 Dapeng Zhang, 2016

29._AMAZ_3_/2 GC-03-022-2-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

30._NA_33

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 9 > FP
 Dapeng Zhang, 2016

31._NA_33 GC-01-6-1-06

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 4, Tree: PL9
Notes: PL9 FP1
 Mars, 2018

32._NA_33

97.5 %
40 shared markers

Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia
Location: KW 397 I-032
 Dapeng Zhang, 2016

33._NA_33

97.5 %
40 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Row 24 C0211 44
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25