SNP Profiles matching NA 33

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 Key

 1234567891011121314
_Input profile
CCAGCGTTTTCCTTTTCCCCAAAGCTAG
1._RUQ_1230
CCAGCGTTTTCCTTTTCCCCAAAGCTAG
2._NA_26
CCAACGTTTTCCTTTTCCCCAAAGCTAG
3._NA_26
CCAACGTTTTCCTTTTCCCCAAAGCTAG
4._NA_26
CCAACGTTTTCCTTTTCCCCAAAGCTAG
5._NA_26
CCAACGTTTTCCTTTTCCCCAAAGCTAG
6._NA_26
CCAACGTTTTCCTTTTCCCCAAAGCTAG
7._GC-04-021-2-03
CCAACGTTTTCCTTTTCCCCAAAGCTAG
8._GC-04-021-2-03
CCAACGTTTTCCTTTTCCCCAAAGCTAG
9._GC-04-021-2-03
CCAACGTTTTCCTTTTCCCCAAAGCTAG
10._GC-04-021-2-03
CCAACGTTTTCCTTTTCCCCAAAGCTAG
11._GC-04-021-2-03
CCAACGTTTTCCTTTTCCCCAAAGCTAG
12._RUQ_1230
__AACGTT______TT________CTAG
13._IMC_14
CCAGCGTTTT__TT__CCCCAAGGCTAA
14._GC-03-030-3-09
CCAGCGTTTT__TT__CCCCAAGGCTAA
15._IMC_14
CCAGCGTTTTCCTT__CCCCAAGGCTAA
16._IMC_14
CCAGCGTTTTCCTT__CCCCAAGGCTAA
17._GC-03-030-3-09
CCAGCGTTTTCCTT__CCCCAAGGCTAA
18._GC-03-030-3-09
CCAGCGTTTTCCTT__CCCCAAGGCTAA
19._IMC_14
CCAGCGTTTTCCTT__CCCCAAGGCTAA
20._GC-03-030-3-09
CCAGCGTTTTCCTT__CCCCAAGGCTAA
21._IMC_14
CCAGCGTTTT__TT__CCCCAAGGCTAA
22._IMC_14
CCAGCGTTTT__TT__CCCCAAGGCTAA
23._GC-03-030-3-09
CCAGCGTTTT__TT__CCCCAAGGCTAA
24._GC-03-030-3-09
CCAGCGTTTT__TT__CCCCAAGGCTAA
25._IMC_11
CCAGCGTTTTCCTTGTCCCCAAGGCTAA
26._IMC_11
CCAGCGTTTTCCTTGTCCCCAAGGCTAA
27._IMC_11
CCAGCGTTTTCCTTGTCCCCAAGGCTAA
28._IMC_11
CCAGCGTTTTCCTTGTCCCCAAGGCTAA
29._IMC_14
CCAGCGTTTTCCTTGTCCCCAAGGCTAA
30._IMC_14
CCAGCGTTTTCCTTGTCCCCAAGGCTAA
31._IMC_14
CCAGCGTTTTCCTTGTCCCCAAGGCTAA
32._IMC_14
CCAGCGTTTTCCTTGTCCCCAAGGCTAA
33._IMC_14
CCAGCGTTTTCCTTGTCCCCAAGGCTAA
34._GC-04-029-2-11
CCAGCGTTTTCCTTGTCCCCAAGGCTAA
35._GC-04-029-2-11
CCAGCGTTTTCCTTGTCCCCAAGGCTAA
36._GC-04-029-2-11
CCAGCGTTTTCCTTGTCCCCAAGGCTAA
37._GC-04-029-2-11
CCAGCGTTTTCCTTGTCCCCAAGGCTAA
38._GC-03-030-3-09
CCAGCGTTTTCCTTGTCCCCAAGGCTAA
39._GC-03-030-3-09
CCAGCGTTTTCCTTGTCCCCAAGGCTAA
40._GC-03-030-3-09
CCAGCGTTTTCCTTGTCCCCAAGGCTAA
41._GC-03-030-3-09
CCAGCGTTTTCCTTGTCCCCAAGGCTAA
42._GC-04-054-3-18
CCAGCGTTTTCCTTGTCCCCAAGGCTAA
 1516171819202122232425262728
_Input profile
CTAAGGCCCCCCGGAACTAAGGGGCTCC
1._RUQ_1230
CTAAGGCTCCCCGGAACCACGGGGCTCC
2._NA_26
CTAAGGCTCCCCGGAACCACGGGGCTCC
3._NA_26
CTAAGGCTCCCCGGAACCACGGGGCTCC
4._NA_26
CTAAGGCTCCCCGGAACCACGGGGCTCC
5._NA_26
CTAAGGCTCCCCGGAACCACGGGGCTCC
6._NA_26
CTAAGGCTCCCCGGAACCACGGGGCTCC
7._GC-04-021-2-03
CTAAGGCTCCCCGGAACCACGGGGCTCC
8._GC-04-021-2-03
CTAAGGCTCCCCGGAACCACGGGGCTCC
9._GC-04-021-2-03
CTAAGGCTCCCCGGAACCACGGGGCTCC
10._GC-04-021-2-03
CTAAGGCTCCCCGGAACCACGGGGCTCC
11._GC-04-021-2-03
CTAAGGCTCCCCGGAACCACGGGGCTCC
12._RUQ_1230
________CCCCGG__CCACGGGGCTCC
13._IMC_14
__AAGGCCCCCCGG__CCAAGGGGCTCC
14._GC-03-030-3-09
__AAGGCCCCCCGG__CCAAGGGGCTCC
15._IMC_14
TTAAGGCCCCCCGGAACCAAGGGGCTCC
16._IMC_14
TTAAGGCCCCCCGGAACCAAGGGGCTCC
17._GC-03-030-3-09
TTAAGGCCCCCCGGAACCAAGGGGCTCC
18._GC-03-030-3-09
TTAAGGCCCCCCGGAACCAAGGGGCTCC
19._IMC_14
TTAAGGCCCCCCGG__CCAAGGGGCTCC
20._GC-03-030-3-09
TTAAGGCCCCCCGG__CCAAGGGGCTCC
21._IMC_14
TTAAGGCCCCCCGG__CCAAGGGGCTCC
22._IMC_14
TTAAGGCCCCCCGG__CCAAGGGGCTCC
23._GC-03-030-3-09
TTAAGGCCCCCCGG__CCAAGGGGCTCC
24._GC-03-030-3-09
TTAAGGCCCCCCGG__CCAAGGGGCTCC
25._IMC_11
TTAAGGCCCCCCGGAACCAAGGGGCTCC
26._IMC_11
TTAAGGCCCCCCGGAACCAAGGGGCTCC
27._IMC_11
TTAAGGCCCCCCGGAACCAAGGGGCTCC
28._IMC_11
TTAAGGCCCCCCGGAACCAAGGGGCTCC
29._IMC_14
TTAAGGCCCCCCGGAACCAAGGGGCTCC
30._IMC_14
TTAAGGCCCCCCGGAACCAAGGGGCTCC
31._IMC_14
TTAAGGCCCCCCGGAACCAAGGGGCTCC
32._IMC_14
TTAAGGCCCCCCGGAACCAAGGGGCTCC
33._IMC_14
TTAAGGCCCCCCGGAACCAAGGGGCTCC
34._GC-04-029-2-11
TTAAGGCCCCCCGGAACCAAGGGGCTCC
35._GC-04-029-2-11
TTAAGGCCCCCCGGAACCAAGGGGCTCC
36._GC-04-029-2-11
TTAAGGCCCCCCGGAACCAAGGGGCTCC
37._GC-04-029-2-11
TTAAGGCCCCCCGGAACCAAGGGGCTCC
38._GC-03-030-3-09
TTAAGGCCCCCCGGAACCAAGGGGCTCC
39._GC-03-030-3-09
TTAAGGCCCCCCGGAACCAAGGGGCTCC
40._GC-03-030-3-09
TTAAGGCCCCCCGGAACCAAGGGGCTCC
41._GC-03-030-3-09
TTAAGGCCCCCCGGAACCAAGGGGCTCC
42._GC-04-054-3-18
TTAAGGCCCCCCGGAACCAAGGGGCTCC
 293031323334353637383940  
_Input profile
AAGGATTTAGCGAACTGGACATGGX_XX_X
1._RUQ_1230
AAGGATCTAGCGAACTGGACTTGGX_XX_X
2._NA_26
AAGGATCTAGCGAACTGGACTTGGX_XX_X
3._NA_26
AAGGATCTAGCGAACTGGACTTGGX_XX_X
4._NA_26
AAGGATCTAGCGAACTGGACTTGGX_XX_X
5._NA_26
AAGGATCTAGCGAACTGGACTTGGX_XX_X
6._NA_26
AAGGATCTAGCGAACTGGACTTGGX_XX_X
7._GC-04-021-2-03
AAGGATCTAGCGAACTGGACTTGGX_XX_X
8._GC-04-021-2-03
AAGGATCTAGCGAACTGGACTTGGX_XX_X
9._GC-04-021-2-03
AAGGATCTAGCGAACTGGACTTGGX_XX_X
10._GC-04-021-2-03
AAGGATCTAGCGAACTGGACTTGGX_XX_X
11._GC-04-021-2-03
AAGGATCTAGCGAACTGGACTTGGX_XX_X
12._RUQ_1230
AA__ATCTAGCGAACTGGAC____X_XX_X
13._IMC_14
AAGGAATTAGCGAACTGTACTTGGX_XX_X
14._GC-03-030-3-09
AAGGAATTAGCGAACTGTACTTGGX_XX_X
15._IMC_14
AAGGAATTAGCGAACTGTACTTGGX_XX_X
16._IMC_14
AAGGAATTAGCGAACTGTACTTGGX_XX_X
17._GC-03-030-3-09
AAGGAATTAGCGAACTGTACTTGGX_XX_X
18._GC-03-030-3-09
AAGGAATTAGCGAACTGTACTTGGX_XX_X
19._IMC_14
AAGGAATTAGCGAACTGTACTTGGX_XX_X
20._GC-03-030-3-09
AAGGAATTAGCGAACTGTACTTGGX_XX_X
21._IMC_14
AAGGAATTAGCGAACTGTACTTGGX_XX_X
22._IMC_14
AAGGAATTAGCGAACTGTACTTGGX_XX_X
23._GC-03-030-3-09
AAGGAATTAGCGAACTGTACTTGGX_XX_X
24._GC-03-030-3-09
AAGGAATTAGCGAACTGTACTTGGX_XX_X
25._IMC_11
AAGGAATTAGCGAACTGTACTTGGX_XX_X
26._IMC_11
AAGGAATTAGCGAACTGTACTTGGX_XX_X
27._IMC_11
AAGGAATTAGCGAACTGTACTTGGX_XX_X
28._IMC_11
AAGGAATTAGCGAACTGTACTTGGX_XX_X
29._IMC_14
AAGGAATTAGCGAACTGTACTTGGX_XX_X
30._IMC_14
AAGGAATTAGCGAACTGTACTTGGX_XX_X
31._IMC_14
AAGGAATTAGCGAACTGTACTTGGX_XX_X
32._IMC_14
AAGGAATTAGCGAACTGTACTTGGX_XX_X
33._IMC_14
AAGGAATTAGCGAACTGTACTTGGX_XX_X
34._GC-04-029-2-11
AAGGAATTAGCGAACTGTACTTGGX_XX_X
35._GC-04-029-2-11
AAGGAATTAGCGAACTGTACTTGGX_XX_X
36._GC-04-029-2-11
AAGGAATTAGCGAACTGTACTTGGX_XX_X
37._GC-04-029-2-11
AAGGAATTAGCGAACTGTACTTGGX_XX_X
38._GC-03-030-3-09
AAGGAATTAGCGAACTGTACTTGGX_XX_X
39._GC-03-030-3-09
AAGGAATTAGCGAACTGTACTTGGX_XX_X
40._GC-03-030-3-09
AAGGAATTAGCGAACTGTACTTGGX_XX_X
41._GC-03-030-3-09
AAGGAATTAGCGAACTGTACTTGGX_XX_X
42._GC-04-054-3-18
AAGGAATTAGCGAACTGTACTTGGX_XX_X

Input profile: NA_33

 
Cocoa Research Institute of Ghana (CRIG), Ghana
Location: M6 18, 19
 Dapeng Zhang, 2016

1._NA_26 RUQ_1230

93.8 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

2._NA_26

92.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4203 8 > FP
 Dapeng Zhang, 2016

3._NA_26

92.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4203 7 > FP
 Dapeng Zhang, 2016

4._NA_26

92.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4203 6 > FP
 Dapeng Zhang, 2016

5._NA_26

92.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4203 4 > FP
 Dapeng Zhang, 2016

6._NA_26

92.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4203 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

7._NA_26 GC-04-021-2-03

92.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

8._NA_26 GC-04-021-2-03

92.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

9._NA_26 GC-04-021-2-03

92.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP1
 Mars, 2018

10._NA_26 GC-04-021-2-03

92.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP2
 Mars, 2018

11._NA_26 GC-04-021-2-03

92.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

12._NA_26 RUQ_1230

91.7 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

13._IMC_14

91.7 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 10
 Dapeng Zhang, 2016

14._IMC_14 GC-03-030-3-09

91.7 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

15._IMC_14

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 16
 Dapeng Zhang, 2016

16._IMC_14

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 13
 Dapeng Zhang, 2016

17._IMC_14 GC-03-030-3-09

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

18._IMC_14 GC-03-030-3-09

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

19._IMC_14

90.8 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 12
 Dapeng Zhang, 2016

20._IMC_14 GC-03-030-3-09

90.8 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

21._IMC_14

90.5 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 6
 Dapeng Zhang, 2016

22._IMC_14

90.5 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 4
 Dapeng Zhang, 2016

23._IMC_14 GC-03-030-3-09

90.5 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

24._IMC_14 GC-03-030-3-09

90.5 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

25._IMC_11

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4211 6 > FP
 Dapeng Zhang, 2016

26._IMC_11

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4211 1 > FP
 Dapeng Zhang, 2016

27._IMC_11

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4211 8
 Dapeng Zhang, 2016

28._IMC_11

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4211 5
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

29._IMC_14

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4318 4 > FP
 Dapeng Zhang, 2016

30._IMC_14

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 11
 Dapeng Zhang, 2016

31._IMC_14

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 9
 Dapeng Zhang, 2016

32._IMC_14

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 5
 Dapeng Zhang, 2016

33._IMC_14

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

34._IMC_11 GC-04-029-2-11

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

35._IMC_11 GC-04-029-2-11

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

36._IMC_11 GC-04-029-2-11

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP3
 Mars, 2018

37._IMC_11 GC-04-029-2-11

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

38._IMC_14 GC-03-030-3-09

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

39._IMC_14 GC-03-030-3-09

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

40._IMC_14 GC-03-030-3-09

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

41._IMC_14 GC-03-030-3-09

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

42._IMC_14 GC-04-054-3-18

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25