SNP Profiles matching NA 26

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 Key

 1234567891011121314
_Input profile
CCAACGTTTTCCTTTTCCCCAAAGCTAG
1._NA_26
CCAACGTTTTCCTTTTCCCCAAAGCTAG
2._NA_26
CCAACGTTTTCCTTTTCCCCAAAGCTAG
3._NA_26
CCAACGTTTTCCTTTTCCCCAAAGCTAG
4._NA_26
CCAACGTTTTCCTTTTCCCCAAAGCTAG
5._GC-04-021-2-03
CCAACGTTTTCCTTTTCCCCAAAGCTAG
6._GC-04-021-2-03
CCAACGTTTTCCTTTTCCCCAAAGCTAG
7._GC-04-021-2-03
CCAACGTTTTCCTTTTCCCCAAAGCTAG
8._GC-04-021-2-03
CCAACGTTTTCCTTTTCCCCAAAGCTAG
9._GC-04-021-2-03
CCAACGTTTTCCTTTTCCCCAAAGCTAG
10._RUQ_1230
__AACGTT______TT________CTAG
11._RUQ_1230
CCAGCGTTTTCCTTTTCCCCAAAGCTAG
12._NA_33
CCAGCGTTTTCCTTTTCCCCAAAGCTAG
 1516171819202122232425262728
_Input profile
CTAAGGCTCCCCGGAACCACGGGGCTCC
1._NA_26
CTAAGGCTCCCCGGAACCACGGGGCTCC
2._NA_26
CTAAGGCTCCCCGGAACCACGGGGCTCC
3._NA_26
CTAAGGCTCCCCGGAACCACGGGGCTCC
4._NA_26
CTAAGGCTCCCCGGAACCACGGGGCTCC
5._GC-04-021-2-03
CTAAGGCTCCCCGGAACCACGGGGCTCC
6._GC-04-021-2-03
CTAAGGCTCCCCGGAACCACGGGGCTCC
7._GC-04-021-2-03
CTAAGGCTCCCCGGAACCACGGGGCTCC
8._GC-04-021-2-03
CTAAGGCTCCCCGGAACCACGGGGCTCC
9._GC-04-021-2-03
CTAAGGCTCCCCGGAACCACGGGGCTCC
10._RUQ_1230
________CCCCGG__CCACGGGGCTCC
11._RUQ_1230
CTAAGGCTCCCCGGAACCACGGGGCTCC
12._NA_33
CTAAGGCCCCCCGGAACTAAGGGGCTCC
 293031323334353637383940  
_Input profile
AAGGATCTAGCGAACTGGACTTGGX_XX_X
1._NA_26
AAGGATCTAGCGAACTGGACTTGGX_XX_X
2._NA_26
AAGGATCTAGCGAACTGGACTTGGX_XX_X
3._NA_26
AAGGATCTAGCGAACTGGACTTGGX_XX_X
4._NA_26
AAGGATCTAGCGAACTGGACTTGGX_XX_X
5._GC-04-021-2-03
AAGGATCTAGCGAACTGGACTTGGX_XX_X
6._GC-04-021-2-03
AAGGATCTAGCGAACTGGACTTGGX_XX_X
7._GC-04-021-2-03
AAGGATCTAGCGAACTGGACTTGGX_XX_X
8._GC-04-021-2-03
AAGGATCTAGCGAACTGGACTTGGX_XX_X
9._GC-04-021-2-03
AAGGATCTAGCGAACTGGACTTGGX_XX_X
10._RUQ_1230
AA__ATCTAGCGAACTGGAC____X_XX_X
11._RUQ_1230
AAGGATCTAGCGAACTGGACTTGGX_XX_X
12._NA_33
AAGGATTTAGCGAACTGGACATGGX_XX_X

Input profile: NA_26

 
Mars Center for Cocoa Science, Brazil
Location: 4203 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

1._NA_26

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4203 8 > FP
 Dapeng Zhang, 2016

2._NA_26

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4203 7 > FP
 Dapeng Zhang, 2016

3._NA_26

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4203 6 > FP
 Dapeng Zhang, 2016

4._NA_26

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4203 4 > FP
 Dapeng Zhang, 2016

5._NA_26 GC-04-021-2-03

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

6._NA_26 GC-04-021-2-03

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

7._NA_26 GC-04-021-2-03

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP1
 Mars, 2018

8._NA_26 GC-04-021-2-03

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP2
 Mars, 2018

9._NA_26 GC-04-021-2-03

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

10._NA_26 RUQ_1230

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

11._NA_26 RUQ_1230

98.8 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

12._NA_33

92.5 %
40 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: M6 18, 19
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25