SNP Profiles matching NA 26

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 Key

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_Input profile
CCAGCGTTCTCCTTGTCTCCATGGCCAA
1._IMC_47
CCAGCGTTCTCCTTGTCTCCATGGCCAA
2._RUQ_849
__AGCGTT______GT________CCAA
3._RUQ_1055
__AGCGTT______GT________CCAA
4._RUQ_849
CCAGCGTTCTCCTTGTCTCCATGGCCAG
5._RUQ_1590
__AGGGTT______GT________CCAA
 1516171819202122232425262728
_Input profile
TTAAGGCCTTCCGGAACCACGGGGCCAC
1._IMC_47
TTAAGGCCTTCCGGAACCACGGGGCCAC
2._RUQ_849
________TTCCGG__CCACCGGGCCAC
3._RUQ_1055
________TTCCGG__CCACCGGGCCAC
4._RUQ_849
TTAAGGCCCTCCGGAACCACGGGGCCAC
5._RUQ_1590
________TTCCGG__CCACCGGTCCAC
 293031323334353637383940  
_Input profile
AAAGATCTAGGGACCTTTCCATCGX_XX_X
1._IMC_47
AAAGATCTAGCCACCTTTCCATCGX_XX_X
2._RUQ_849
AA__ATCTAGCGACCTTTCC____X_XX_X
3._RUQ_1055
AA__ATCTAGCGACCTTTCC____X_XX_X
4._RUQ_849
AAAGATCTAGCGACCTGTCCATCGX_XX_X
5._RUQ_1590
AA__AACTAGGGACCTTTCC____X_XX_X

Input profile: NA_26

 
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B E352 T5
 Dapeng Zhang, 2016

1._IMC_47

97.5 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F401 T6
 Dapeng Zhang, 2016

2._IMC_47 RUQ_849

95.8 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._IMC_57 RUQ_1055

95.8 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

4._IMC_47 RUQ_849

95 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

5._IMC_50 RUQ_1590

91.7 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25