SNP Profiles matching NA 168

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAACGTTTTAATTTTCCCCAAGGCCAG
1._GU_255_/P
CCAACGTTTTAATTTTCCCCAAGGCCAG
2._GU_255_/P
CCAACGTTTTAATTTTCCCCAAGGCCAG
3._GU_255_/P
CCAACGTTTTAATTTTCCCCAAGGCCAG
4._GU_255_/P
CCAACGTTTTAATTTTCCCCAAGGCCAG
5._GC-08-282-8-54
CCAACGTTTTAATTTTCCCCAAGGCCAG
6._GC-08-282-8-54
CCAACGTTTTAATTTTCCCCAAGGCCAG
7._GC-08-282-8-54
CCAACGTTTTAATTTTCCCCAAGGCCAG
8._GC-08-282-8-54
CCAACGTTTTAATTTTCCCCAAGGCCAG
9._NA_168
CCAACGTTTTAATTTTCCCCAAGGCCAG
10._NA_168
CCAACGTTTTAATTTTCCCCAAGGCCAG
11._NA_168
CCAACGTTTTAATTTTCCCCAAGGCCAG
12._NA_168
CCAACGTTTTAATTTTCCCCAAGGCCAG
13._NA_168
CCAACGTTTTAATTTTCCCCAAGGCCAG
14._GC-01-112-6-09
CCAACGTTTTAATTTTCCCCAAGGCCAG
15._GC-01-112-6-09
CCAACGTTTTAATTTTCCCCAAGGCCAG
16._GC-01-112-6-09
CCAACGTTTTAATTTTCCCCAAGGCCAG
17._GC-01-112-6-09
CCAACGTTTTAATTTTCCCCAAGGCCAG
18._GC-01-112-6-09
CCAACGTTTTAATTTTCCCCAAGGCCAG
19._GC-01-112-6-09
CCAACGTTTTAATTTTCCCCAAGGCCAG
20._GU_255_/P
CCAACGTTTTAATTTTCCCCAAGG__AG
21._GC-08-282-8-54
CCAACGTTTTAATTTTCCCCAAGG__AG
22._MARPER_37
CCAACCTT__AATT__CC__AAAG__AG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
TTATGGCTCTCCGGAACCAAGGGTCCCC
1._GU_255_/P
TTATGGCTCTCCGGAACCAAGGGTCCCC
2._GU_255_/P
TTATGGCTCTCCGGAACCAAGGGTCCCC
3._GU_255_/P
TTATGGCTCTCCGGAACCAAGGGTCCCC
4._GU_255_/P
TTATGGCTCTCCGGAACCAAGGGTCCCC
5._GC-08-282-8-54
TTATGGCTCTCCGGAACCAAGGGTCCCC
6._GC-08-282-8-54
TTATGGCTCTCCGGAACCAAGGGTCCCC
7._GC-08-282-8-54
TTATGGCTCTCCGGAACCAAGGGTCCCC
8._GC-08-282-8-54
TTATGGCTCTCCGGAACCAAGGGTCCCC
9._NA_168
TTATGGCTCTCCGGAACCAAGGGTCCCC
10._NA_168
TTATGGCTCTCCGGAACCAAGGGTCCCC
11._NA_168
TTATGGCTCTCCGGAACCAAGGGTCCCC
12._NA_168
TTATGGCTCTCCGGAACCAAGGGTCCCC
13._NA_168
TTATGGCTCTCCGGAACCAAGGGTCCCC
14._GC-01-112-6-09
TTATGGCTCTCCGGAACCAAGGGTCCCC
15._GC-01-112-6-09
TTATGGCTCTCCGGAACCAAGGGTCCCC
16._GC-01-112-6-09
TTATGGCTCTCCGGAACCAAGGGTCCCC
17._GC-01-112-6-09
TTATGGCTCTCCGGAACCAAGGGTCCCC
18._GC-01-112-6-09
TTATGGCTCTCCGGAACCAAGGGTCCCC
19._GC-01-112-6-09
TTATGGCTCTCCGGAACCAAGGGTCCCC
20._GU_255_/P
TTATGGCTCTCCGGAACCAAGGGTCCCC
21._GC-08-282-8-54
TTATGGCTCTCCGGAACCAAGGGTCCCC
22._MARPER_37
TTATGG__CC__GGAACC__GG__CCCC
 29 30 31 32 33 34 35 36 37 38 39    
_Input profile
AGGGATCTAGCCAAGGACTTGGX_XX_XX_X
1._GU_255_/P
AGGGATCTAGCCAAGGACTTGGX_XX_XX_X
2._GU_255_/P
AGGGATCTAGCCAAGGACTTGGX_XX_XX_X
3._GU_255_/P
AGGGATCTAGCCAAGGACTTGGX_XX_XX_X
4._GU_255_/P
AGGGATCTAGCCAAGGACTTGGX_XX_XX_X
5._GC-08-282-8-54
AGGGATCTAGCCAAGGACTTGGX_XX_XX_X
6._GC-08-282-8-54
AGGGATCTAGCCAAGGACTTGGX_XX_XX_X
7._GC-08-282-8-54
AGGGATCTAGCCAAGGACTTGGX_XX_XX_X
8._GC-08-282-8-54
AGGGATCTAGCCAAGGACTTGGX_XX_XX_X
9._NA_168
AGGGATCTAGCCAAGGACTTGGX_XX_XX_X
10._NA_168
AGGGATCTAGCCAAGGACTTGGX_XX_XX_X
11._NA_168
AGGGATCTAGCCAAGGACTTGGX_XX_XX_X
12._NA_168
AGGGATCTAGCCAAGGACTTGGX_XX_XX_X
13._NA_168
AGGGATCTAGCCAAGGACTTGGX_XX_XX_X
14._GC-01-112-6-09
AGGGATCTAGCCAAGGACTTGGX_XX_XX_X
15._GC-01-112-6-09
AGGGATCTAGCCAAGGACTTGGX_XX_XX_X
16._GC-01-112-6-09
AGGGATCTAGCCAAGGACTTGGX_XX_XX_X
17._GC-01-112-6-09
AGGGATCTAGCCAAGGACTTGGX_XX_XX_X
18._GC-01-112-6-09
AGGGATCTAGCCAAGGACTTGGX_XX_XX_X
19._GC-01-112-6-09
AGGGATCTAGCCAAGGACTTGGX_XX_XX_X
20._GU_255_/P
AGGGATCTAGCCAAGGACTTGGX_XX_XX_X
21._GC-08-282-8-54
AGGGATCTAGCCAAGGACTTGGX_XX_XX_X
22._MARPER_37
AAGG__CTAG____GG__TT__X_XX_XX_X

Input profile: NA_168

 
Mars Center for Cocoa Science, Brazil
Location: 1609 3 > FP
 Dapeng Zhang, 2016

1._GU_255_/P

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8854 9
 Dapeng Zhang, 2016

2._GU_255_/P

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8854 6
 Dapeng Zhang, 2016

3._GU_255_/P

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8854 4
 Dapeng Zhang, 2016

4._GU_255_/P

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8854 3
 Dapeng Zhang, 2016

5._GU_255 GC-08-282-8-54

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

6._GU_255 GC-08-282-8-54

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

7._GU_255 GC-08-282-8-54

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

8._GU_255 GC-08-282-8-54

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

9._NA_168

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1609 6 > FP
 Dapeng Zhang, 2016

10._NA_168

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1609 4 > FP
 Dapeng Zhang, 2016

11._NA_168

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1609 1 > FP
 Dapeng Zhang, 2016

12._NA_168

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1609 12
 Dapeng Zhang, 2016

13._NA_168

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1609 10
 Dapeng Zhang, 2016

14._NA_168 GC-01-112-6-09

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

15._NA_168 GC-01-112-6-09

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

16._NA_168 GC-01-112-6-09

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

17._NA_168 GC-01-112-6-09

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP4
 Mars, 2018

18._NA_168 GC-01-112-6-09

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

19._NA_168 GC-01-112-6-09

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

20._GU_255_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8854 1
 Dapeng Zhang, 2016

21._GU_255 GC-08-282-8-54

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

22._MARPER_37

92.3 %
26 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 661
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25