SNP Profiles matching GU 255 /P

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAACGTTTTAATTTTCCCCAAGGCCAG
1._GU_255_/P___
CCAACGTTTTAATTTTCCCCAAGGCCAG
2._GU_255_/P___
CCAACGTTTTAATTTTCCCCAAGGCCAG
3._GU_255_/P___
CCAACGTTTTAATTTTCCCCAAGGCCAG
4._GU_255_/P___
CCAACGTTTTAATTTTCCCCAAGGCCAG
5._GU_255___
CCAACGTTTTAATTTTCCCCAAGGCCAG
6._GU_255___
CCAACGTTTTAATTTTCCCCAAGGCCAG
7._GU_255___
CCAACGTTTTAATTTTCCCCAAGGCCAG
8._GU_255___
CCAACGTTTTAATTTTCCCCAAGGCCAG
9._NA_168___
CCAACGTTTTAATTTTCCCCAAGGCCAG
10._NA_168___
CCAACGTTTTAATTTTCCCCAAGGCCAG
11._NA_168___
CCAACGTTTTAATTTTCCCCAAGGCCAG
12._NA_168___
CCAACGTTTTAATTTTCCCCAAGGCCAG
13._NA_168___
CCAACGTTTTAATTTTCCCCAAGGCCAG
14._NA_168___
CCAACGTTTTAATTTTCCCCAAGGCCAG
15._NA_168___
CCAACGTTTTAATTTTCCCCAAGGCCAG
16._NA_168___
CCAACGTTTTAATTTTCCCCAAGGCCAG
17._NA_168___
CCAACGTTTTAATTTTCCCCAAGGCCAG
18._GU_255_/P___
CCAACGTTTTAATTTTCCCCAAGG__AG
19._GU_255___
CCAACGTTTTAATTTTCCCCAAGG__AG
20._NA_168___
CCAACGTTTTAATTTTCCCCAAGGCCAG
21._NA_168___
CCAACGTTTTAATTTTCCCCAAGGCCAG
22._MARPER_37___
CCAACCTT__AATT__CC__AAAG__AG
23._ICS_39___
CCAGCCTTTTACTTTTCCCCAAAGCTAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
TTATGGCTCTCCGGAACCAAGGGTCCCC
1._GU_255_/P___
TTATGGCTCTCCGGAACCAAGGGTCCCC
2._GU_255_/P___
TTATGGCTCTCCGGAACCAAGGGTCCCC
3._GU_255_/P___
TTATGGCTCTCCGGAACCAAGGGTCCCC
4._GU_255_/P___
TTATGGCTCTCCGGAACCAAGGGTCCCC
5._GU_255___
TTATGGCTCTCCGGAACCAAGGGTCCCC
6._GU_255___
TTATGGCTCTCCGGAACCAAGGGTCCCC
7._GU_255___
TTATGGCTCTCCGGAACCAAGGGTCCCC
8._GU_255___
TTATGGCTCTCCGGAACCAAGGGTCCCC
9._NA_168___
TTATGGCTCTCCGGAACCAAGGGTCCCC
10._NA_168___
TTATGGCTCTCCGGAACCAAGGGTCCCC
11._NA_168___
TTATGGCTCTCCGGAACCAAGGGTCCCC
12._NA_168___
TTATGGCTCTCCGGAACCAAGGGTCCCC
13._NA_168___
TTATGGCTCTCCGGAACCAAGGGTCCCC
14._NA_168___
TTATGGCTCTCCGGAACCAAGGGTCCCC
15._NA_168___
TTATGGCTCTCCGGAACCAAGGGTCCCC
16._NA_168___
TTATGGCTCTCCGGAACCAAGGGTCCCC
17._NA_168___
TTATGGCTCTCCGGAACCAAGGGTCCCC
18._GU_255_/P___
TTATGGCTCTCCGGAACCAAGGGTCCCC
19._GU_255___
TTATGGCTCTCCGGAACCAAGGGTCCCC
20._NA_168___
TTATGGCTCTCCGGAACCAAGGGTCCCC
21._NA_168___
TTATGGCTCTCCGGAACCAAGGGTCCCC
22._MARPER_37___
TTATGG__CC__GGAACC__GG__CCCC
23._ICS_39___
TTATGGCTCCCCGGAACCAAGGGTCCCC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AGGGATCTAGCCAACTGGACTTGGX_XX_X
1._GU_255_/P___
AGGGATCTAGCCAACTGGACTTGGX_XX_X
2._GU_255_/P___
AGGGATCTAGCCAACTGGACTTGGX_XX_X
3._GU_255_/P___
AGGGATCTAGCCAACTGGACTTGGX_XX_X
4._GU_255_/P___
AGGGATCTAGCCAACTGGACTTGGX_XX_X
5._GU_255___
AGGGATCTAGCCAACTGGACTTGGX_XX_X
6._GU_255___
AGGGATCTAGCCAACTGGACTTGGX_XX_X
7._GU_255___
AGGGATCTAGCCAACTGGACTTGGX_XX_X
8._GU_255___
AGGGATCTAGCCAACTGGACTTGGX_XX_X
9._NA_168___
AGGGATCTAGCCAACTGGACTTGGX_XX_X
10._NA_168___
AGGGATCTAGCCAACTGGACTTGGX_XX_X
11._NA_168___
AGGGATCTAGCCAACTGGACTTGGX_XX_X
12._NA_168___
AGGGATCTAGCCAACTGGACTTGGX_XX_X
13._NA_168___
AGGGATCTAGCCAACTGGACTTGGX_XX_X
14._NA_168___
AGGGATCTAGCCAACTGGACTTGGX_XX_X
15._NA_168___
AGGGATCTAGCCAACTGGACTTGGX_XX_X
16._NA_168___
AGGGATCTAGCCAACTGGACTTGGX_XX_X
17._NA_168___
AGGGATCTAGCCAACTGGACTTGGX_XX_X
18._GU_255_/P___
AGGGATCTAGCCAACTGGACTTGGX_XX_X
19._GU_255___
AGGGATCTAGCCAACTGGACTTGGX_XX_X
20._NA_168___
AGGGATCTAGCCAA__GGACTTGGX_XX_X
21._NA_168___
AGGGATCTAGCCAA__GGACTTGGX_XX_X
22._MARPER_37___
AAGG__CTAG______GG__TT__X_XX_X
23._ICS_39___
AAGGATCTAGCCACCTGGACTTGGX_XX_X

Input profile: NA_168

 
Mars Center for Cocoa Science, Brazil
Location: 1609 10
 Dapeng Zhang, 2016

1._GU_255_/P

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8854 9
 Dapeng Zhang, 2016

2._GU_255_/P

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8854 6
 Dapeng Zhang, 2016

3._GU_255_/P

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8854 4
 Dapeng Zhang, 2016

4._GU_255_/P

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8854 3
 Dapeng Zhang, 2016

5._GU_255 GC-08-282-8-54

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

6._GU_255 GC-08-282-8-54

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

7._GU_255 GC-08-282-8-54

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

8._GU_255 GC-08-282-8-54

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

9._NA_168

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1609 6 > FP
 Dapeng Zhang, 2016

10._NA_168

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1609 4 > FP
 Dapeng Zhang, 2016

11._NA_168

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1609 1 > FP
 Dapeng Zhang, 2016

12._NA_168

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1609 12
 Dapeng Zhang, 2016

13._NA_168 GC-01-112-6-09

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

14._NA_168 GC-01-112-6-09

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

15._NA_168 GC-01-112-6-09

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP4
 Mars, 2018

16._NA_168 GC-01-112-6-09

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

17._NA_168 GC-01-112-6-09

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

18._GU_255_/P

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8854 1
 Dapeng Zhang, 2016

19._GU_255 GC-08-282-8-54

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

20._NA_168

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1609 3 > FP
 Dapeng Zhang, 2016

21._NA_168 GC-01-112-6-09

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

22._MARPER_37

92.3 %
26 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 661
 Dapeng Zhang, 2014

23._ICS_39 RUQ_1089

90 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25