SNP Profiles matching MO 9

 Show/Hide Profiles

 Key

 1234567891011121314
_Input profile
CCGGCGCTTTACCCTTCCCCAAGGCCAG
1._MO_9
CCGGCGCTTTACCCTTCCCCAAGGCCAG
2._MO_9
CCGGCGCTTTACCCTTCCCCAAGGCCAG
3._MO_9
CCGGCGCTTTACCCTTCCCCAAGGCCAG
4._MO_9
CCGGCGCTTTACCCTTCCCCAAGGCCAG
5._GC-05-071-2-22
CCGGCGCTTTACCCTTCCCCAAGGCCAG
6._GC-05-071-2-22
CCGGCGCTTTACCCTTCCCCAAGGCCAG
7._GC-05-119-3-21
CCGGCGCTTTACCCTTCCCCAAGGCCAG
8._GC-05-119-3-21
CCGGCGCTTTACCCTTCCCCAAGGCCAG
9._GC-05-119-3-21
CCGGCGCTTTACCCTTCCCCAAGGCCAG
10._MO_9
CCGGCGCTTTACCCTTCCCCAAGGCCAG
11._IMC_41
CCGGCGCCTT_CCTTCCCCAAGGCCAG
12._IMC_41
CCGGCGCCTTACCCTTCCCCAAGGCCAG
13._IMC_41
CCGGCGCCTTACCCTTCCCCAAGGCCAG
14._IMC_41
CCGGCGCCTTACCCTTCCCCAAGGCCAG
15._IMC_41
CCGGCGCCTTACCCTTCCCCAAGGCCAG
16._IMC_41
CCGGCGCCTTACCCTTCCCCAAGGCCAG
17._GC-08-275-8-47
CCGGCGCCTTACCCTTCCCCAAGGCCAG
18._GC-08-275-8-47
CCGGCGCCTTACCCTTCCCCAAGGCCAG
19._GC-08-275-8-47
CCGGCGCCTTACCCTTCCCCAAGGCCAG
20._GC-08-275-8-47
CCGGCGCCTTACCCTTCCCCAAGGCCAG
21._GC-08-275-8-47
CCGGCGCCTTACCCTTCCCCAAGGCCAG
22._RUQ_32
CCGGCGCTTTACCCTTCCCCAAGGCCAG
23._PA_56_[PER]
CCGGCGCTTTACCCTTCCCCAAGGCCAG
24._PA_72_[PER]
CTAGGGCTTTACCCTTCCCCAAGGCCAG
25._PA_72_[PER]
CTAGGGCTTTACCCTTCCCCAAGGCCAG
26._PA_72_[PER]
CTAGGGCTTTACCCTTCCCCAAGGCCAG
27._PA_72_[PER]
CTAGGGCTTTACCCTTCCCCAAGGCCAG
28._PA_72_[PER]
CTAGGGCTTTACCCTTCCCCAAGGCCAG
29._PA_72_[PER]
CTAGGGCTTTACCCTTCCCCAAGGCCAG
30._PA_72_[PER]
CTAGGGCTTTACCCTTCCCCAAGGCCAG
31._PA_72_[PER]
CTAGGGCTTTACCCTTCCCCAAGGCCAG
32._PA_72_[PER]
CTAGGGCTTTACCCTTCCCCAAGGCCAG
33._PA_72_[PER]
CTAGGGCTTTACCCTTCCCCAAGGCCAG
34._GC-08-051-1-62
CTAGGGCTTTACCCTTCCCCAAGGCCAG
35._GC-08-051-1-62
CTAGGGCTTTACCCTTCCCCAAGGCCAG
36._GC-08-051-1-62
CTAGGGCTTTACCCTTCCCCAAGGCCAG
37._GC-08-051-1-62
CTAGGGCTTTACCCTTCCCCAAGGCCAG
38._GC-08-051-1-62
CTAGGGCTTTACCCTTCCCCAAGGCCAG
39._GC-08-051-1-62
CTAGGGCTTTACCCTTCCCCAAGGCCAG
40._GC-08-051-1-62
CTAGGGCTTTACCCTTCCCCAAGGCCAG
41._GC-08-051-1-62
CTAGGGCTTTACCCTTCCCCAAGGCCAG
42._GC-08-051-1-62
CTAGGGCTTTACCCTTCCCCAAGGCCAG
43._GC-08-051-1-62
CTAGGGCTTTACCCTTCCCCAAGGCCAG
44._PA_72_[PER]
CTAGGGCTTTACCCTTCCCCAAGGCCAG
45._PA_72_[PER]
CTAGGGCTTTACCCTTCCCCAAGGCCAG
46._MARPER_42
CCGGCGCC-ACCC-CC-AAGG-AG
 1516171819202122232425262728
_Input profile
CTAACGCTCCGGGGAATTCCGGGTCTCC
1._MO_9
CTAACGCTCCGGGGAATTCCGGGTCTCC
2._MO_9
CTAACGCTCCGGGGAATTCCGGGTCTCC
3._MO_9
CTAACGCTCCGGGGAATTCCGGGTCTCC
4._MO_9
CTAACGCTCCGGGGAATTCCGGGTCTCC
5._GC-05-071-2-22
CTAACGCTCCGGGGAATTCCGGGTCTCC
6._GC-05-071-2-22
CTAACGCTCCGGGGAATTCCGGGTCTCC
7._GC-05-119-3-21
CTAACGCTCCGGGGAATTCCGGGTCTCC
8._GC-05-119-3-21
CTAACGCTCCGGGGAATTCCGGGTCTCC
9._GC-05-119-3-21
CTAACGCTCCGGGGAATTCCGGGTCTCC
10._MO_9
CTAACGCTCCGGGGAATTCCGGGTCTCC
11._IMC_41
CTAAGGCTCCGGGGAATT_GGGTCCAA
12._IMC_41
CTAAGGCTCCGGGGAATTACGGGTCCAA
13._IMC_41
CTAAGGCTCCGGGGAATTACGGGTCCAA
14._IMC_41
CTAAGGCTCCGGGGAATTACGGGTCCAA
15._IMC_41
CTAAGGCTCCGGGGAATTACGGGTCCAA
16._IMC_41
CTAAGGCTCCGGGGAATTACGGGTCCAA
17._GC-08-275-8-47
CTAAGGCTCCGGGGAATTACGGGTCCAA
18._GC-08-275-8-47
CTAAGGCTCCGGGGAATTACGGGTCCAA
19._GC-08-275-8-47
CTAAGGCTCCGGGGAATTACGGGTCCAA
20._GC-08-275-8-47
CTAAGGCTCCGGGGAATTACGGGTCCAA
21._GC-08-275-8-47
CTAAGGCTCCGGGGAATTACGGGTCCAA
22._RUQ_32
CTAAGGCTCCGGGGAATTCCCGGTCTAC
23._PA_56_[PER]
CTAAGGCTCCGGGGAATTCCCGGTCTAC
24._PA_72_[PER]
CTAAGGCTCCGGGGAATTCCCGGTCTAC
25._PA_72_[PER]
CTAAGGCTCCGGGGAATTCCCGGTCTAC
26._PA_72_[PER]
CTAAGGCTCCGGGGAATTCCCGGTCTAC
27._PA_72_[PER]
CTAAGGCTCCGGGGAATTCCCGGTCTAC
28._PA_72_[PER]
CTAAGGCTCCGGGGAATTCCCGGTCTAC
29._PA_72_[PER]
CTAAGGCTCCGGGGAATTCCCGGTCTAC
30._PA_72_[PER]
CTAAGGCTCCGGGGAATTCCCGGTCTAC
31._PA_72_[PER]
CTAAGGCTCCGGGGAATTCCCGGTCTAC
32._PA_72_[PER]
CTAAGGCTCCGGGGAATTCCCGGTCTAC
33._PA_72_[PER]
CTAAGGCTCCGGGGAATTCCCGGTCTAC
34._GC-08-051-1-62
CTAAGGCTCCGGGGAATTCCCGGTCTAC
35._GC-08-051-1-62
CTAAGGCTCCGGGGAATTCCCGGTCTAC
36._GC-08-051-1-62
CTAAGGCTCCGGGGAATTCCCGGTCTAC
37._GC-08-051-1-62
CTAAGGCTCCGGGGAATTCCCGGTCTAC
38._GC-08-051-1-62
CTAAGGCTCCGGGGAATTCCCGGTCTAC
39._GC-08-051-1-62
CTAAGGCTCCGGGGAATTCCCGGTCTAC
40._GC-08-051-1-62
CTAAGGCTCCGGGGAATTCCCGGTCTAC
41._GC-08-051-1-62
CTAAGGCTCCGGGGAATTCCCGGTCTAC
42._GC-08-051-1-62
CTAAGGCTCCGGGGAATTCCCGGTCTAC
43._GC-08-051-1-62
CTAAGGCTCCGGGGAATTCCCGGTCTAC
44._PA_72_[PER]
CTAAGGCTCCGGGGAATTCCCGGTCTAC
45._PA_72_[PER]
CTAAGGCTCCGG-AATTCCCGGTCTAC
46._MARPER_42
CTAAGG-CC-GGAATT-GG-CCAA
 2930313233343536373839   
_Input profile
AAGGAACCAACCCCGTACAAGGX_XX_XX_X
1._MO_9
AAGGAACCAACCCCGTACAAGGX_XX_XX_X
2._MO_9
AAGGAACCAACCCCGTACAAGGX_XX_XX_X
3._MO_9
AAGGAACCAACCCCGTACAAGGX_XX_XX_X
4._MO_9
AAGGAACCAACCCCGTACAAGGX_XX_XX_X
5._GC-05-071-2-22
AAGGAACCAACCCCGTACAAGGX_XX_XX_X
6._GC-05-071-2-22
AAGGAACCAACCCCGTACAAGGX_XX_XX_X
7._GC-05-119-3-21
AAGGAACCAACCCCGTACAAGGX_XX_XX_X
8._GC-05-119-3-21
AAGGAACCAACCCCGTACAAGGX_XX_XX_X
9._GC-05-119-3-21
AAGGAACCAACCCCGTACAAGGX_XX_XX_X
10._MO_9
AAGGAACCAA_CCGTACAAGGX_XX_XX_X
11._IMC_41
AAGGAACCAA_CCGTACAAGGX_XX_XX_X
12._IMC_41
AAGGAACCAACCCCGTACAAGGX_XX_XX_X
13._IMC_41
AAGGAACCAACCCCGTACAAGGX_XX_XX_X
14._IMC_41
AAGGAACCAACCCCGTACAAGGX_XX_XX_X
15._IMC_41
AAGGAACCAACCCCGTACAAGGX_XX_XX_X
16._IMC_41
AAGGAACCAACCCCGTACAAGGX_XX_XX_X
17._GC-08-275-8-47
AAGGAACCAACCCCGTACAAGGX_XX_XX_X
18._GC-08-275-8-47
AAGGAACCAACCCCGTACAAGGX_XX_XX_X
19._GC-08-275-8-47
AAGGAACCAACCCCGTACAAGGX_XX_XX_X
20._GC-08-275-8-47
AAGGAACCAACCCCGTACAAGGX_XX_XX_X
21._GC-08-275-8-47
AAGGAACCAACCCCGTACAAGGX_XX_XX_X
22._RUQ_32
AAGGAACCAGCCCCGGCCAAGGX_XX_XX_X
23._PA_56_[PER]
AAGGAACCAGCCCCGGCCAAGGX_XX_XX_X
24._PA_72_[PER]
AAGGAACCAGCCCCGTACAAGGX_XX_XX_X
25._PA_72_[PER]
AAGGAACCAGCCCCGTACAAGGX_XX_XX_X
26._PA_72_[PER]
AAGGAACCAGCCCCGTACAAGGX_XX_XX_X
27._PA_72_[PER]
AAGGAACCAGCCCCGTACAAGGX_XX_XX_X
28._PA_72_[PER]
AAGGAACCAGCCCCGTACAAGGX_XX_XX_X
29._PA_72_[PER]
AAGGAACCAGCCCCGTACAAGGX_XX_XX_X
30._PA_72_[PER]
AAGGAACCAGCCCCGTACAAGGX_XX_XX_X
31._PA_72_[PER]
AAGGAACCAGCCCCGTACAAGGX_XX_XX_X
32._PA_72_[PER]
AAGGAACCAGCCCCGTACAAGGX_XX_XX_X
33._PA_72_[PER]
AAGGAACCAGCCCCGTACAAGGX_XX_XX_X
34._GC-08-051-1-62
AAGGAACCAGCCCCGTACAAGGX_XX_XX_X
35._GC-08-051-1-62
AAGGAACCAGCCCCGTACAAGGX_XX_XX_X
36._GC-08-051-1-62
AAGGAACCAGCCCCGTACAAGGX_XX_XX_X
37._GC-08-051-1-62
AAGGAACCAGCCCCGTACAAGGX_XX_XX_X
38._GC-08-051-1-62
AAGGAACCAGCCCCGTACAAGGX_XX_XX_X
39._GC-08-051-1-62
AAGGAACCAGCCCCGTACAAGGX_XX_XX_X
40._GC-08-051-1-62
AAGGAACCAGCCCCGTACAAGGX_XX_XX_X
41._GC-08-051-1-62
AAGGAACCAGCCCCGTACAAGGX_XX_XX_X
42._GC-08-051-1-62
AAGGAACCAGCCCCGTACAAGGX_XX_XX_X
43._GC-08-051-1-62
AAGGAACCAGCCCCGTACAAGGX_XX_XX_X
44._PA_72_[PER]
AAGGAACCAGCCCCGTACAAGGX_XX_XX_X
45._PA_72_[PER]
AAGGAACCAG-CCGTACAAGGX_XX_XX_X
46._MARPER_42
AAGG-CCAA--GT-AA-X_XX_XX_X

Input profile: MO_9

 
Mars Center for Cocoa Science, Brazil
Location: 5321 3 > FP
 Dapeng Zhang, 2016

1._MO_9

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 4 > FP
 Dapeng Zhang, 2016

2._MO_9

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 2
 Dapeng Zhang, 2016

3._MO_9

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 1 > FP
 Dapeng Zhang, 2016

4._MO_9

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 5
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

5._MO_9 GC-05-071-2-22

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

6._MO_9 GC-05-071-2-22

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

7._MO_9 GC-05-119-3-21

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

8._MO_9 GC-05-119-3-21

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

9._MO_9 GC-05-119-3-21

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

10._MO_9

identical
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D835
 Dapeng Zhang, 2016

11._IMC_41

93.1 %
36 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F418 T1
 Dapeng Zhang, 2016

12._IMC_41

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 5
 Dapeng Zhang, 2016

13._IMC_41

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 4
 Dapeng Zhang, 2016

14._IMC_41

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 3
 Dapeng Zhang, 2016

15._IMC_41

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 2
 Dapeng Zhang, 2016

16._IMC_41

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

17._IMC_41 GC-08-275-8-47

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

18._IMC_41 GC-08-275-8-47

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

19._IMC_41 GC-08-275-8-47

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

20._IMC_41 GC-08-275-8-47

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

21._IMC_41 GC-08-275-8-47

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

22._PA_56_[PER] RUQ_32

92.3 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

23._PA_56_[PER]

92.3 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 238
 Dapeng Zhang, 2016

24._PA_72_[PER]

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

25._PA_72_[PER]

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 3
 Dapeng Zhang, 2016

26._PA_72_[PER]

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 5
 Dapeng Zhang, 2016

27._PA_72_[PER]

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 6
 Dapeng Zhang, 2016

28._PA_72_[PER]

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 8
 Dapeng Zhang, 2016

29._PA_72_[PER]

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 9
 Dapeng Zhang, 2016

30._PA_72_[PER]

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 10
 Dapeng Zhang, 2016

31._PA_72_[PER]

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 1 > FP
 Dapeng Zhang, 2016

32._PA_72_[PER]

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 4 > FP
 Dapeng Zhang, 2016

33._PA_72_[PER]

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 7 > FP
 Dapeng Zhang, 2016

34._PA_72_[PER] GC-08-051-1-62

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

35._PA_72_[PER] GC-08-051-1-62

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

36._PA_72_[PER] GC-08-051-1-62

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

37._PA_72_[PER] GC-08-051-1-62

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

38._PA_72_[PER] GC-08-051-1-62

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

39._PA_72_[PER] GC-08-051-1-62

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

40._PA_72_[PER] GC-08-051-1-62

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

41._PA_72_[PER] GC-08-051-1-62

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

42._PA_72_[PER] GC-08-051-1-62

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

43._PA_72_[PER] GC-08-051-1-62

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

44._PA_72_[PER]

91 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 633
 Dapeng Zhang, 2016

45._PA_72_[PER]

90.5 %
37 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 633
 Dapeng Zhang, 2014

46._MARPER_42

90.4 %
26 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 713
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25